Wall clock time and date at job start Tue Mar 31 2020 19:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99964 * 2 1 4 4 C 1.52999 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47071 * 175.64721 * 4 3 2 6 6 N 1.28439 * 125.18926 * 264.53221 * 5 4 3 7 7 C 1.30866 * 110.92854 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.85628 * 359.73873 * 7 6 5 9 9 C 1.36599 * 125.18816 * 84.50772 * 5 4 3 10 10 C 1.47156 * 126.88641 * 0.02562 * 9 5 4 11 11 O 1.21625 * 120.00496 * 27.13006 * 10 9 5 12 12 N 1.34785 * 119.99948 * 207.40272 * 10 9 5 13 13 C 1.46926 * 120.62655 * 7.97239 * 12 10 9 14 14 C 1.53196 * 108.77496 * 126.36994 * 13 12 10 15 15 C 1.53037 * 109.31340 * 54.62902 * 14 13 12 16 16 H 1.08994 * 109.46458 * 58.65919 * 15 14 13 17 17 N 1.46498 * 109.45829 * 178.62908 * 15 14 13 18 18 C 1.36940 * 120.00144 * 275.00032 * 17 15 14 19 19 H 1.07993 * 119.99612 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99773 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00413 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99688 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47274 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47480 * 119.99840 * 22 20 18 25 25 H 1.48503 * 109.47030 * 239.99961 * 22 20 18 26 26 C 1.53034 * 109.53931 * 298.63372 * 15 14 13 27 27 H 1.09001 * 109.50245 * 301.41625 * 26 15 14 28 28 C 1.52995 * 109.50113 * 181.35229 * 26 15 14 29 29 C 1.46924 * 120.62851 * 187.68713 * 12 10 9 30 30 H 1.08997 * 109.46675 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.47194 * 59.99944 * 1 2 3 32 32 H 1.08995 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47034 * 60.00706 * 3 2 1 34 34 H 1.08993 * 109.47057 * 300.00210 * 3 2 1 35 35 H 1.08996 * 109.47216 * 55.64647 * 4 3 2 36 36 H 1.09003 * 109.47467 * 295.64779 * 4 3 2 37 37 H 1.08000 * 126.06968 * 180.02562 * 7 6 5 38 38 H 1.07998 * 127.31326 * 180.27299 * 8 7 6 39 39 H 1.09004 * 109.58412 * 246.15013 * 13 12 10 40 40 H 1.08996 * 109.59015 * 6.57765 * 13 12 10 41 41 H 1.08997 * 109.49349 * 174.58572 * 14 13 12 42 42 H 1.08996 * 109.49252 * 294.67665 * 14 13 12 43 43 H 0.97004 * 119.99898 * 94.99978 * 17 15 14 44 44 H 0.96998 * 120.00271 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47304 * 59.99636 * 28 26 15 46 46 H 1.08997 * 109.47879 * 180.02562 * 28 26 15 47 47 H 1.09010 * 109.47221 * 300.00272 * 28 26 15 48 48 H 1.08998 * 109.58890 * 353.42023 * 29 12 10 49 49 H 1.08998 * 109.58352 * 113.84927 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1310 2.5191 -0.1055 6 7 4.5166 3.0738 -1.1979 7 6 5.0056 4.2660 -0.9695 8 6 4.9229 4.5069 0.4039 9 6 4.3605 3.3633 0.9436 10 6 4.0633 3.1101 2.3624 11 8 4.0388 1.9698 2.7846 12 7 3.8130 4.1417 3.1930 13 6 3.6607 5.5055 2.6680 14 6 2.3292 6.0787 3.1633 15 6 2.2734 5.9829 4.6897 16 1 3.1115 6.5317 5.1189 17 7 1.0152 6.5601 5.1692 18 6 0.9179 7.9094 5.3814 19 1 1.7685 8.5481 5.1948 20 6 -0.2745 8.4564 5.8353 21 7 -1.3116 7.6782 6.0613 22 14 -0.4075 10.2971 6.1241 23 1 0.8886 10.9444 5.7975 24 1 -1.4741 10.8586 5.2567 25 1 -0.7424 10.5519 7.5482 26 6 2.3547 4.5147 5.1136 27 1 1.5306 3.9601 4.6646 28 6 2.2649 4.4174 6.6378 29 6 3.6810 3.9228 4.6398 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8515 0.5780 -0.8493 36 1 3.8630 0.7124 0.9255 37 1 5.3987 4.9449 -1.7117 38 1 5.2341 5.3958 0.9324 39 1 4.4816 6.1279 3.0243 40 1 3.6649 5.4802 1.5783 41 1 2.2478 7.1228 2.8611 42 1 1.5055 5.5095 2.7327 43 1 0.2511 5.9864 5.3365 44 1 -2.1447 8.0604 6.3788 45 1 1.3182 4.8405 6.9738 46 1 2.3233 3.3716 6.9394 47 1 3.0898 4.9711 7.0865 48 1 3.6985 2.8535 4.8507 49 1 4.5035 4.4135 5.1601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036070607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:04 Heat of formation + Delta-G solvation = 0.740268 kcal Electronic energy + Delta-G solvation = -30284.730388 eV Core-core repulsion = 26248.715937 eV Total energy + Delta-G solvation = -4036.014450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.67843 -41.12296 -39.16697 -38.97049 -36.34610 -35.04209 -34.50861 -33.13540 -31.95089 -31.04421 -30.38935 -27.72959 -27.36423 -26.82812 -25.11083 -24.49114 -23.23054 -23.13178 -22.53336 -21.12231 -20.32528 -19.06734 -18.37938 -18.05179 -17.41782 -17.28471 -17.06673 -16.77567 -16.48467 -16.22974 -15.70282 -15.55745 -15.48723 -15.26345 -15.00400 -14.89774 -14.54736 -14.27920 -14.04520 -13.92988 -13.57970 -13.21499 -13.07332 -12.93503 -12.87699 -12.77025 -12.68426 -12.47742 -12.41688 -12.08464 -12.06638 -11.85421 -11.79167 -11.62072 -11.22373 -11.14657 -10.90556 -10.86045 -10.32164 -10.01551 -9.73108 -8.94634 -7.89931 -5.17331 0.17715 1.06884 1.49773 1.50552 1.59734 1.61924 1.85134 2.02444 2.59292 2.77808 3.25651 3.43600 3.44432 3.69547 3.79516 3.81614 3.89643 4.00110 4.02507 4.09599 4.15833 4.30242 4.35194 4.37332 4.38588 4.45051 4.48891 4.51398 4.62179 4.68348 4.73839 4.77819 4.81306 4.82289 4.84362 4.97698 5.01906 5.17833 5.29929 5.40944 5.47652 5.50388 5.57674 5.62256 5.65454 5.89556 6.21661 6.31692 6.86747 7.02919 7.38240 8.14360 8.37050 9.33982 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003022 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.981384 B = 9262.818720 C = 9704.935444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.121 3.879 5 N -0.268 5.268 6 N -0.297 5.297 7 C 0.005 3.995 8 C -0.178 4.178 9 C -0.052 4.052 10 C 0.586 3.414 11 O -0.572 6.572 12 N -0.587 5.587 13 C 0.097 3.903 14 C -0.142 4.142 15 C 0.179 3.821 16 H 0.055 0.945 17 N -0.732 5.732 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.966 3.034 23 H -0.262 1.262 24 H -0.299 1.299 25 H -0.299 1.299 26 C -0.100 4.100 27 H 0.047 0.953 28 C -0.129 4.129 29 C 0.129 3.871 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.224 0.776 38 H 0.195 0.805 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.369 0.631 44 H 0.247 0.753 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -9.899 -13.255 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.017 4.017 4 C 0.000 4.000 5 N -0.057 5.057 6 N -0.128 5.128 7 C -0.171 4.171 8 C -0.207 4.207 9 C -0.180 4.180 10 C 0.374 3.626 11 O -0.453 6.453 12 N -0.318 5.318 13 C -0.025 4.025 14 C -0.183 4.183 15 C 0.070 3.930 16 H 0.073 0.927 17 N -0.371 5.371 18 C -0.359 4.359 19 H 0.099 0.901 20 C -0.269 4.269 21 N -0.624 5.624 22 Si 0.796 3.204 23 H -0.186 1.186 24 H -0.227 1.227 25 H -0.227 1.227 26 C -0.120 4.120 27 H 0.066 0.934 28 C -0.187 4.187 29 C 0.006 3.994 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.240 0.760 38 H 0.212 0.788 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.201 0.799 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.239 -11.389 -13.841 22.283 hybrid contribution -1.270 1.537 1.116 2.285 sum 11.968 -9.852 -12.725 20.056 Atomic orbital electron populations 1.23002 0.78574 1.04588 1.00804 1.87759 1.22074 1.26355 1.95596 1.22536 0.92647 0.85789 1.00684 1.21782 0.92211 0.78940 1.07055 1.45538 1.43254 1.14210 1.02668 1.73225 1.16651 1.11991 1.10923 1.24296 1.02574 0.93465 0.96754 1.22855 1.04542 0.98137 0.95146 1.21486 1.11684 0.94633 0.90209 1.17187 0.76736 0.84502 0.84184 1.90764 1.54454 1.22263 1.77788 1.47882 1.68226 1.08237 1.07472 1.22508 0.97990 0.80692 1.01295 1.22483 0.96429 1.00900 0.98449 1.20457 0.88800 0.91717 0.92013 0.92707 1.42619 1.10834 1.04791 1.78872 1.19658 0.96597 0.85263 1.34376 0.90129 1.25469 0.96257 1.01514 1.03641 1.69824 1.02848 1.35335 1.54369 0.85173 0.77671 0.81053 0.76499 1.18603 1.22678 1.22677 1.21527 0.97138 0.96321 0.97030 0.93399 1.21571 1.01984 1.01358 0.93826 1.21626 0.97126 1.02247 0.78368 0.94105 0.92662 0.87138 0.94360 0.91958 0.85792 0.87192 0.75965 0.78806 0.88111 0.86919 0.91028 0.94492 0.79935 0.94380 0.94172 0.91761 0.91911 0.89504 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -9.24 10.70 -148.98 -1.59 -10.84 16 3 C 0.06 1.43 6.26 71.98 0.45 1.88 16 4 C 0.12 2.75 6.33 86.38 0.55 3.30 16 5 N -0.27 -6.45 3.35 -334.69 -1.12 -7.57 16 6 N -0.30 -6.66 11.90 -57.14 -0.68 -7.34 16 7 C 0.01 0.09 12.03 85.18 1.02 1.12 16 8 C -0.18 -3.16 8.60 22.66 0.19 -2.97 16 9 C -0.05 -1.26 6.41 40.78 0.26 -1.00 16 10 C 0.59 16.22 7.53 86.58 0.65 16.87 16 11 O -0.57 -18.92 14.56 -4.11 -0.06 -18.98 16 12 N -0.59 -14.73 2.98 -823.91 -2.45 -17.18 16 13 C 0.10 2.11 5.19 86.36 0.45 2.56 16 14 C -0.14 -4.35 5.66 30.67 0.17 -4.17 16 15 C 0.18 6.28 2.20 45.02 0.10 6.38 16 16 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 17 N -0.73 -34.45 4.41 -322.84 -1.42 -35.87 16 18 C -0.23 -11.79 9.93 84.03 0.83 -10.95 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.36 13.06 21.65 0.28 -58.07 16 22 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 C -0.10 -3.11 2.44 -10.86 -0.03 -3.14 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 C -0.13 -3.99 9.03 71.98 0.65 -3.34 16 29 C 0.13 3.30 5.70 86.22 0.49 3.79 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 36 H 0.11 2.82 6.44 -2.39 -0.02 2.80 16 37 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.20 2.30 6.43 -2.91 -0.02 2.28 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 2.12 4.23 -2.39 -0.01 2.11 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.37 19.37 7.50 -92.70 -0.70 18.67 16 44 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.04 1.52 7.36 -2.39 -0.02 1.50 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.09 2.35 7.00 -2.39 -0.02 2.34 16 49 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.57 392.73 2.75 -66.82 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.26 Total: 34.08 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.51 Total: 8.24 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -5.39 Total: -126.04 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.65 Total: -29.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.57 2.75 -66.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.559 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds