Wall clock time and date at job start Tue Mar 31 2020 19:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99902 * 2 1 4 4 C 1.53004 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47187 * 175.60789 * 4 3 2 6 6 N 1.28445 * 125.19375 * 264.43899 * 5 4 3 7 7 C 1.30863 * 110.92790 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86026 * 359.77818 * 7 6 5 9 9 C 1.36601 * 125.18793 * 84.46544 * 5 4 3 10 10 C 1.47167 * 126.88331 * 359.93920 * 9 5 4 11 11 O 1.21626 * 119.99864 * 25.83234 * 10 9 5 12 12 N 1.34776 * 119.99848 * 205.82943 * 10 9 5 13 13 C 1.46928 * 120.63018 * 0.55109 * 12 10 9 14 14 C 1.53196 * 108.77439 * 126.39417 * 13 12 10 15 15 C 1.53034 * 109.31322 * 54.63351 * 14 13 12 16 16 H 1.09004 * 109.46245 * 178.61596 * 15 14 13 17 17 N 1.46498 * 109.46365 * 58.65320 * 15 14 13 18 18 C 1.36943 * 119.99620 * 85.00068 * 17 15 14 19 19 H 1.07996 * 120.00287 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99853 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47183 * 59.99971 * 22 20 18 24 24 H 1.48502 * 109.47415 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47034 * 300.00012 * 22 20 18 26 26 C 1.53040 * 109.53946 * 298.63305 * 15 14 13 27 27 H 1.08997 * 109.50088 * 301.41687 * 26 15 14 28 28 C 1.52998 * 109.50130 * 181.35277 * 26 15 14 29 29 C 1.46921 * 120.62747 * 180.54984 * 12 10 9 30 30 H 1.08999 * 109.47029 * 299.99864 * 1 2 3 31 31 H 1.08998 * 109.46909 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46607 * 60.00268 * 3 2 1 34 34 H 1.09000 * 109.47060 * 300.00147 * 3 2 1 35 35 H 1.09010 * 109.46989 * 55.61183 * 4 3 2 36 36 H 1.08996 * 109.47558 * 295.61586 * 4 3 2 37 37 H 1.08004 * 126.06603 * 179.97438 * 7 6 5 38 38 H 1.07996 * 127.31543 * 180.26773 * 8 7 6 39 39 H 1.09001 * 109.58840 * 6.60053 * 13 12 10 40 40 H 1.09001 * 109.58479 * 246.17846 * 13 12 10 41 41 H 1.08994 * 109.49554 * 294.67847 * 14 13 12 42 42 H 1.08995 * 109.49453 * 174.58553 * 14 13 12 43 43 H 0.97003 * 120.00491 * 265.00095 * 17 15 14 44 44 H 0.97005 * 119.99915 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.47180 * 59.99836 * 28 26 15 46 46 H 1.09005 * 109.47044 * 180.02562 * 28 26 15 47 47 H 1.08999 * 109.46734 * 299.99936 * 28 26 15 48 48 H 1.09001 * 109.58478 * 113.82131 * 29 12 10 49 49 H 1.08999 * 109.59107 * 353.39641 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1311 2.5190 -0.1051 6 7 4.5191 3.0720 -1.1976 7 6 5.0084 4.2641 -0.9699 8 6 4.9241 4.5067 0.4031 9 6 4.3590 3.3646 0.9432 10 6 4.0581 3.1140 2.3618 11 8 4.0081 1.9731 2.7804 12 7 3.8382 4.1486 3.1970 13 6 3.8834 5.5318 2.7035 14 6 2.5782 6.2355 3.0883 15 6 2.3638 6.1138 4.5986 16 1 1.4482 6.6348 4.8786 17 7 3.5005 6.7122 5.3028 18 6 3.5223 8.0595 5.5470 19 1 2.7018 8.6809 5.2200 20 6 4.5996 8.6267 6.2138 21 7 5.5999 7.8694 6.6118 22 14 4.6298 10.4645 6.5462 23 1 3.4571 10.8365 7.3777 24 1 5.8797 10.8169 7.2664 25 1 4.5769 11.2015 5.2580 26 6 2.2472 4.6366 4.9816 27 1 1.4168 4.1846 4.4392 28 6 1.9992 4.5173 6.4866 29 6 3.5486 3.9147 4.6183 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8522 0.5772 -0.8473 36 1 3.8623 0.7133 0.9275 37 1 5.4041 4.9415 -1.7123 38 1 5.2351 5.3960 0.9310 39 1 3.9914 5.5294 1.6188 40 1 4.7269 6.0536 3.1555 41 1 1.7448 5.7685 2.5636 42 1 2.6378 7.2884 2.8130 43 1 4.2377 6.1541 5.5962 44 1 6.3529 8.2658 7.0775 45 1 1.0744 5.0333 6.7445 46 1 1.9166 3.4650 6.7589 47 1 2.8303 4.9684 7.0286 48 1 4.3648 4.3047 5.2264 49 1 3.4355 2.8455 4.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036070609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:10 Heat of formation + Delta-G solvation = 31.857090 kcal Electronic energy + Delta-G solvation = -30660.596804 eV Core-core repulsion = 26625.931680 eV Total energy + Delta-G solvation = -4034.665123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.70631 -39.87956 -38.29531 -37.69526 -34.73640 -33.84984 -33.01424 -31.53577 -30.83411 -29.53968 -29.21239 -26.63962 -26.38636 -25.38285 -23.80870 -23.55028 -22.34910 -21.89085 -21.43024 -19.60393 -18.53034 -17.41739 -17.19347 -16.92055 -16.42651 -16.26993 -16.07187 -15.52002 -15.17438 -14.73133 -14.59421 -14.45129 -14.15130 -14.04249 -13.81819 -13.45203 -13.31881 -13.14863 -12.84376 -12.54811 -12.38396 -12.10806 -11.83729 -11.67915 -11.59782 -11.44597 -11.24525 -10.93240 -10.83495 -10.81865 -10.55375 -10.33658 -10.25441 -10.08566 -9.89438 -9.87629 -9.59453 -9.31178 -9.05372 -8.89950 -8.33175 -7.01624 -5.82397 -3.11141 1.24502 2.05715 2.53212 3.06673 3.17850 3.39554 3.44993 3.45820 3.64651 4.34661 4.42822 4.54356 4.57950 4.78186 4.93673 5.01832 5.04937 5.09920 5.12717 5.26155 5.31207 5.32373 5.34090 5.41132 5.51563 5.54082 5.58700 5.66972 5.69426 5.79720 5.86568 5.99144 6.04569 6.18129 6.27942 6.34624 6.38253 6.44347 6.55051 6.56503 6.64333 6.71018 6.72292 6.87719 6.93457 7.52979 7.64940 7.93460 8.17921 8.36021 9.47660 10.03732 10.38855 11.39827 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.003217 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.238207 B = 8701.554861 C = 9670.333748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.054 3.946 4 C 0.119 3.881 5 N -0.260 5.260 6 N -0.282 5.282 7 C 0.001 3.999 8 C -0.196 4.196 9 C -0.024 4.024 10 C 0.583 3.417 11 O -0.551 6.551 12 N -0.579 5.579 13 C 0.080 3.920 14 C -0.148 4.148 15 C 0.178 3.822 16 H 0.051 0.949 17 N -0.718 5.718 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.108 4.108 27 H 0.064 0.936 28 C -0.137 4.137 29 C 0.120 3.880 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.188 0.812 38 H 0.178 0.822 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -11.120 -13.278 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.024 4.024 4 C -0.002 4.002 5 N -0.049 5.049 6 N -0.113 5.113 7 C -0.176 4.176 8 C -0.224 4.224 9 C -0.152 4.152 10 C 0.370 3.630 11 O -0.430 6.430 12 N -0.309 5.309 13 C -0.042 4.042 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.069 0.931 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.128 4.128 27 H 0.083 0.917 28 C -0.195 4.195 29 C -0.002 4.002 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.205 0.795 38 H 0.195 0.805 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.482 -12.619 -13.836 20.166 hybrid contribution 0.281 1.935 0.879 2.144 sum -7.201 -10.684 -12.958 18.273 Atomic orbital electron populations 1.22789 0.80040 1.03108 1.00352 1.87792 1.20463 1.26494 1.95544 1.22665 0.92673 0.85701 1.01387 1.21808 0.92222 0.78936 1.07225 1.45428 1.42911 1.13901 1.02635 1.73198 1.16283 1.10926 1.10888 1.23648 1.03905 0.93860 0.96208 1.22710 1.06097 0.98699 0.94896 1.21493 1.09614 0.93156 0.90914 1.16940 0.77676 0.84991 0.83428 1.90763 1.53643 1.21247 1.77361 1.47829 1.67202 1.06548 1.09371 1.22672 1.00615 0.80035 1.00843 1.22513 0.95698 1.00544 1.00200 1.20224 0.92581 0.90578 0.89894 0.93127 1.42463 1.20415 1.05996 1.67193 1.19163 1.03067 0.84312 1.30469 0.91313 1.24701 0.97038 0.97636 1.01293 1.69637 1.09622 1.34240 1.44528 0.86316 0.76734 0.85543 0.77838 1.21389 1.21805 1.21333 1.21705 0.96494 0.97347 0.97212 0.91718 1.21665 1.02822 1.00227 0.94795 1.21742 0.97964 1.01225 0.79240 0.93648 0.93887 0.89116 0.92397 0.92502 0.87253 0.85727 0.79486 0.80504 0.88151 0.89268 0.93511 0.90572 0.78100 0.93438 0.92738 0.93733 0.90947 0.90173 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.30 10.70 -35.23 -0.38 -4.68 16 3 C 0.05 0.60 6.26 37.16 0.23 0.84 16 4 C 0.12 1.42 6.31 -4.04 -0.03 1.39 16 5 N -0.26 -3.50 3.35 -57.14 -0.19 -3.69 16 6 N -0.28 -3.71 11.90 30.59 0.36 -3.34 16 7 C 0.00 0.01 12.03 -17.43 -0.21 -0.20 16 8 C -0.20 -2.45 8.71 -38.98 -0.34 -2.79 16 9 C -0.02 -0.34 6.59 -82.06 -0.54 -0.88 16 10 C 0.58 9.36 7.57 -12.64 -0.10 9.26 16 11 O -0.55 -9.87 14.51 5.25 0.08 -9.79 16 12 N -0.58 -9.10 2.97 -174.13 -0.52 -9.62 16 13 C 0.08 1.21 5.20 -3.71 -0.02 1.19 16 14 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 15 C 0.18 3.17 2.53 -67.89 -0.17 3.00 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 N -0.72 -15.89 3.64 -53.39 -0.19 -16.09 16 18 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 19 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 22 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.11 -1.69 2.67 -90.50 -0.24 -1.93 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.14 -2.12 9.06 37.16 0.34 -1.78 16 29 C 0.12 1.95 5.42 -3.71 -0.02 1.93 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 1.13 8.14 -51.92 -0.42 0.71 16 36 H 0.12 1.64 6.43 -51.93 -0.33 1.30 16 37 H 0.19 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.18 2.00 5.87 -52.49 -0.31 1.69 16 39 H 0.10 1.32 3.34 -51.93 -0.17 1.14 16 40 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.38 9.12 5.93 -40.82 -0.24 8.88 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 48 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 49 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -30.17 387.90 -7.27 -37.45 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.60 Total: 11.01 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.38 Total: 2.34 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.19 Total: -58.49 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.30 Total: -14.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.17 -7.27 -37.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.304 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds