Wall clock time and date at job start Tue Mar 31 2020 19:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99902 * 2 1 4 4 C 1.53004 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47187 * 175.60789 * 4 3 2 6 6 N 1.28445 * 125.19375 * 264.43899 * 5 4 3 7 7 C 1.30863 * 110.92790 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86026 * 359.77818 * 7 6 5 9 9 C 1.36601 * 125.18793 * 84.46544 * 5 4 3 10 10 C 1.47167 * 126.88331 * 359.93920 * 9 5 4 11 11 O 1.21626 * 119.99864 * 25.83234 * 10 9 5 12 12 N 1.34776 * 119.99848 * 205.82943 * 10 9 5 13 13 C 1.46928 * 120.63018 * 0.55109 * 12 10 9 14 14 C 1.53196 * 108.77439 * 126.39417 * 13 12 10 15 15 C 1.53034 * 109.31322 * 54.63351 * 14 13 12 16 16 H 1.09004 * 109.46245 * 178.61596 * 15 14 13 17 17 N 1.46498 * 109.46365 * 58.65320 * 15 14 13 18 18 C 1.36943 * 119.99620 * 85.00068 * 17 15 14 19 19 H 1.07996 * 120.00287 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99853 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47183 * 59.99971 * 22 20 18 24 24 H 1.48502 * 109.47415 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47034 * 300.00012 * 22 20 18 26 26 C 1.53040 * 109.53946 * 298.63305 * 15 14 13 27 27 H 1.08997 * 109.50088 * 301.41687 * 26 15 14 28 28 C 1.52998 * 109.50130 * 181.35277 * 26 15 14 29 29 C 1.46921 * 120.62747 * 180.54984 * 12 10 9 30 30 H 1.08999 * 109.47029 * 299.99864 * 1 2 3 31 31 H 1.08998 * 109.46909 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46607 * 60.00268 * 3 2 1 34 34 H 1.09000 * 109.47060 * 300.00147 * 3 2 1 35 35 H 1.09010 * 109.46989 * 55.61183 * 4 3 2 36 36 H 1.08996 * 109.47558 * 295.61586 * 4 3 2 37 37 H 1.08004 * 126.06603 * 179.97438 * 7 6 5 38 38 H 1.07996 * 127.31543 * 180.26773 * 8 7 6 39 39 H 1.09001 * 109.58840 * 6.60053 * 13 12 10 40 40 H 1.09001 * 109.58479 * 246.17846 * 13 12 10 41 41 H 1.08994 * 109.49554 * 294.67847 * 14 13 12 42 42 H 1.08995 * 109.49453 * 174.58553 * 14 13 12 43 43 H 0.97003 * 120.00491 * 265.00095 * 17 15 14 44 44 H 0.97005 * 119.99915 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.47180 * 59.99836 * 28 26 15 46 46 H 1.09005 * 109.47044 * 180.02562 * 28 26 15 47 47 H 1.08999 * 109.46734 * 299.99936 * 28 26 15 48 48 H 1.09001 * 109.58478 * 113.82131 * 29 12 10 49 49 H 1.08999 * 109.59107 * 353.39641 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1311 2.5190 -0.1051 6 7 4.5191 3.0720 -1.1976 7 6 5.0084 4.2641 -0.9699 8 6 4.9241 4.5067 0.4031 9 6 4.3590 3.3646 0.9432 10 6 4.0581 3.1140 2.3618 11 8 4.0081 1.9731 2.7804 12 7 3.8382 4.1486 3.1970 13 6 3.8834 5.5318 2.7035 14 6 2.5782 6.2355 3.0883 15 6 2.3638 6.1138 4.5986 16 1 1.4482 6.6348 4.8786 17 7 3.5005 6.7122 5.3028 18 6 3.5223 8.0595 5.5470 19 1 2.7018 8.6809 5.2200 20 6 4.5996 8.6267 6.2138 21 7 5.5999 7.8694 6.6118 22 14 4.6298 10.4645 6.5462 23 1 3.4571 10.8365 7.3777 24 1 5.8797 10.8169 7.2664 25 1 4.5769 11.2015 5.2580 26 6 2.2472 4.6366 4.9816 27 1 1.4168 4.1846 4.4392 28 6 1.9992 4.5173 6.4866 29 6 3.5486 3.9147 4.6183 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8522 0.5772 -0.8473 36 1 3.8623 0.7133 0.9275 37 1 5.4041 4.9415 -1.7123 38 1 5.2351 5.3960 0.9310 39 1 3.9914 5.5294 1.6188 40 1 4.7269 6.0536 3.1555 41 1 1.7448 5.7685 2.5636 42 1 2.6378 7.2884 2.8130 43 1 4.2377 6.1541 5.5962 44 1 6.3529 8.2658 7.0775 45 1 1.0744 5.0333 6.7445 46 1 1.9166 3.4650 6.7589 47 1 2.8303 4.9684 7.0286 48 1 4.3648 4.3047 5.2264 49 1 3.4355 2.8455 4.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036070609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:09 Heat of formation + Delta-G solvation = 13.047572 kcal Electronic energy + Delta-G solvation = -30661.412445 eV Core-core repulsion = 26625.931680 eV Total energy + Delta-G solvation = -4035.480765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.70929 -41.17558 -39.16973 -39.00183 -36.11472 -35.00364 -34.50113 -33.07265 -31.93476 -30.95015 -30.37646 -27.69599 -27.34589 -26.78249 -25.43918 -24.62302 -23.51066 -23.12777 -22.57096 -20.71454 -19.87935 -19.25740 -18.29911 -18.02260 -17.38450 -17.24765 -17.05425 -16.69838 -16.52885 -16.10758 -15.91880 -15.61977 -15.52945 -15.16207 -14.97405 -14.85734 -14.52914 -14.30072 -14.21374 -13.92964 -13.47987 -13.17680 -12.99527 -12.90123 -12.79973 -12.71427 -12.61752 -12.42213 -12.38047 -12.14746 -12.02228 -11.93778 -11.60380 -11.54068 -11.20842 -11.13118 -10.85255 -10.80809 -10.32205 -10.02182 -9.66082 -8.89363 -7.85780 -5.11822 0.15101 1.07611 1.52656 1.53235 1.58408 1.59086 1.90438 1.99097 2.62425 2.81689 3.26610 3.43839 3.48207 3.72637 3.83158 3.87972 3.90273 4.03916 4.06242 4.09822 4.15094 4.28267 4.39311 4.39872 4.42047 4.47671 4.51944 4.53993 4.63977 4.66350 4.71376 4.77647 4.78867 4.84568 4.98849 5.02757 5.14142 5.19698 5.29157 5.29968 5.43992 5.48624 5.60242 5.63411 5.64404 5.95053 6.27112 6.35870 6.87062 7.01076 7.43829 8.19679 8.43412 9.37144 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.003217 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.238207 B = 8701.554861 C = 9670.333748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.064 3.936 4 C 0.118 3.882 5 N -0.263 5.263 6 N -0.291 5.291 7 C 0.009 3.991 8 C -0.192 4.192 9 C -0.046 4.046 10 C 0.584 3.416 11 O -0.574 6.574 12 N -0.579 5.579 13 C 0.088 3.912 14 C -0.141 4.141 15 C 0.172 3.828 16 H 0.047 0.953 17 N -0.723 5.723 18 C -0.226 4.226 19 H 0.075 0.925 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.962 3.038 23 H -0.284 1.284 24 H -0.304 1.304 25 H -0.278 1.278 26 C -0.097 4.097 27 H 0.085 0.915 28 C -0.131 4.131 29 C 0.125 3.875 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.188 0.812 39 H 0.126 0.874 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.374 0.626 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 -10.970 -15.373 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.014 4.014 4 C -0.002 4.002 5 N -0.052 5.052 6 N -0.123 5.123 7 C -0.168 4.168 8 C -0.220 4.220 9 C -0.174 4.174 10 C 0.372 3.628 11 O -0.455 6.455 12 N -0.309 5.309 13 C -0.033 4.033 14 C -0.181 4.181 15 C 0.063 3.937 16 H 0.065 0.935 17 N -0.365 5.365 18 C -0.358 4.358 19 H 0.093 0.907 20 C -0.264 4.264 21 N -0.619 5.619 22 Si 0.792 3.208 23 H -0.210 1.210 24 H -0.230 1.230 25 H -0.205 1.205 26 C -0.117 4.117 27 H 0.103 0.897 28 C -0.189 4.189 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.240 0.760 38 H 0.205 0.795 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.207 0.793 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.933 -12.471 -15.964 22.140 hybrid contribution 0.650 1.812 1.472 2.423 sum -8.284 -10.659 -14.492 19.805 Atomic orbital electron populations 1.23010 0.78446 1.04527 1.00979 1.87771 1.22246 1.26408 1.95621 1.22509 0.92103 0.85795 1.00982 1.21831 0.92788 0.78647 1.06975 1.45539 1.43079 1.14139 1.02443 1.73219 1.16583 1.11684 1.10778 1.24250 1.02546 0.93564 0.96391 1.22895 1.05247 0.98330 0.95544 1.21387 1.11367 0.94399 0.90244 1.17167 0.76967 0.84518 0.84193 1.90747 1.54621 1.22120 1.78003 1.47818 1.67221 1.06776 1.09088 1.22620 0.99270 0.79370 1.02087 1.22387 0.96769 1.00580 0.98393 1.20442 0.90762 0.91605 0.90891 0.93459 1.42567 1.21308 1.05018 1.67580 1.19514 1.02345 0.85720 1.28229 0.90706 1.25354 0.97360 1.01039 1.02602 1.69791 1.10282 1.35477 1.46391 0.85383 0.76002 0.81676 0.77695 1.21044 1.23041 1.20462 1.21623 0.96734 0.95784 0.97567 0.89717 1.21600 1.01692 1.01406 0.94241 1.21603 0.97464 1.01143 0.79520 0.93624 0.92624 0.87404 0.93786 0.91737 0.85853 0.87370 0.75964 0.79513 0.85639 0.91965 0.91193 0.91094 0.79251 0.94408 0.92149 0.91645 0.94028 0.92504 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.53 10.70 -148.98 -1.59 -10.13 16 3 C 0.06 1.37 6.26 71.98 0.45 1.82 16 4 C 0.12 2.72 6.31 86.38 0.55 3.27 16 5 N -0.26 -6.71 3.35 -334.68 -1.12 -7.84 16 6 N -0.29 -6.99 11.90 -57.14 -0.68 -7.67 16 7 C 0.01 0.17 12.03 85.18 1.02 1.20 16 8 C -0.19 -4.36 8.71 22.66 0.20 -4.17 16 9 C -0.05 -1.26 6.59 40.79 0.27 -0.99 16 10 C 0.58 18.43 7.57 86.59 0.66 19.08 16 11 O -0.57 -20.60 14.51 -4.11 -0.06 -20.66 16 12 N -0.58 -17.88 2.97 -823.07 -2.45 -20.33 16 13 C 0.09 2.57 5.20 86.36 0.45 3.02 16 14 C -0.14 -4.20 5.78 30.67 0.18 -4.02 16 15 C 0.17 5.97 2.53 45.02 0.11 6.08 16 16 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 17 N -0.72 -32.23 3.64 -322.82 -1.18 -33.41 16 18 C -0.23 -11.42 9.93 84.03 0.83 -10.59 16 19 H 0.08 3.64 7.83 -2.91 -0.02 3.61 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 22 Si 0.96 44.19 29.55 68.60 2.03 46.21 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.10 -2.95 2.67 -10.71 -0.03 -2.98 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 C -0.13 -3.97 9.06 71.98 0.65 -3.32 16 29 C 0.13 4.06 5.42 86.37 0.47 4.53 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.11 2.86 6.43 -2.39 -0.02 2.85 16 37 H 0.22 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.19 3.81 5.87 -2.91 -0.02 3.79 16 39 H 0.13 3.04 3.34 -2.39 -0.01 3.04 16 40 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 43 H 0.37 18.29 5.93 -92.71 -0.55 17.74 16 44 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 48 H 0.06 2.12 6.64 -2.39 -0.02 2.10 16 49 H 0.09 2.82 7.00 -2.39 -0.02 2.81 16 Total: -1.00 -65.13 387.90 3.17 -61.96 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.41 Total: 36.79 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 7.52 Total: 11.18 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.14 Total: -125.36 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.65 Total: -30.79 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.13 3.17 -61.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.010 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds