Wall clock time and date at job start Tue Mar 31 2020 19:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99588 * 2 1 4 4 C 1.53004 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47064 * 175.31219 * 4 3 2 6 6 N 1.28440 * 125.19024 * 275.90452 * 5 4 3 7 7 C 1.30861 * 110.92914 * 179.97438 * 6 5 4 8 8 C 1.39678 * 107.86220 * 359.77494 * 7 6 5 9 9 C 1.36601 * 125.18775 * 95.88216 * 5 4 3 10 10 C 1.47153 * 126.88675 * 359.97438 * 9 5 4 11 11 O 1.21629 * 120.00312 * 334.11948 * 10 9 5 12 12 N 1.34775 * 120.00072 * 154.11955 * 10 9 5 13 13 C 1.46934 * 120.63136 * 353.42731 * 12 10 9 14 14 C 1.53187 * 108.77688 * 233.58819 * 13 12 10 15 15 C 1.53044 * 109.33933 * 305.34863 * 14 13 12 16 16 H 1.08999 * 109.45993 * 181.40047 * 15 14 13 17 17 N 1.46501 * 109.46015 * 301.35947 * 15 14 13 18 18 C 1.36937 * 119.99895 * 275.00128 * 17 15 14 19 19 H 1.07998 * 120.00036 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00049 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99705 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00240 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47320 * 60.00056 * 22 20 18 24 24 H 1.48496 * 109.47384 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47038 * 300.00289 * 22 20 18 26 26 C 1.53106 * 109.50304 * 61.34659 * 15 14 13 27 27 H 1.09004 * 109.51149 * 58.63735 * 26 15 14 28 28 C 1.52998 * 109.48616 * 178.69955 * 26 15 14 29 29 C 1.46927 * 120.63257 * 173.40608 * 12 10 9 30 30 H 1.08995 * 109.47100 * 299.99616 * 1 2 3 31 31 H 1.09004 * 109.47501 * 59.99908 * 1 2 3 32 32 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46788 * 60.00148 * 3 2 1 34 34 H 1.08996 * 109.47561 * 299.99988 * 3 2 1 35 35 H 1.08996 * 109.46912 * 55.30934 * 4 3 2 36 36 H 1.09008 * 109.46999 * 295.31003 * 4 3 2 37 37 H 1.07995 * 126.06923 * 180.02562 * 7 6 5 38 38 H 1.07991 * 127.32333 * 180.27113 * 8 7 6 39 39 H 1.08995 * 109.58364 * 113.79944 * 13 12 10 40 40 H 1.09004 * 109.58162 * 353.37290 * 13 12 10 41 41 H 1.09000 * 109.49954 * 65.31159 * 14 13 12 42 42 H 1.09001 * 109.50227 * 185.37825 * 14 13 12 43 43 H 0.97000 * 119.99898 * 94.99838 * 17 15 14 44 44 H 0.97000 * 120.00396 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.47067 * 179.85350 * 28 26 15 46 46 H 1.09005 * 109.47361 * 299.85369 * 28 26 15 47 47 H 1.08998 * 109.47485 * 59.85571 * 28 26 15 48 48 H 1.08999 * 109.58819 * 246.19991 * 29 12 10 49 49 H 1.08998 * 109.59028 * 6.48317 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1308 2.5186 -0.1135 6 7 4.3258 3.1514 -1.2141 7 6 4.8733 4.3189 -0.9913 8 6 5.0444 4.4557 0.3882 9 6 4.5629 3.2791 0.9357 10 6 4.5190 2.9220 2.3626 11 8 3.6874 2.1316 2.7664 12 7 5.4003 3.4708 3.2220 13 6 6.4991 4.3137 2.7310 14 6 7.8216 3.7682 3.2788 15 6 7.7373 3.6720 4.8039 16 1 8.6860 3.3075 5.1978 17 7 7.4542 4.9968 5.3617 18 6 8.4800 5.8708 5.6046 19 1 9.4976 5.5837 5.3847 20 6 8.2118 7.1263 6.1326 21 7 6.9715 7.4763 6.4002 22 14 9.6109 8.3188 6.4634 23 1 10.3249 8.6086 5.1939 24 1 9.0637 9.5811 7.0222 25 1 10.5564 7.7149 7.4364 26 6 6.6165 2.7045 5.1938 27 1 6.8137 1.7246 4.7590 28 6 6.5538 2.5837 6.7177 29 6 5.2803 3.2379 4.6677 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8511 0.5732 -0.8458 36 1 3.8633 0.7179 0.9282 37 1 5.1411 5.0490 -1.7407 38 1 5.4644 5.2994 0.9155 39 1 6.3557 5.3379 3.0752 40 1 6.5179 4.2913 1.6414 41 1 8.0077 2.7786 2.8616 42 1 8.6348 4.4389 3.0010 43 1 6.5402 5.2548 5.5588 44 1 6.7840 8.3535 6.7695 45 1 5.7540 1.8969 6.9951 46 1 7.5047 2.2041 7.0916 47 1 6.3578 3.5639 7.1522 48 1 5.0376 4.1745 5.1698 49 1 4.4933 2.5077 4.8562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036070610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:14 Heat of formation + Delta-G solvation = 25.431109 kcal Electronic energy + Delta-G solvation = -30409.369046 eV Core-core repulsion = 26374.425271 eV Total energy + Delta-G solvation = -4034.943775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68721 -39.86615 -38.24491 -37.68027 -34.69288 -33.83871 -32.98468 -31.50422 -30.82261 -29.51918 -29.20395 -26.61687 -26.37690 -25.31877 -23.76410 -23.56502 -22.37613 -21.82816 -21.38658 -19.53723 -18.55171 -17.39115 -17.27558 -16.71714 -16.52536 -16.31995 -15.89586 -15.54495 -15.08782 -14.81454 -14.53809 -14.36389 -14.14261 -13.99747 -13.82861 -13.40545 -13.31941 -13.16023 -12.82829 -12.53609 -12.37920 -12.12768 -11.79674 -11.65214 -11.60356 -11.42944 -11.22680 -10.92270 -10.82654 -10.81599 -10.53564 -10.42814 -10.24737 -10.01376 -9.90195 -9.87586 -9.58270 -9.31589 -9.04337 -8.89466 -8.31720 -7.00829 -5.81861 -3.10376 1.24335 2.10668 2.52659 3.03345 3.21471 3.40113 3.45621 3.46219 3.66993 4.34041 4.44376 4.55050 4.63814 4.82384 4.98493 5.03250 5.07858 5.11639 5.15543 5.27706 5.32728 5.35753 5.38855 5.43064 5.51483 5.56151 5.58390 5.69036 5.72051 5.80295 5.88054 6.00850 6.05450 6.19047 6.29474 6.36153 6.39772 6.46353 6.56365 6.57650 6.66009 6.72959 6.76316 6.89198 6.94991 7.53726 7.65813 7.93845 8.17912 8.36646 9.48312 10.04475 10.39692 11.40426 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002953 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.668031 B = 9479.496599 C =10349.986889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.261 5.261 6 N -0.282 5.282 7 C 0.000 4.000 8 C -0.190 4.190 9 C -0.024 4.024 10 C 0.584 3.416 11 O -0.550 6.550 12 N -0.581 5.581 13 C 0.092 3.908 14 C -0.149 4.149 15 C 0.178 3.822 16 H 0.051 0.949 17 N -0.718 5.718 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.108 4.108 27 H 0.066 0.934 28 C -0.137 4.137 29 C 0.121 3.879 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -11.361 -12.556 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.305 6.305 3 C -0.023 4.023 4 C 0.006 3.994 5 N -0.050 5.050 6 N -0.114 5.114 7 C -0.176 4.176 8 C -0.218 4.218 9 C -0.153 4.153 10 C 0.370 3.630 11 O -0.430 6.430 12 N -0.311 5.311 13 C -0.030 4.030 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.069 0.931 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.128 4.128 27 H 0.084 0.916 28 C -0.195 4.195 29 C -0.001 4.001 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.205 0.795 38 H 0.190 0.810 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.352 -12.687 -13.120 20.071 hybrid contribution 0.660 1.777 0.825 2.067 sum -7.692 -10.910 -12.295 18.149 Atomic orbital electron populations 1.22769 0.80131 1.02994 1.00309 1.87775 1.20408 1.26755 1.95575 1.22660 0.92387 0.85570 1.01727 1.21679 0.92740 0.78701 1.06293 1.45437 1.42674 1.14613 1.02247 1.73181 1.18988 1.08505 1.10694 1.23635 1.02930 0.94947 0.96118 1.22601 1.05882 0.98690 0.94671 1.21518 1.08205 0.94836 0.90696 1.16940 0.81736 0.80843 0.83459 1.90779 1.38440 1.35121 1.78632 1.47832 1.27488 1.48757 1.07048 1.22400 0.85678 0.95259 0.99626 1.22525 0.96650 0.99765 1.00098 1.20240 0.95448 0.86915 0.90654 0.93075 1.42460 1.07358 1.10964 1.75273 1.19168 0.88502 0.94224 1.35032 0.91305 1.24696 0.96151 0.97840 1.02007 1.69631 1.17200 1.21191 1.50061 0.86316 0.81468 0.80707 0.77946 1.21345 1.21821 1.21388 1.21714 0.95467 0.98932 0.96659 0.91572 1.21668 1.00867 1.02615 0.94364 1.21736 0.98279 1.02082 0.78013 0.93659 0.93962 0.89225 0.91646 0.92557 0.87676 0.86525 0.79514 0.81045 0.89344 0.89063 0.93400 0.90561 0.78125 0.93460 0.93740 0.92739 0.90982 0.90241 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.41 10.70 -35.23 -0.38 -4.79 16 3 C 0.05 0.63 6.26 37.16 0.23 0.86 16 4 C 0.13 1.51 6.19 -4.04 -0.02 1.49 16 5 N -0.26 -3.51 3.35 -57.13 -0.19 -3.70 16 6 N -0.28 -3.72 11.90 30.59 0.36 -3.35 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -2.39 8.61 -38.98 -0.34 -2.73 16 9 C -0.02 -0.35 6.47 -82.06 -0.53 -0.88 16 10 C 0.58 9.33 7.45 -12.64 -0.09 9.24 16 11 O -0.55 -9.73 14.75 5.25 0.08 -9.66 16 12 N -0.58 -9.13 2.97 -174.14 -0.52 -9.64 16 13 C 0.09 1.41 4.96 -3.71 -0.02 1.39 16 14 C -0.15 -2.39 5.78 -26.61 -0.15 -2.55 16 15 C 0.18 3.20 2.54 -67.85 -0.17 3.02 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -15.90 3.64 -53.35 -0.19 -16.09 16 18 C -0.24 -6.04 9.93 -15.06 -0.15 -6.18 16 19 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.45 13.06 55.49 0.72 -25.72 16 22 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.11 -1.70 2.67 -90.47 -0.24 -1.94 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.14 -2.13 9.05 37.16 0.34 -1.79 16 29 C 0.12 1.96 5.43 -3.71 -0.02 1.93 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.12 1.50 6.71 -51.92 -0.35 1.15 16 37 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.17 1.99 6.27 -52.49 -0.33 1.66 16 39 H 0.09 1.56 7.74 -51.93 -0.40 1.15 16 40 H 0.09 1.23 4.03 -51.93 -0.21 1.02 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.38 9.10 5.93 -40.82 -0.24 8.86 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.30 7.53 -51.93 -0.39 0.91 16 48 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 49 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -29.98 388.81 -7.31 -37.29 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.67 Total: 10.81 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.36 Total: 2.65 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.19 Total: -58.51 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.30 Total: -14.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.98 -7.31 -37.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.722 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds