Wall clock time and date at job start Tue Mar 31 2020 19:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99588 * 2 1 4 4 C 1.53004 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47064 * 175.31219 * 4 3 2 6 6 N 1.28440 * 125.19024 * 275.90452 * 5 4 3 7 7 C 1.30861 * 110.92914 * 179.97438 * 6 5 4 8 8 C 1.39678 * 107.86220 * 359.77494 * 7 6 5 9 9 C 1.36601 * 125.18775 * 95.88216 * 5 4 3 10 10 C 1.47153 * 126.88675 * 359.97438 * 9 5 4 11 11 O 1.21629 * 120.00312 * 334.11948 * 10 9 5 12 12 N 1.34775 * 120.00072 * 154.11955 * 10 9 5 13 13 C 1.46934 * 120.63136 * 353.42731 * 12 10 9 14 14 C 1.53187 * 108.77688 * 233.58819 * 13 12 10 15 15 C 1.53044 * 109.33933 * 305.34863 * 14 13 12 16 16 H 1.08999 * 109.45993 * 181.40047 * 15 14 13 17 17 N 1.46501 * 109.46015 * 301.35947 * 15 14 13 18 18 C 1.36937 * 119.99895 * 275.00128 * 17 15 14 19 19 H 1.07998 * 120.00036 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00049 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99705 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00240 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47320 * 60.00056 * 22 20 18 24 24 H 1.48496 * 109.47384 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47038 * 300.00289 * 22 20 18 26 26 C 1.53106 * 109.50304 * 61.34659 * 15 14 13 27 27 H 1.09004 * 109.51149 * 58.63735 * 26 15 14 28 28 C 1.52998 * 109.48616 * 178.69955 * 26 15 14 29 29 C 1.46927 * 120.63257 * 173.40608 * 12 10 9 30 30 H 1.08995 * 109.47100 * 299.99616 * 1 2 3 31 31 H 1.09004 * 109.47501 * 59.99908 * 1 2 3 32 32 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46788 * 60.00148 * 3 2 1 34 34 H 1.08996 * 109.47561 * 299.99988 * 3 2 1 35 35 H 1.08996 * 109.46912 * 55.30934 * 4 3 2 36 36 H 1.09008 * 109.46999 * 295.31003 * 4 3 2 37 37 H 1.07995 * 126.06923 * 180.02562 * 7 6 5 38 38 H 1.07991 * 127.32333 * 180.27113 * 8 7 6 39 39 H 1.08995 * 109.58364 * 113.79944 * 13 12 10 40 40 H 1.09004 * 109.58162 * 353.37290 * 13 12 10 41 41 H 1.09000 * 109.49954 * 65.31159 * 14 13 12 42 42 H 1.09001 * 109.50227 * 185.37825 * 14 13 12 43 43 H 0.97000 * 119.99898 * 94.99838 * 17 15 14 44 44 H 0.97000 * 120.00396 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.47067 * 179.85350 * 28 26 15 46 46 H 1.09005 * 109.47361 * 299.85369 * 28 26 15 47 47 H 1.08998 * 109.47485 * 59.85571 * 28 26 15 48 48 H 1.08999 * 109.58819 * 246.19991 * 29 12 10 49 49 H 1.08998 * 109.59028 * 6.48317 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1308 2.5186 -0.1135 6 7 4.3258 3.1514 -1.2141 7 6 4.8733 4.3189 -0.9913 8 6 5.0444 4.4557 0.3882 9 6 4.5629 3.2791 0.9357 10 6 4.5190 2.9220 2.3626 11 8 3.6874 2.1316 2.7664 12 7 5.4003 3.4708 3.2220 13 6 6.4991 4.3137 2.7310 14 6 7.8216 3.7682 3.2788 15 6 7.7373 3.6720 4.8039 16 1 8.6860 3.3075 5.1978 17 7 7.4542 4.9968 5.3617 18 6 8.4800 5.8708 5.6046 19 1 9.4976 5.5837 5.3847 20 6 8.2118 7.1263 6.1326 21 7 6.9715 7.4763 6.4002 22 14 9.6109 8.3188 6.4634 23 1 10.3249 8.6086 5.1939 24 1 9.0637 9.5811 7.0222 25 1 10.5564 7.7149 7.4364 26 6 6.6165 2.7045 5.1938 27 1 6.8137 1.7246 4.7590 28 6 6.5538 2.5837 6.7177 29 6 5.2803 3.2379 4.6677 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8511 0.5732 -0.8458 36 1 3.8633 0.7179 0.9282 37 1 5.1411 5.0490 -1.7407 38 1 5.4644 5.2994 0.9155 39 1 6.3557 5.3379 3.0752 40 1 6.5179 4.2913 1.6414 41 1 8.0077 2.7786 2.8616 42 1 8.6348 4.4389 3.0010 43 1 6.5402 5.2548 5.5588 44 1 6.7840 8.3535 6.7695 45 1 5.7540 1.8969 6.9951 46 1 7.5047 2.2041 7.0916 47 1 6.3578 3.5639 7.1522 48 1 5.0376 4.1745 5.1698 49 1 4.4933 2.5077 4.8562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036070610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:13 Heat of formation + Delta-G solvation = 6.871611 kcal Electronic energy + Delta-G solvation = -30410.173846 eV Core-core repulsion = 26374.425271 eV Total energy + Delta-G solvation = -4035.748575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.69279 -41.16404 -39.14413 -38.99057 -36.08179 -34.98831 -34.48372 -33.04925 -31.92015 -30.93605 -30.38024 -27.69677 -27.33172 -26.74331 -25.40610 -24.63439 -23.54186 -23.10198 -22.50209 -20.65784 -19.88798 -19.24770 -18.41361 -17.80632 -17.60923 -17.18061 -16.90065 -16.76550 -16.42277 -16.14836 -15.88761 -15.65613 -15.48760 -15.07927 -14.99062 -14.85574 -14.48667 -14.31619 -14.23549 -13.89341 -13.50667 -13.18619 -12.99165 -12.91730 -12.80436 -12.69470 -12.61026 -12.40669 -12.37425 -12.14382 -12.00829 -11.92498 -11.68682 -11.55996 -11.20647 -11.12634 -10.84005 -10.81581 -10.32697 -10.01272 -9.64568 -8.88822 -7.85379 -5.11206 0.14917 1.11819 1.52961 1.53464 1.56598 1.59249 1.88617 2.01296 2.62773 2.82307 3.27729 3.42221 3.48560 3.76521 3.84576 3.88996 3.92527 4.05166 4.08833 4.10700 4.14700 4.31920 4.39768 4.40848 4.41848 4.48235 4.52099 4.54869 4.64022 4.65942 4.71953 4.77493 4.81302 4.85205 4.98901 5.03299 5.15307 5.20441 5.30058 5.30788 5.44741 5.49358 5.60729 5.63976 5.64690 5.96294 6.27693 6.36359 6.87078 7.01157 7.44400 8.20068 8.44182 9.37526 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002953 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.668031 B = 9479.496599 C =10349.986889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.064 3.936 4 C 0.126 3.874 5 N -0.264 5.264 6 N -0.291 5.291 7 C 0.008 3.992 8 C -0.187 4.187 9 C -0.046 4.046 10 C 0.584 3.416 11 O -0.571 6.571 12 N -0.581 5.581 13 C 0.101 3.899 14 C -0.142 4.142 15 C 0.172 3.828 16 H 0.047 0.953 17 N -0.723 5.723 18 C -0.226 4.226 19 H 0.074 0.926 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.961 3.039 23 H -0.279 1.279 24 H -0.303 1.303 25 H -0.284 1.284 26 C -0.098 4.098 27 H 0.084 0.916 28 C -0.131 4.131 29 C 0.126 3.874 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.223 0.777 38 H 0.181 0.819 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.374 0.626 44 H 0.247 0.753 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 -12.322 -14.413 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.013 4.013 4 C 0.005 3.995 5 N -0.053 5.053 6 N -0.123 5.123 7 C -0.168 4.168 8 C -0.215 4.215 9 C -0.174 4.174 10 C 0.372 3.628 11 O -0.452 6.452 12 N -0.311 5.311 13 C -0.020 4.020 14 C -0.183 4.183 15 C 0.064 3.936 16 H 0.065 0.935 17 N -0.364 5.364 18 C -0.358 4.358 19 H 0.092 0.908 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.792 3.208 23 H -0.205 1.205 24 H -0.230 1.230 25 H -0.211 1.211 26 C -0.118 4.118 27 H 0.103 0.897 28 C -0.189 4.189 29 C 0.004 3.996 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.239 0.761 38 H 0.198 0.802 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.208 0.792 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.701 -13.693 -15.004 21.723 hybrid contribution 0.428 1.984 1.354 2.440 sum -7.273 -11.709 -13.650 19.399 Atomic orbital electron populations 1.22996 0.78550 1.04488 1.00875 1.87752 1.22187 1.26548 1.95631 1.22495 0.92212 0.85666 1.00975 1.21728 0.92927 0.78439 1.06366 1.45550 1.42755 1.14930 1.02037 1.73200 1.19308 1.09184 1.10569 1.24222 1.01461 0.94816 0.96316 1.22783 1.05224 0.98178 0.95344 1.21415 1.09942 0.96014 0.90046 1.17156 0.81129 0.80313 0.84203 1.90764 1.39123 1.36108 1.79209 1.47817 1.27682 1.48822 1.06789 1.22315 0.85157 0.93713 1.00855 1.22405 0.96766 1.00863 0.98246 1.20445 0.96015 0.85348 0.91826 0.93483 1.42553 1.06243 1.12147 1.75449 1.19509 0.89355 0.94311 1.32613 0.90774 1.25340 0.97875 0.99675 1.03423 1.69782 1.18897 1.21087 1.52122 0.85390 0.79122 0.78424 0.77857 1.20531 1.22994 1.21081 1.21634 0.94273 0.98965 0.96901 0.89750 1.21601 1.01934 1.01409 0.93985 1.21598 0.98578 1.01015 0.78430 0.93792 0.92695 0.87342 0.93595 0.91971 0.86040 0.87728 0.76074 0.80227 0.91855 0.86756 0.91260 0.91139 0.79217 0.94399 0.91641 0.92219 0.93971 0.92404 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.83 10.70 -148.98 -1.59 -10.43 16 3 C 0.06 1.45 6.26 71.98 0.45 1.90 16 4 C 0.13 2.89 6.19 86.38 0.53 3.42 16 5 N -0.26 -6.72 3.35 -334.67 -1.12 -7.84 16 6 N -0.29 -7.01 11.90 -57.14 -0.68 -7.69 16 7 C 0.01 0.16 12.03 85.19 1.02 1.19 16 8 C -0.19 -4.32 8.61 22.66 0.20 -4.13 16 9 C -0.05 -1.27 6.47 40.79 0.26 -1.01 16 10 C 0.58 18.33 7.45 86.58 0.64 18.97 16 11 O -0.57 -20.16 14.75 -4.12 -0.06 -20.22 16 12 N -0.58 -17.91 2.97 -823.09 -2.45 -20.36 16 13 C 0.10 2.99 4.96 86.36 0.43 3.42 16 14 C -0.14 -4.32 5.78 30.67 0.18 -4.14 16 15 C 0.17 6.04 2.54 45.04 0.11 6.16 16 16 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 17 N -0.72 -32.19 3.64 -322.70 -1.17 -33.36 16 18 C -0.23 -11.42 9.93 84.03 0.83 -10.59 16 19 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 22 Si 0.96 44.22 29.55 68.60 2.03 46.25 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C -0.10 -3.00 2.67 -10.70 -0.03 -3.02 16 27 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 28 C -0.13 -3.99 9.05 71.98 0.65 -3.34 16 29 C 0.13 4.07 5.43 86.36 0.47 4.54 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.10 2.65 6.71 -2.38 -0.02 2.64 16 37 H 0.22 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.18 3.81 6.27 -2.92 -0.02 3.79 16 39 H 0.06 2.23 7.74 -2.39 -0.02 2.21 16 40 H 0.11 2.85 4.03 -2.38 -0.01 2.84 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.37 18.23 5.93 -92.71 -0.55 17.68 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 45 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 48 H 0.06 2.13 6.64 -2.39 -0.02 2.11 16 49 H 0.09 2.82 7.00 -2.39 -0.02 2.80 16 Total: -1.00 -64.33 388.81 3.12 -61.22 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.41 Total: 36.66 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 7.48 Total: 11.67 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.14 Total: -125.15 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.66 Total: -30.65 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.33 3.12 -61.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.087 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds