Wall clock time and date at job start Tue Mar 31 2020 19:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00113 * 2 1 4 4 C 1.50701 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.30443 * 125.98821 * 270.16802 * 4 3 2 6 6 N 1.39937 * 108.89342 * 180.26611 * 5 4 3 7 7 C 1.46502 * 125.74924 * 179.73865 * 6 5 4 8 8 C 1.34255 * 108.49438 * 359.73598 * 6 5 4 9 9 C 1.38045 * 107.41588 * 359.97438 * 8 6 5 10 10 C 1.47432 * 126.41526 * 179.97438 * 9 8 6 11 11 O 1.21595 * 120.00339 * 230.50820 * 10 9 8 12 12 N 1.34781 * 119.99770 * 50.51520 * 10 9 8 13 13 C 1.46929 * 120.62972 * 355.61879 * 12 10 9 14 14 C 1.53191 * 108.77432 * 126.41507 * 13 12 10 15 15 C 1.53042 * 109.31335 * 54.63597 * 14 13 12 16 16 H 1.09004 * 109.44789 * 58.64440 * 15 14 13 17 17 N 1.46490 * 109.46493 * 178.61359 * 15 14 13 18 18 C 1.36932 * 120.00217 * 275.06958 * 17 15 14 19 19 H 1.08002 * 120.00120 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00410 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00367 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99872 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47555 * 269.99946 * 22 20 18 24 24 H 1.48502 * 109.47059 * 30.00012 * 22 20 18 25 25 H 1.48501 * 109.47453 * 149.99855 * 22 20 18 26 26 C 1.53040 * 109.53731 * 298.63676 * 15 14 13 27 27 H 1.09001 * 109.50209 * 301.41053 * 26 15 14 28 28 C 1.53003 * 109.49931 * 181.31181 * 26 15 14 29 29 C 1.46920 * 120.63166 * 175.64618 * 12 10 9 30 30 H 1.09004 * 109.47394 * 300.00506 * 1 2 3 31 31 H 1.09002 * 109.46758 * 60.00472 * 1 2 3 32 32 H 1.08997 * 109.46760 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46966 * 59.99137 * 3 2 1 34 34 H 1.09003 * 109.46561 * 299.99764 * 3 2 1 35 35 H 1.09002 * 109.46780 * 269.98983 * 7 6 5 36 36 H 1.08994 * 109.47568 * 29.99818 * 7 6 5 37 37 H 1.09002 * 109.46941 * 149.99793 * 7 6 5 38 38 H 1.07996 * 126.29484 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.59064 * 246.20686 * 13 12 10 40 40 H 1.09002 * 109.58527 * 6.48846 * 13 12 10 41 41 H 1.09004 * 109.49875 * 294.68651 * 14 13 12 42 42 H 1.08994 * 109.50024 * 174.58740 * 14 13 12 43 43 H 0.97000 * 120.00341 * 95.06654 * 17 15 14 44 44 H 0.96998 * 120.00058 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.46664 * 60.00009 * 28 26 15 46 46 H 1.09000 * 109.47442 * 179.97438 * 28 26 15 47 47 H 1.08997 * 109.47273 * 300.00089 * 28 26 15 48 48 H 1.09002 * 109.58560 * 113.79520 * 29 12 10 49 49 H 1.09003 * 109.70210 * 353.44113 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2760 1.1230 1.0564 6 7 5.6101 1.0247 0.6457 7 6 6.7741 0.9374 1.5310 8 6 5.6435 1.0237 -0.6965 9 6 4.3406 1.1201 -1.1423 10 6 3.8968 1.1548 -2.5478 11 8 3.1366 2.0261 -2.9240 12 7 4.3337 0.2207 -3.4157 13 6 5.3257 -0.7806 -3.0011 14 6 4.7781 -2.1765 -3.3150 15 6 4.3931 -2.2482 -4.7945 16 1 5.2676 -2.0310 -5.4080 17 7 3.8999 -3.5919 -5.1060 18 6 4.7834 -4.5895 -5.4214 19 1 5.8438 -4.3856 -5.4409 20 6 4.3161 -5.8629 -5.7160 21 7 5.1653 -6.8219 -6.0187 22 14 2.4820 -6.2157 -5.6830 23 1 2.0869 -6.6557 -4.3209 24 1 1.7345 -4.9836 -6.0415 25 1 2.1664 -7.2881 -6.6606 26 6 3.2966 -1.2218 -5.0883 27 1 2.4311 -1.4232 -4.4572 28 6 2.8894 -1.3167 -6.5601 29 6 3.8274 0.1849 -4.7944 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 7.1388 1.9407 1.7516 36 1 6.4885 0.4423 2.4591 37 1 7.5612 0.3644 1.0409 38 1 6.5273 0.9593 -1.3139 39 1 6.2556 -0.6216 -3.5469 40 1 5.5104 -0.6906 -1.9306 41 1 3.8986 -2.3690 -2.7005 42 1 5.5424 -2.9236 -3.1014 43 1 2.9476 -3.7752 -5.0888 44 1 4.8387 -7.7117 -6.2249 45 1 2.5145 -2.3186 -6.7694 46 1 2.1081 -0.5858 -6.7688 47 1 3.7551 -1.1137 -7.1905 48 1 4.6352 0.4227 -5.4866 49 1 3.0222 0.9106 -4.9092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036078708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:24 Heat of formation + Delta-G solvation = -5.514386 kcal Electronic energy + Delta-G solvation = -30467.086934 eV Core-core repulsion = 26430.801262 eV Total energy + Delta-G solvation = -4036.285672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.60814 -40.86881 -38.98978 -38.77449 -36.24146 -34.67666 -34.47217 -33.22868 -31.72159 -31.35421 -29.97213 -27.90501 -27.37567 -26.79868 -25.85865 -24.36650 -23.03366 -22.87837 -21.66759 -21.20461 -20.21935 -19.42228 -18.25672 -17.67232 -17.49479 -16.92486 -16.76759 -16.66041 -16.40281 -16.12836 -16.02408 -15.87844 -15.25727 -14.99147 -14.81231 -14.73161 -14.42022 -13.93552 -13.74892 -13.71178 -13.52132 -13.40642 -13.23794 -13.17098 -12.95819 -12.92522 -12.80373 -12.42866 -12.39389 -12.06027 -12.02812 -11.95358 -11.84483 -11.74743 -11.16729 -11.03912 -10.90132 -10.72638 -10.50504 -9.76231 -9.55812 -9.23704 -7.98689 -5.29761 0.57954 0.95012 1.38230 1.38721 1.39964 1.46962 1.77563 2.22965 2.50422 2.90975 3.33283 3.36988 3.57284 3.66788 3.73470 3.92259 3.97112 4.05433 4.07995 4.18449 4.28756 4.29844 4.39032 4.42962 4.46171 4.48785 4.50614 4.53091 4.64843 4.72570 4.75462 4.79421 4.80669 4.80969 4.86653 4.97235 5.03807 5.17283 5.23549 5.30750 5.39798 5.51421 5.64778 5.82278 5.87098 6.06666 6.25901 6.39297 6.48896 7.11897 7.16979 7.89406 8.07431 9.22898 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003411 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.472196 B = 8207.076350 C = 8495.751530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.139 3.861 4 C 0.102 3.898 5 N -0.304 5.304 6 N -0.352 5.352 7 C 0.085 3.915 8 C 0.112 3.888 9 C -0.296 4.296 10 C 0.599 3.401 11 O -0.580 6.580 12 N -0.599 5.599 13 C 0.113 3.887 14 C -0.143 4.143 15 C 0.184 3.816 16 H 0.055 0.945 17 N -0.749 5.749 18 C -0.216 4.216 19 H 0.065 0.935 20 C -0.060 4.060 21 N -0.984 5.984 22 Si 0.943 3.057 23 H -0.286 1.286 24 H -0.254 1.254 25 H -0.298 1.298 26 C -0.104 4.104 27 H 0.056 0.944 28 C -0.134 4.134 29 C 0.129 3.871 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.227 0.773 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.361 0.639 44 H 0.255 0.745 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 20.951 13.854 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.061 3.939 4 C -0.065 4.065 5 N -0.129 5.129 6 N -0.131 5.131 7 C -0.054 4.054 8 C -0.039 4.039 9 C -0.311 4.311 10 C 0.388 3.612 11 O -0.460 6.460 12 N -0.330 5.330 13 C -0.010 4.010 14 C -0.183 4.183 15 C 0.076 3.924 16 H 0.073 0.927 17 N -0.391 5.391 18 C -0.347 4.347 19 H 0.083 0.917 20 C -0.252 4.252 21 N -0.635 5.635 22 Si 0.771 3.229 23 H -0.212 1.212 24 H -0.179 1.179 25 H -0.225 1.225 26 C -0.124 4.124 27 H 0.074 0.926 28 C -0.191 4.191 29 C 0.006 3.994 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.194 0.806 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.591 21.117 14.996 25.907 hybrid contribution -1.302 -0.914 -0.908 1.832 sum -0.711 20.203 14.088 24.640 Atomic orbital electron populations 1.22949 0.78728 1.03915 1.01237 1.87903 1.22010 1.27390 1.95670 1.20679 0.85327 0.85470 1.02416 1.21982 0.95906 0.98888 0.89680 1.77053 0.88043 1.25062 1.22700 1.48699 1.06119 1.52706 1.05548 1.22482 0.82784 1.05559 0.94565 1.23564 0.98783 0.96312 0.85279 1.20136 0.94101 1.23427 0.93483 1.17495 0.79192 0.80361 0.84127 1.90698 1.38469 1.37669 1.79197 1.48044 1.42955 1.30169 1.11834 1.22007 0.91124 0.85927 1.01949 1.22432 1.00766 0.96565 0.98578 1.20409 0.95393 0.83132 0.93462 0.92690 1.42818 1.04677 1.07455 1.84103 1.19030 0.90407 0.89071 1.36195 0.91737 1.25326 1.01017 0.96005 1.02826 1.69854 1.34805 1.02517 1.56338 0.85589 0.82281 0.77858 0.77137 1.21243 1.17915 1.22506 1.21666 0.98083 0.94758 0.97891 0.92575 1.21632 1.01724 1.01454 0.94339 1.21614 1.00179 0.95994 0.81625 0.91975 0.93377 0.88707 0.90119 0.90964 0.88310 0.88688 0.85677 0.75680 0.88591 0.88514 0.93944 0.91706 0.80643 0.93581 0.93895 0.91316 0.91940 0.89383 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -11.76 10.69 -148.98 -1.59 -13.35 16 3 C 0.14 3.64 6.33 71.24 0.45 4.09 16 4 C 0.10 2.81 6.89 43.52 0.30 3.11 16 5 N -0.30 -7.75 12.50 -46.68 -0.58 -8.33 16 6 N -0.35 -6.18 3.98 -367.78 -1.46 -7.64 16 7 C 0.08 0.58 11.44 127.77 1.46 2.04 16 8 C 0.11 1.94 9.13 84.28 0.77 2.71 16 9 C -0.30 -7.60 5.14 -20.15 -0.10 -7.70 16 10 C 0.60 17.44 7.35 86.66 0.64 18.07 16 11 O -0.58 -20.18 15.66 -4.01 -0.06 -20.24 16 12 N -0.60 -15.66 2.97 -822.79 -2.45 -18.11 16 13 C 0.11 2.60 5.91 86.36 0.51 3.11 16 14 C -0.14 -4.56 5.66 30.67 0.17 -4.38 16 15 C 0.18 6.50 2.19 45.02 0.10 6.60 16 16 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 17 N -0.75 -33.68 4.21 -322.83 -1.36 -35.04 16 18 C -0.22 -11.81 10.41 84.03 0.87 -10.94 16 19 H 0.06 3.81 8.06 -2.91 -0.02 3.78 16 20 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 21 N -0.98 -62.24 13.97 21.65 0.30 -61.94 16 22 Si 0.94 45.76 27.73 68.60 1.90 47.67 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 25 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 26 C -0.10 -3.14 2.46 -10.71 -0.03 -3.16 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 C -0.13 -3.86 9.03 71.98 0.65 -3.21 16 29 C 0.13 3.35 5.70 86.36 0.49 3.84 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.99 7.20 -2.39 -0.02 1.97 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.23 1.85 7.63 -2.91 -0.02 1.83 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.10 1.95 4.58 -2.39 -0.01 1.94 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.36 16.25 5.36 -92.71 -0.50 15.75 16 44 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.04 1.45 7.36 -2.39 -0.02 1.43 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.09 2.37 7.04 -2.39 -0.02 2.35 16 Total: -1.00 -80.07 394.21 3.10 -76.98 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.39 Total: 27.06 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 8.00 Total: 12.95 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.55 Total: -131.06 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.65 Total: -33.59 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.67 kcal Total: -80.07 3.10 -76.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036078708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.463 kcal (2) G-P(sol) polarization free energy of solvation -80.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds