Wall clock time and date at job start Tue Mar 31 2020 19:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99781 * 2 1 4 4 C 1.50704 * 109.46639 * 179.97438 * 3 2 1 5 5 N 1.30449 * 125.98497 * 90.03202 * 4 3 2 6 6 N 1.39936 * 108.89804 * 179.97438 * 5 4 3 7 7 C 1.46498 * 125.75390 * 179.73107 * 6 5 4 8 8 C 1.34256 * 108.48811 * 0.02562 * 6 5 4 9 9 C 1.38041 * 107.41971 * 359.97438 * 8 6 5 10 10 C 1.47434 * 126.41408 * 179.97438 * 9 8 6 11 11 O 1.21607 * 119.99529 * 217.03055 * 10 9 8 12 12 N 1.34772 * 120.00346 * 37.02649 * 10 9 8 13 13 C 1.46931 * 120.62975 * 5.64796 * 12 10 9 14 14 C 1.53621 * 108.54027 * 126.36927 * 13 12 10 15 15 C 1.53040 * 109.24282 * 54.85877 * 14 13 12 16 16 H 1.09002 * 109.46140 * 178.49007 * 15 14 13 17 17 N 1.46502 * 109.46145 * 58.53055 * 15 14 13 18 18 C 1.36931 * 120.00122 * 84.92864 * 17 15 14 19 19 H 1.08002 * 119.99881 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00157 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47304 * 89.99842 * 22 20 18 24 24 H 1.48494 * 109.47126 * 209.99782 * 22 20 18 25 25 H 1.48498 * 109.47009 * 329.99971 * 22 20 18 26 26 C 1.53040 * 109.54024 * 298.50850 * 15 14 13 27 27 H 1.08997 * 109.52355 * 301.40312 * 26 15 14 28 28 C 1.52994 * 109.50217 * 181.31509 * 26 15 14 29 29 C 1.46922 * 120.63260 * 185.93129 * 12 10 9 30 30 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47132 * 299.99900 * 1 2 3 32 32 H 1.09010 * 109.46975 * 60.00138 * 1 2 3 33 33 H 1.09002 * 109.47027 * 60.00026 * 3 2 1 34 34 H 1.08994 * 109.47562 * 299.99846 * 3 2 1 35 35 H 1.08996 * 109.47047 * 90.02807 * 7 6 5 36 36 H 1.09007 * 109.46873 * 210.02699 * 7 6 5 37 37 H 1.09002 * 109.47212 * 330.02454 * 7 6 5 38 38 H 1.08001 * 126.28774 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.58568 * 246.20460 * 13 12 10 40 40 H 1.08998 * 109.58487 * 6.63288 * 13 12 10 41 41 H 1.08998 * 109.63943 * 294.86901 * 14 13 12 42 42 H 1.09002 * 109.43279 * 174.72359 * 14 13 12 43 43 H 0.97000 * 120.00131 * 264.93687 * 17 15 14 44 44 H 0.96991 * 120.00315 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.47057 * 300.16551 * 28 26 15 46 46 H 1.08998 * 109.47026 * 60.15997 * 28 26 15 47 47 H 1.08998 * 109.47668 * 180.16718 * 28 26 15 48 48 H 1.08997 * 109.59037 * 353.37687 * 29 12 10 49 49 H 1.09004 * 109.58811 * 113.79534 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2771 1.1262 -1.0546 6 7 5.6104 1.0210 -0.6429 7 6 6.7742 0.9237 -1.5273 8 6 5.6425 1.0177 0.6993 9 6 4.3397 1.1206 1.1441 10 6 3.8948 1.1545 2.5493 11 8 2.8623 0.5999 2.8736 12 7 4.6323 1.8001 3.4743 13 6 5.8146 2.5780 3.0795 14 6 5.6747 3.9999 3.6440 15 6 5.4499 3.9224 5.1558 16 1 5.3769 4.9304 5.5643 17 7 6.5750 3.2229 5.7814 18 6 7.7094 3.9130 6.1162 19 1 7.7745 4.9729 5.9196 20 6 8.7756 3.2501 6.7084 21 7 8.6964 1.9583 6.9476 22 14 10.3228 4.1916 7.1659 23 1 10.1962 4.7083 8.5524 24 1 11.4966 3.2861 7.0804 25 1 10.5055 5.3288 6.2287 26 6 4.1535 3.1612 5.4423 27 1 3.3191 3.6673 4.9568 28 6 3.9127 3.1126 6.9524 29 6 4.2729 1.7344 4.8974 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 7.1454 1.9239 -1.7506 36 1 7.5574 0.3470 -1.0350 37 1 6.4858 0.4277 -2.4541 38 1 6.5253 0.9474 1.3174 39 1 6.7120 2.1086 3.4822 40 1 5.8781 2.6198 1.9921 41 1 4.8263 4.4983 3.1752 42 1 6.5858 4.5623 3.4401 43 1 6.5164 2.2710 5.9582 44 1 9.4413 1.4952 7.3618 45 1 4.7480 2.6075 7.4374 46 1 3.8279 4.1280 7.3396 47 1 2.9909 2.5679 7.1561 48 1 3.3190 1.2192 5.0100 49 1 5.0473 1.1976 5.4454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036078711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:34 Heat of formation + Delta-G solvation = 20.405870 kcal Electronic energy + Delta-G solvation = -30563.324908 eV Core-core repulsion = 26528.163223 eV Total energy + Delta-G solvation = -4035.161686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58399 -39.54793 -37.81305 -37.39449 -34.23202 -33.73958 -32.89373 -31.37304 -30.52478 -29.14718 -29.07434 -26.83375 -26.13280 -25.37077 -24.58884 -23.52850 -22.02250 -21.62686 -20.51564 -19.38727 -18.33612 -17.35565 -16.89210 -16.62385 -16.28308 -15.79961 -15.61223 -15.40567 -15.14298 -14.87502 -14.47583 -14.25403 -13.97732 -13.67715 -13.48396 -13.27116 -13.00709 -12.92348 -12.68355 -12.51694 -12.35524 -12.22148 -12.07922 -11.54581 -11.44813 -11.37630 -11.19196 -10.93484 -10.90238 -10.77139 -10.46222 -10.42833 -10.20611 -9.81950 -9.73979 -9.56134 -9.55109 -9.48667 -8.95015 -8.64557 -8.10161 -6.98734 -5.81040 -3.09163 1.52021 2.00244 2.21488 3.28947 3.39072 3.44987 3.46303 3.46790 3.98001 4.29510 4.55332 4.60133 4.78159 4.89061 4.97902 5.01397 5.14866 5.20427 5.27040 5.29884 5.37242 5.39576 5.42109 5.49593 5.55844 5.60325 5.61819 5.71352 5.77065 5.85693 5.98192 6.09304 6.12211 6.27686 6.28348 6.34201 6.44301 6.53437 6.65354 6.69961 6.71935 6.81094 6.96150 7.06112 7.08759 7.45549 7.66720 7.83963 8.37705 8.56979 9.49297 10.06689 10.42057 11.41338 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.003402 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.806307 B = 8229.013911 C = 9632.374226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.150 3.850 4 C 0.121 3.879 5 N -0.283 5.283 6 N -0.360 5.360 7 C 0.097 3.903 8 C 0.097 3.903 9 C -0.262 4.262 10 C 0.589 3.411 11 O -0.543 6.543 12 N -0.599 5.599 13 C 0.109 3.891 14 C -0.148 4.148 15 C 0.179 3.821 16 H 0.050 0.950 17 N -0.719 5.719 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.108 4.108 27 H 0.065 0.935 28 C -0.137 4.137 29 C 0.122 3.878 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.190 0.810 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -0.497 -15.206 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.293 6.293 3 C 0.071 3.929 4 C -0.046 4.046 5 N -0.107 5.107 6 N -0.140 5.140 7 C -0.044 4.044 8 C -0.053 4.053 9 C -0.277 4.277 10 C 0.377 3.623 11 O -0.421 6.421 12 N -0.331 5.331 13 C -0.014 4.014 14 C -0.189 4.189 15 C 0.069 3.931 16 H 0.067 0.933 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.128 4.128 27 H 0.084 0.916 28 C -0.195 4.195 29 C 0.000 4.000 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.206 0.794 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.538 -0.861 -16.363 18.959 hybrid contribution 1.111 0.496 1.166 1.685 sum -8.428 -0.365 -15.197 17.381 Atomic orbital electron populations 1.22721 0.80726 1.02807 0.99886 1.87957 1.19658 1.26312 1.95362 1.20492 0.85166 0.85910 1.01321 1.21819 0.95358 0.98191 0.89271 1.77085 0.86501 1.24554 1.22526 1.48283 1.06157 1.54642 1.04902 1.22012 0.83905 1.03830 0.94634 1.23277 0.99110 0.98059 0.84834 1.20205 0.92128 1.20708 0.94641 1.17271 0.83193 0.78363 0.83506 1.90751 1.24046 1.46320 1.80982 1.47958 1.28543 1.49484 1.07091 1.22013 0.87907 0.92553 0.98929 1.22575 1.01043 0.95388 0.99924 1.20212 0.87137 0.95373 0.90424 0.93251 1.42482 1.13023 1.08877 1.71730 1.19215 0.92267 0.92687 1.32508 0.91316 1.24692 0.98440 0.95743 1.01934 1.69645 1.32056 1.07408 1.48974 0.86255 0.83330 0.78623 0.78338 1.21842 1.21936 1.20899 1.21697 0.98561 0.95978 0.96570 0.91636 1.21665 1.01296 1.01702 0.94838 1.21626 1.01711 0.97287 0.79422 0.89586 0.93677 0.94316 0.90802 0.91977 0.90076 0.88845 0.88951 0.79365 0.89892 0.90990 0.93340 0.90979 0.78073 0.93551 0.91076 0.92905 0.93754 0.89713 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.55 10.69 -35.23 -0.38 -5.92 16 3 C 0.15 2.04 5.96 36.01 0.21 2.25 16 4 C 0.12 1.83 6.89 -82.02 -0.56 1.27 16 5 N -0.28 -4.07 12.50 33.89 0.42 -3.64 16 6 N -0.36 -4.24 3.98 -67.60 -0.27 -4.51 16 7 C 0.10 0.66 11.44 59.85 0.68 1.34 16 8 C 0.10 1.22 9.07 -16.56 -0.15 1.07 16 9 C -0.26 -4.03 5.33 -105.07 -0.56 -4.59 16 10 C 0.59 10.20 7.39 -12.52 -0.09 10.11 16 11 O -0.54 -10.83 15.73 5.27 0.08 -10.75 16 12 N -0.60 -9.87 2.97 -173.77 -0.52 -10.38 16 13 C 0.11 1.69 5.13 -3.48 -0.02 1.67 16 14 C -0.15 -2.42 5.79 -26.39 -0.15 -2.58 16 15 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 N -0.72 -16.13 3.63 -53.38 -0.19 -16.32 16 18 C -0.24 -6.00 9.93 -15.06 -0.15 -6.15 16 19 H 0.07 1.73 7.83 -52.49 -0.41 1.31 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 22 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -2.20 9.06 37.15 0.34 -1.86 16 29 C 0.12 2.07 5.43 -3.71 -0.02 2.05 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.19 1.97 7.05 -52.49 -0.37 1.60 16 39 H 0.08 1.46 7.74 -51.93 -0.40 1.06 16 40 H 0.07 0.98 4.62 -51.93 -0.24 0.74 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.38 9.25 5.92 -40.82 -0.24 9.01 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 45 H 0.07 1.32 7.53 -51.93 -0.39 0.93 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 49 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -33.05 392.65 -6.89 -39.94 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.79 Total: 8.38 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.13 Total: 6.74 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.17 Total: -60.65 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.29 Total: -16.67 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.05 -6.89 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036078711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.341 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds