Wall clock time and date at job start Tue Mar 31 2020 19:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49577 * 2 1 4 4 C 1.53200 * 109.49396 * 239.93551 * 2 1 3 5 5 N 1.46923 * 108.77028 * 185.41318 * 4 2 1 6 6 C 1.34781 * 120.63067 * 233.62977 * 5 4 2 7 7 O 1.21494 * 119.99755 * 355.05321 * 6 5 4 8 8 C 1.48328 * 120.00243 * 175.05937 * 6 5 4 9 9 C 1.42269 * 126.93656 * 186.24784 * 8 6 5 10 10 C 1.35316 * 103.92053 * 179.88323 * 9 8 6 11 11 C 1.50706 * 126.66810 * 180.08187 * 10 9 8 12 12 N 1.46898 * 109.46973 * 90.32038 * 11 10 9 13 13 C 1.46897 * 111.00036 * 66.05157 * 12 11 10 14 14 C 1.46901 * 110.99747 * 190.00129 * 12 11 10 15 15 O 1.34017 * 106.66901 * 0.37280 * 10 9 8 16 16 N 1.20901 * 111.84085 * 359.74278 * 15 10 9 17 17 C 1.46924 * 118.74293 * 53.60798 * 5 4 2 18 18 C 1.53192 * 108.77581 * 306.39075 * 17 5 4 19 19 C 1.53035 * 109.49621 * 120.06619 * 2 1 3 20 20 H 1.09000 * 109.43695 * 61.28149 * 19 2 1 21 21 N 1.46500 * 109.48731 * 301.31559 * 19 2 1 22 22 C 1.36941 * 120.00087 * 154.91572 * 21 19 2 23 23 H 1.08000 * 119.99400 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99916 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00077 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99676 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47316 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47147 * 120.00520 * 26 24 22 29 29 H 1.48502 * 109.47029 * 239.99945 * 26 24 22 30 30 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46785 * 300.06218 * 1 2 3 32 32 H 1.09000 * 109.47308 * 60.06766 * 1 2 3 33 33 H 1.08995 * 109.58745 * 65.62529 * 4 2 1 34 34 H 1.09000 * 109.70209 * 305.26525 * 4 2 1 35 35 H 1.07997 * 128.04088 * 0.02562 * 9 8 6 36 36 H 1.08994 * 109.46996 * 210.32674 * 11 10 9 37 37 H 1.09005 * 109.46714 * 330.32230 * 11 10 9 38 38 H 1.08999 * 109.47106 * 59.99437 * 13 12 11 39 39 H 1.08997 * 109.47042 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46923 * 299.99658 * 13 12 11 41 41 H 1.09003 * 109.47407 * 60.00291 * 14 12 11 42 42 H 1.09002 * 109.47103 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47349 * 300.00213 * 14 12 11 44 44 H 1.09002 * 109.58956 * 186.59679 * 17 5 4 45 45 H 1.09004 * 109.58518 * 66.17970 * 17 5 4 46 46 H 1.09002 * 109.49401 * 174.58307 * 18 17 5 47 47 H 1.08991 * 109.49826 * 294.64901 * 18 17 5 48 48 H 0.96993 * 120.00190 * 334.92485 * 21 19 2 49 49 H 0.97001 * 119.99898 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2499 5 7 3.5045 -0.8288 -1.1699 6 6 4.2811 -0.3850 -2.1781 7 8 3.7717 0.0249 -3.2021 8 6 5.7577 -0.3971 -2.0376 9 6 6.7075 0.1453 -2.9474 10 6 7.9013 -0.1181 -2.3672 11 6 9.2623 0.2414 -2.9053 12 7 9.6512 1.5674 -2.4071 13 6 9.8455 1.5466 -0.9512 14 6 10.8561 2.0545 -3.0921 15 8 7.6384 -0.7664 -1.2241 16 7 6.4506 -0.9142 -1.0537 17 6 4.1053 -1.4267 0.0303 18 6 3.5709 -0.6953 1.2657 19 6 2.0408 -0.7227 1.2485 20 1 1.6963 -1.7568 1.2354 21 7 1.5272 -0.0525 2.4457 22 6 1.3958 -0.7491 3.6173 23 1 1.6711 -1.7926 3.6587 24 6 0.9087 -0.1142 4.7514 25 7 0.5727 1.1574 4.7006 26 14 0.7301 -1.0644 6.3497 27 1 1.1722 -2.4670 6.1438 28 1 1.5675 -0.4298 7.3991 29 1 -0.6921 -1.0518 6.7768 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5128 -0.8906 33 1 1.7637 -0.1574 -2.1390 34 1 1.6054 -1.7212 -1.3010 35 1 6.5194 0.6518 -3.8825 36 1 9.9908 -0.4990 -2.5749 37 1 9.2295 0.2578 -3.9947 38 1 10.6314 0.8344 -0.6997 39 1 10.1324 2.5408 -0.6087 40 1 8.9164 1.2493 -0.4649 41 1 10.6617 2.1265 -4.1622 42 1 11.1217 3.0381 -2.7045 43 1 11.6785 1.3607 -2.9180 44 1 5.1896 -1.3247 -0.0143 45 1 3.8376 -2.4819 0.0859 46 1 3.9335 -1.1903 2.1666 47 1 3.9164 0.3383 1.2544 48 1 1.2802 0.8848 2.4084 49 1 0.2320 1.6010 5.4931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036094924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:47 Heat of formation + Delta-G solvation = 62.132020 kcal Electronic energy + Delta-G solvation = -29714.163912 eV Core-core repulsion = 25680.811608 eV Total energy + Delta-G solvation = -4033.352304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.27628 -40.06250 -38.00194 -37.69139 -34.78382 -34.17128 -33.04296 -32.34490 -31.45010 -29.32586 -28.04072 -27.85290 -26.89396 -25.32726 -23.99198 -23.34509 -22.67669 -21.96513 -21.63351 -19.88870 -19.03827 -18.06790 -17.57031 -17.10273 -16.96838 -15.92627 -15.73736 -15.73117 -15.20940 -14.99822 -14.93253 -14.22256 -14.00726 -13.77369 -13.69167 -13.38427 -13.22461 -13.07559 -12.84711 -12.64445 -12.46492 -12.37795 -12.17190 -12.07836 -11.97915 -11.62060 -11.18484 -11.11091 -10.91778 -10.78415 -10.60905 -10.51898 -10.35906 -10.15757 -10.09385 -9.82478 -9.70824 -9.61317 -8.92274 -8.88564 -8.53291 -6.95154 -5.76963 -3.05446 0.92797 1.46914 2.57931 2.86637 3.13567 3.42481 3.48329 3.50418 3.55373 3.79299 4.09873 4.55336 4.58203 4.66580 4.73885 4.81388 4.90782 4.97288 5.14133 5.16688 5.21397 5.24612 5.26960 5.34927 5.40755 5.44206 5.56698 5.59033 5.65942 5.69617 5.78664 5.83490 6.03035 6.07476 6.22611 6.35836 6.36799 6.39705 6.42848 6.44378 6.53502 6.64981 6.83373 6.92487 7.07432 7.37332 7.70019 7.82069 8.08629 8.41319 9.52787 10.10241 10.45406 11.45678 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.002684 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.626368 B =10430.015409 C =11723.331075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.587 5.587 6 C 0.594 3.406 7 O -0.533 6.533 8 C -0.015 4.015 9 C -0.159 4.159 10 C -0.031 4.031 11 C 0.136 3.864 12 N -0.545 5.545 13 C 0.018 3.982 14 C 0.025 3.975 15 O 0.111 5.889 16 N -0.320 5.320 17 C 0.076 3.924 18 C -0.147 4.147 19 C 0.183 3.817 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.181 0.819 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.219 -2.086 -18.046 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.319 5.319 6 C 0.379 3.621 7 O -0.409 6.409 8 C -0.173 4.173 9 C -0.182 4.182 10 C -0.095 4.095 11 C 0.008 3.992 12 N -0.269 5.269 13 C -0.130 4.130 14 C -0.123 4.123 15 O 0.040 5.960 16 N -0.025 5.025 17 C -0.047 4.047 18 C -0.188 4.188 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.198 0.802 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.136 0.864 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.156 -2.313 -17.421 25.268 hybrid contribution 0.451 -0.292 0.666 0.855 sum 18.607 -2.605 -16.755 25.174 Atomic orbital electron populations 1.21657 0.93900 1.01838 1.01921 1.21749 0.96699 1.00040 0.94512 0.91201 1.21815 0.77544 1.01222 0.99591 1.48050 1.07310 1.58560 1.17983 1.16978 0.83160 0.78291 0.83633 1.90766 1.73474 1.48260 1.28419 1.23545 0.96945 1.03235 0.93625 1.22370 0.89191 1.03805 1.02795 1.24155 0.98219 0.99197 0.87904 1.20542 0.88066 0.90483 1.00136 1.61978 1.35308 1.23778 1.05872 1.22498 1.01499 1.02077 0.86900 1.22405 0.89748 1.00435 0.99699 1.84818 1.20028 1.55847 1.35319 1.73962 0.89278 1.18680 1.20537 1.22716 1.00969 0.96964 0.84037 1.22636 1.00027 1.00282 0.95893 1.20221 0.90488 0.95668 0.86377 0.93385 1.42409 1.76526 1.11363 1.05765 1.19263 1.35650 0.94089 0.87694 0.91192 1.24728 1.02162 0.96031 0.98046 1.69670 1.50150 1.09478 1.28775 0.86152 0.77292 0.78877 0.84079 1.20593 1.21946 1.21928 0.92991 0.90647 0.93756 0.89188 0.91140 0.80192 0.91938 0.87086 0.94852 0.90744 0.91073 0.90891 0.90702 0.95142 0.86375 0.91515 0.90537 0.92432 0.78234 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.91 16 2 C -0.11 -1.89 2.46 -90.50 -0.22 -2.11 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.12 1.85 5.70 -3.71 -0.02 1.83 16 5 N -0.59 -9.28 2.97 -173.70 -0.52 -9.80 16 6 C 0.59 9.61 7.72 -12.11 -0.09 9.52 16 7 O -0.53 -9.62 16.39 5.37 0.09 -9.53 16 8 C -0.01 -0.21 6.95 -82.53 -0.57 -0.78 16 9 C -0.16 -1.76 10.93 -39.08 -0.43 -2.19 16 10 C -0.03 -0.29 6.03 -35.35 -0.21 -0.51 16 11 C 0.14 0.83 5.52 -4.97 -0.03 0.80 16 12 N -0.54 -3.81 5.01 -252.72 -1.27 -5.08 16 13 C 0.02 0.13 9.37 60.06 0.56 0.69 16 14 C 0.02 0.11 9.57 60.07 0.57 0.69 16 15 O 0.11 1.25 10.61 17.24 0.18 1.43 16 16 N -0.32 -4.31 8.51 33.29 0.28 -4.02 16 17 C 0.08 1.18 6.33 -3.71 -0.02 1.15 16 18 C -0.15 -2.68 5.66 -26.61 -0.15 -2.83 16 19 C 0.18 3.60 2.19 -67.89 -0.15 3.45 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -17.67 4.41 -53.39 -0.24 -17.90 16 22 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 26 Si 0.90 22.31 29.55 -169.99 -5.02 17.29 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.46 7.37 -51.93 -0.38 1.08 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.38 7.03 -51.93 -0.37 1.02 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.11 0.46 8.06 -51.93 -0.42 0.04 16 38 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.07 0.64 6.83 -51.93 -0.35 0.28 16 41 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 42 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 43 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.12 1.79 3.76 -74.16 -0.28 1.51 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.38 10.13 7.51 -40.82 -0.31 9.83 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -32.10 393.31 -8.50 -40.60 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.99 Total: 7.59 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.67 Total: 0.75 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -1.01 Total: -64.07 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.27 Total: -8.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.10 -8.50 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.731 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds