Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49577 * 2 1 4 4 C 1.53200 * 109.49396 * 239.93551 * 2 1 3 5 5 N 1.46923 * 108.77028 * 185.41318 * 4 2 1 6 6 C 1.34781 * 120.63067 * 233.62977 * 5 4 2 7 7 O 1.21494 * 119.99755 * 355.05321 * 6 5 4 8 8 C 1.48328 * 120.00243 * 175.05937 * 6 5 4 9 9 C 1.42269 * 126.93656 * 186.24784 * 8 6 5 10 10 C 1.35316 * 103.92053 * 179.88323 * 9 8 6 11 11 C 1.50706 * 126.66810 * 180.08187 * 10 9 8 12 12 N 1.46898 * 109.46973 * 90.32038 * 11 10 9 13 13 C 1.46897 * 111.00036 * 66.05157 * 12 11 10 14 14 C 1.46901 * 110.99747 * 190.00129 * 12 11 10 15 15 O 1.34017 * 106.66901 * 0.37280 * 10 9 8 16 16 N 1.20901 * 111.84085 * 359.74278 * 15 10 9 17 17 C 1.46924 * 118.74293 * 53.60798 * 5 4 2 18 18 C 1.53192 * 108.77581 * 306.39075 * 17 5 4 19 19 C 1.53035 * 109.49621 * 120.06619 * 2 1 3 20 20 H 1.09000 * 109.43695 * 61.28149 * 19 2 1 21 21 N 1.46500 * 109.48731 * 301.31559 * 19 2 1 22 22 C 1.36941 * 120.00087 * 154.91572 * 21 19 2 23 23 H 1.08000 * 119.99400 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99916 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00077 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99676 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47316 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47147 * 120.00520 * 26 24 22 29 29 H 1.48502 * 109.47029 * 239.99945 * 26 24 22 30 30 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46785 * 300.06218 * 1 2 3 32 32 H 1.09000 * 109.47308 * 60.06766 * 1 2 3 33 33 H 1.08995 * 109.58745 * 65.62529 * 4 2 1 34 34 H 1.09000 * 109.70209 * 305.26525 * 4 2 1 35 35 H 1.07997 * 128.04088 * 0.02562 * 9 8 6 36 36 H 1.08994 * 109.46996 * 210.32674 * 11 10 9 37 37 H 1.09005 * 109.46714 * 330.32230 * 11 10 9 38 38 H 1.08999 * 109.47106 * 59.99437 * 13 12 11 39 39 H 1.08997 * 109.47042 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46923 * 299.99658 * 13 12 11 41 41 H 1.09003 * 109.47407 * 60.00291 * 14 12 11 42 42 H 1.09002 * 109.47103 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47349 * 300.00213 * 14 12 11 44 44 H 1.09002 * 109.58956 * 186.59679 * 17 5 4 45 45 H 1.09004 * 109.58518 * 66.17970 * 17 5 4 46 46 H 1.09002 * 109.49401 * 174.58307 * 18 17 5 47 47 H 1.08991 * 109.49826 * 294.64901 * 18 17 5 48 48 H 0.96993 * 120.00190 * 334.92485 * 21 19 2 49 49 H 0.97001 * 119.99898 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2499 5 7 3.5045 -0.8288 -1.1699 6 6 4.2811 -0.3850 -2.1781 7 8 3.7717 0.0249 -3.2021 8 6 5.7577 -0.3971 -2.0376 9 6 6.7075 0.1453 -2.9474 10 6 7.9013 -0.1181 -2.3672 11 6 9.2623 0.2414 -2.9053 12 7 9.6512 1.5674 -2.4071 13 6 9.8455 1.5466 -0.9512 14 6 10.8561 2.0545 -3.0921 15 8 7.6384 -0.7664 -1.2241 16 7 6.4506 -0.9142 -1.0537 17 6 4.1053 -1.4267 0.0303 18 6 3.5709 -0.6953 1.2657 19 6 2.0408 -0.7227 1.2485 20 1 1.6963 -1.7568 1.2354 21 7 1.5272 -0.0525 2.4457 22 6 1.3958 -0.7491 3.6173 23 1 1.6711 -1.7926 3.6587 24 6 0.9087 -0.1142 4.7514 25 7 0.5727 1.1574 4.7006 26 14 0.7301 -1.0644 6.3497 27 1 1.1722 -2.4670 6.1438 28 1 1.5675 -0.4298 7.3991 29 1 -0.6921 -1.0518 6.7768 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5128 -0.8906 33 1 1.7637 -0.1574 -2.1390 34 1 1.6054 -1.7212 -1.3010 35 1 6.5194 0.6518 -3.8825 36 1 9.9908 -0.4990 -2.5749 37 1 9.2295 0.2578 -3.9947 38 1 10.6314 0.8344 -0.6997 39 1 10.1324 2.5408 -0.6087 40 1 8.9164 1.2493 -0.4649 41 1 10.6617 2.1265 -4.1622 42 1 11.1217 3.0381 -2.7045 43 1 11.6785 1.3607 -2.9180 44 1 5.1896 -1.3247 -0.0143 45 1 3.8376 -2.4819 0.0859 46 1 3.9335 -1.1903 2.1666 47 1 3.9164 0.3383 1.2544 48 1 1.2802 0.8848 2.4084 49 1 0.2320 1.6010 5.4931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = 40.838601 kcal Electronic energy + Delta-G solvation = -29715.087264 eV Core-core repulsion = 25680.811608 eV Total energy + Delta-G solvation = -4034.275656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.22465 -41.36995 -39.14218 -38.49613 -36.34482 -35.30320 -34.42133 -33.42512 -33.04819 -31.12125 -28.57184 -28.40971 -28.12702 -26.96223 -25.41776 -24.42824 -23.73897 -23.15653 -22.81039 -21.26086 -20.26423 -19.09262 -18.99276 -18.56893 -18.06873 -17.14855 -16.80680 -16.41429 -16.23126 -16.14426 -15.98405 -15.69407 -15.49160 -15.18572 -14.95133 -14.76136 -14.41495 -14.07308 -13.87492 -13.78012 -13.59437 -13.19857 -13.06840 -12.99409 -12.90519 -12.83676 -12.63943 -12.54472 -12.53340 -12.35866 -12.10315 -11.93459 -11.86402 -11.65851 -11.58945 -11.38037 -11.21608 -10.85152 -10.64694 -9.85660 -9.37932 -8.99492 -7.93285 -5.21339 -0.05157 0.58741 1.47054 1.47074 1.57038 1.58068 1.90302 1.97127 2.55872 2.72549 3.07416 3.28676 3.39993 3.65413 3.72772 3.82975 3.89177 3.97457 4.07702 4.10781 4.27639 4.29097 4.32167 4.39095 4.43714 4.57137 4.58281 4.66094 4.70552 4.74274 4.75107 4.78248 4.84056 4.87588 4.96653 4.99682 5.03957 5.12333 5.14352 5.23686 5.36066 5.43087 5.52660 5.56462 5.90386 5.99643 6.10693 6.28153 6.71814 7.01911 7.34563 8.09238 8.33512 9.30462 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.002684 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.626368 B =10430.015409 C =11723.331075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.126 3.874 5 N -0.591 5.591 6 C 0.592 3.408 7 O -0.556 6.556 8 C -0.040 4.040 9 C -0.167 4.167 10 C -0.011 4.011 11 C 0.136 3.864 12 N -0.562 5.562 13 C 0.019 3.981 14 C 0.025 3.975 15 O 0.118 5.882 16 N -0.338 5.338 17 C 0.086 3.914 18 C -0.136 4.136 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.730 5.730 22 C -0.230 4.230 23 H 0.077 0.923 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.295 1.295 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.194 0.806 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.038 0.962 48 H 0.371 0.629 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.128 -3.457 -19.593 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.004 3.996 5 N -0.322 5.322 6 C 0.379 3.621 7 O -0.434 6.434 8 C -0.197 4.197 9 C -0.190 4.190 10 C -0.075 4.075 11 C 0.008 3.992 12 N -0.288 5.288 13 C -0.129 4.129 14 C -0.122 4.122 15 O 0.045 5.955 16 N -0.041 5.041 17 C -0.037 4.037 18 C -0.177 4.177 19 C 0.071 3.929 20 H 0.068 0.932 21 N -0.369 5.369 22 C -0.362 4.362 23 H 0.095 0.905 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.223 1.223 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.211 0.789 36 H 0.099 0.901 37 H 0.155 0.845 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.144 0.856 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.057 0.943 48 H 0.203 0.797 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 20.079 -3.727 -18.997 27.891 hybrid contribution -0.024 0.158 1.061 1.073 sum 20.055 -3.569 -17.935 27.140 Atomic orbital electron populations 1.21569 0.93294 1.02266 1.01485 1.21613 0.97138 0.98989 0.94269 0.92902 1.21773 0.77555 1.02007 0.98273 1.48102 1.07503 1.58596 1.18018 1.17245 0.84115 0.77507 0.83221 1.90740 1.74218 1.49195 1.29208 1.23456 0.96175 1.05014 0.95063 1.22581 0.89041 1.04194 1.03200 1.24738 0.99306 0.97122 0.86310 1.20811 0.86328 0.90674 1.01407 1.61958 1.36829 1.24274 1.05707 1.22456 1.00625 1.02512 0.87334 1.22449 0.89076 1.00551 1.00075 1.84780 1.19025 1.55635 1.36062 1.73849 0.90049 1.19338 1.20815 1.22639 1.01426 0.97157 0.82435 1.22425 0.98745 0.99465 0.97071 1.20426 0.91224 0.95509 0.85761 0.93182 1.42574 1.76824 1.10833 1.06690 1.19621 1.33735 0.94365 0.88499 0.90549 1.25506 1.03117 0.96958 1.01317 1.69828 1.52013 1.11099 1.29242 0.85133 0.76678 0.78302 0.80037 1.18929 1.22414 1.22281 0.92077 0.93923 0.91303 0.88868 0.89189 0.78888 0.90074 0.84519 0.93711 0.90545 0.93340 0.89719 0.90778 0.94012 0.85584 0.89924 0.91658 0.94307 0.79735 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.02 71.98 0.65 -3.55 16 2 C -0.10 -3.42 2.46 -10.71 -0.03 -3.45 16 3 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.13 3.71 5.70 86.37 0.49 4.20 16 5 N -0.59 -18.18 2.97 -821.75 -2.44 -20.62 16 6 C 0.59 18.80 7.72 86.93 0.67 19.47 16 7 O -0.56 -19.71 16.39 -3.70 -0.06 -19.77 16 8 C -0.04 -1.09 6.95 42.96 0.30 -0.79 16 9 C -0.17 -3.47 10.93 22.60 0.25 -3.22 16 10 C -0.01 -0.18 6.03 25.01 0.15 -0.03 16 11 C 0.14 1.24 5.52 85.56 0.47 1.72 16 12 N -0.56 -6.54 5.01 -953.47 -4.78 -11.31 16 13 C 0.02 0.24 9.37 127.69 1.20 1.44 16 14 C 0.03 0.16 9.57 127.69 1.22 1.39 16 15 O 0.12 2.50 10.61 71.87 0.76 3.26 16 16 N -0.34 -8.78 8.51 -49.52 -0.42 -9.20 16 17 C 0.09 2.59 6.33 86.36 0.55 3.14 16 18 C -0.14 -4.98 5.66 30.67 0.17 -4.81 16 19 C 0.18 7.08 2.19 45.02 0.10 7.18 16 20 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 21 N -0.73 -36.57 4.41 -322.81 -1.42 -38.00 16 22 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 25 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 26 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 27 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.68 7.37 -2.39 -0.02 1.66 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.74 7.03 -2.39 -0.02 2.73 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 37 H 0.14 0.60 8.06 -2.38 -0.02 0.58 16 38 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.05 0.84 6.83 -2.39 -0.02 0.82 16 41 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 42 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 43 H 0.04 0.18 8.14 -2.39 -0.02 0.17 16 44 H 0.13 3.72 3.76 -46.29 -0.17 3.54 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.37 20.33 7.51 -92.71 -0.70 19.64 16 49 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -70.13 393.31 1.53 -68.60 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.09 Total: 31.28 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 7.49 Total: 6.93 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -8.78 Total: -138.65 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.70 Total: -16.51 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -70.13 1.53 -68.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.436 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds