Wall clock time and date at job start Tue Mar 31 2020 19:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.52874 * 2 1 4 4 C 1.53200 * 109.49642 * 120.08375 * 2 1 3 5 5 N 1.46924 * 108.77363 * 174.58458 * 4 2 1 6 6 C 1.34780 * 120.63314 * 126.36849 * 5 4 2 7 7 O 1.21496 * 119.99339 * 4.73077 * 6 5 4 8 8 C 1.48324 * 119.99977 * 184.73301 * 6 5 4 9 9 C 1.42275 * 126.93536 * 173.72597 * 8 6 5 10 10 C 1.35315 * 103.92229 * 180.02562 * 9 8 6 11 11 C 1.50696 * 126.66671 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.47420 * 89.99636 * 11 10 9 13 13 C 1.46900 * 111.00296 * 169.99645 * 12 11 10 14 14 C 1.46899 * 110.99831 * 293.95545 * 12 11 10 15 15 O 1.34018 * 106.67072 * 0.25762 * 10 9 8 16 16 N 1.20916 * 111.84139 * 359.52999 * 15 10 9 17 17 C 1.46927 * 118.73983 * 306.63694 * 5 4 2 18 18 C 1.52769 * 109.00616 * 53.31326 * 17 5 4 19 19 C 1.53042 * 109.38170 * 305.58795 * 18 17 5 20 20 H 1.08999 * 109.45695 * 181.25788 * 19 18 17 21 21 N 1.46499 * 109.46280 * 301.22029 * 19 18 17 22 22 C 1.36935 * 119.99845 * 275.07079 * 21 19 18 23 23 H 1.07997 * 120.00216 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00236 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99516 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00444 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47035 * 59.99776 * 26 24 22 28 28 H 1.48497 * 109.47294 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47257 * 300.00175 * 26 24 22 30 30 H 1.09004 * 109.46591 * 299.92348 * 1 2 3 31 31 H 1.09004 * 109.47180 * 59.91832 * 1 2 3 32 32 H 1.09001 * 109.47717 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.58477 * 54.79395 * 4 2 1 34 34 H 1.08999 * 109.70062 * 294.43278 * 4 2 1 35 35 H 1.08000 * 128.04231 * 359.97438 * 9 8 6 36 36 H 1.09002 * 109.47361 * 209.99578 * 11 10 9 37 37 H 1.08994 * 109.47564 * 329.99699 * 11 10 9 38 38 H 1.08998 * 109.46452 * 60.00316 * 13 12 11 39 39 H 1.08996 * 109.46868 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47120 * 300.00672 * 13 12 11 41 41 H 1.09002 * 109.46743 * 60.00065 * 14 12 11 42 42 H 1.09002 * 109.47086 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.47144 * 299.99786 * 14 12 11 44 44 H 1.09000 * 109.59218 * 173.14782 * 17 5 4 45 45 H 1.08998 * 109.58742 * 293.57857 * 17 5 4 46 46 H 1.09002 * 109.56422 * 185.55288 * 18 17 5 47 47 H 1.08999 * 109.38377 * 65.51523 * 18 17 5 48 48 H 0.96994 * 120.00243 * 95.06343 * 21 19 18 49 49 H 0.97000 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1696 6 6 4.2812 -0.3858 2.1779 7 8 3.7716 0.0275 3.2005 8 6 5.7578 -0.4022 2.0391 9 6 6.7081 0.1397 2.9487 10 6 7.9019 -0.1301 2.3715 11 6 9.2633 0.2240 2.9119 12 7 9.7554 -0.8725 3.7566 13 6 11.1677 -0.6733 4.1082 14 6 8.9286 -1.0204 4.9618 15 8 7.6381 -0.7689 1.2233 16 7 6.4502 -0.9181 1.0541 17 6 4.1054 -1.4218 -0.0332 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7232 -1.2483 20 1 1.6581 -0.2245 -2.1389 21 7 1.5781 -2.1131 -1.2307 22 6 1.4479 -2.8063 -2.4045 23 1 1.6858 -2.3282 -3.3432 24 6 1.0101 -4.1234 -2.3879 25 7 0.7206 -4.7062 -1.2438 26 14 0.8318 -5.0688 -3.9891 27 1 2.1482 -5.1369 -4.6730 28 1 0.3524 -6.4444 -3.7010 29 1 -0.1464 -4.3767 -4.8663 30 1 -0.3633 0.5127 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7216 1.2980 34 1 1.7638 -0.1601 2.1402 35 1 6.5204 0.6488 3.8825 36 1 9.9534 0.3820 2.0831 37 1 9.1930 1.1359 3.5049 38 1 11.2775 0.2641 4.6534 39 1 11.5065 -1.4994 4.7333 40 1 11.7670 -0.6369 3.1984 41 1 7.9001 -1.2365 4.6725 42 1 9.3145 -1.8392 5.5690 43 1 8.9574 -0.0955 5.5379 44 1 5.1894 -1.3163 0.0099 45 1 3.8410 -2.4776 -0.0915 46 1 3.9333 -1.1899 -2.1671 47 1 3.9159 0.3387 -1.2547 48 1 1.3642 -2.5424 -0.3877 49 1 0.4150 -5.6268 -1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036094927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:51 Heat of formation + Delta-G solvation = 65.638772 kcal Electronic energy + Delta-G solvation = -30079.171594 eV Core-core repulsion = 26045.971354 eV Total energy + Delta-G solvation = -4033.200240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.16848 -39.97297 -38.02891 -37.72062 -34.52664 -33.95716 -32.95510 -32.30523 -31.38700 -29.16534 -28.07982 -27.77886 -26.78946 -25.35425 -23.80420 -23.42782 -22.99944 -22.10737 -21.63096 -19.55258 -18.33918 -17.91010 -17.52368 -17.19610 -16.82031 -15.84691 -15.74114 -15.64459 -15.16728 -15.06038 -14.49021 -14.32143 -13.98590 -13.95021 -13.54931 -13.42923 -13.28047 -12.97335 -12.85381 -12.53172 -12.46780 -12.32278 -12.12364 -12.03280 -11.73066 -11.47470 -11.27325 -11.04099 -10.84827 -10.75541 -10.51772 -10.46337 -10.24981 -10.20087 -9.85342 -9.82983 -9.74840 -9.52893 -8.90160 -8.87209 -8.27510 -6.95258 -5.76512 -3.04904 1.05056 1.51272 2.69274 3.04240 3.25244 3.44092 3.49094 3.49665 3.55176 3.92317 4.26028 4.58797 4.59681 4.68651 4.79608 4.86456 4.93184 5.00355 5.13261 5.17888 5.27637 5.30536 5.34234 5.41112 5.43460 5.58858 5.63058 5.66286 5.67158 5.82749 5.91917 5.95637 6.05501 6.14454 6.27907 6.39457 6.41278 6.45975 6.48018 6.52546 6.63887 6.74463 6.79033 6.95774 7.01487 7.58188 7.70429 7.95944 8.23946 8.41955 9.53353 10.09956 10.45166 11.45948 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.002792 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.745380 B =10024.838925 C =11011.732991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.590 3.410 7 O -0.540 6.540 8 C -0.014 4.014 9 C -0.177 4.177 10 C -0.025 4.025 11 C 0.133 3.867 12 N -0.545 5.545 13 C 0.026 3.974 14 C 0.015 3.985 15 O 0.122 5.878 16 N -0.317 5.317 17 C 0.084 3.916 18 C -0.146 4.146 19 C 0.177 3.823 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.996 12.653 10.766 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.376 3.624 7 O -0.417 6.417 8 C -0.172 4.172 9 C -0.200 4.200 10 C -0.089 4.089 11 C 0.005 3.995 12 N -0.269 5.269 13 C -0.122 4.122 14 C -0.133 4.133 15 O 0.050 5.950 16 N -0.020 5.020 17 C -0.039 4.039 18 C -0.187 4.187 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.360 5.360 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.194 0.806 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.271 11.703 9.744 23.026 hybrid contribution -0.158 0.256 0.429 0.524 sum 17.113 11.960 10.174 23.225 Atomic orbital electron populations 1.21664 0.94023 1.03282 1.00479 1.21709 0.96618 0.98798 0.95672 0.91622 1.21755 0.77745 1.01996 0.98799 1.48035 1.07254 1.57906 1.17965 1.16981 0.83127 0.78573 0.83746 1.90749 1.73488 1.48883 1.28544 1.23539 0.97006 1.02964 0.93696 1.22381 0.89561 1.05583 1.02503 1.24122 0.97645 0.98881 0.88205 1.20501 0.88888 0.92581 0.97531 1.61895 1.03379 1.42788 1.18868 1.22405 0.87689 1.00591 1.01526 1.22547 0.98916 1.00864 0.90960 1.84851 1.19941 1.55428 1.34750 1.74073 0.89266 1.17587 1.21084 1.22487 0.99727 0.98740 0.82897 1.22418 1.00160 0.98512 0.97643 1.20242 0.90930 0.87395 0.94747 0.93076 1.42454 1.78948 1.07695 1.06936 1.19171 1.37218 0.93905 0.86539 0.91304 1.24708 1.02310 0.97165 0.96620 1.69641 1.51704 1.13079 1.23708 0.86301 0.77748 0.79193 0.83119 1.21345 1.21815 1.21383 0.93734 0.92706 0.90952 0.90209 0.89639 0.80551 0.87891 0.90889 0.95222 0.90764 0.90819 0.90764 0.90824 0.95050 0.86946 0.89734 0.90642 0.93643 0.78140 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 37.16 0.34 -1.90 16 2 C -0.11 -1.84 2.67 -90.50 -0.24 -2.08 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.11 5.41 -3.71 -0.02 2.09 16 5 N -0.58 -10.42 2.98 -173.96 -0.52 -10.94 16 6 C 0.59 10.45 7.72 -12.11 -0.09 10.36 16 7 O -0.54 -10.44 16.39 5.37 0.09 -10.35 16 8 C -0.01 -0.21 6.95 -82.53 -0.57 -0.78 16 9 C -0.18 -2.06 9.58 -39.07 -0.37 -2.44 16 10 C -0.02 -0.25 6.34 -35.35 -0.22 -0.47 16 11 C 0.13 0.89 5.53 -4.97 -0.03 0.86 16 12 N -0.54 -4.02 5.01 -252.72 -1.27 -5.28 16 13 C 0.03 0.13 9.57 60.06 0.57 0.70 16 14 C 0.02 0.11 9.29 60.06 0.56 0.67 16 15 O 0.12 1.54 11.18 17.24 0.19 1.74 16 16 N -0.32 -4.75 8.50 33.29 0.28 -4.46 16 17 C 0.08 1.53 6.05 -3.93 -0.02 1.51 16 18 C -0.15 -2.64 5.76 -26.83 -0.15 -2.80 16 19 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 20 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.72 -17.03 3.65 -53.38 -0.19 -17.22 16 22 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 26 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 33 H 0.08 1.56 6.64 -51.93 -0.34 1.21 16 34 H 0.09 1.48 7.03 -51.93 -0.37 1.11 16 35 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 37 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 40 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 42 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.11 1.96 3.76 -74.22 -0.28 1.68 16 45 H 0.08 1.80 7.74 -51.93 -0.40 1.40 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.38 9.74 5.92 -40.82 -0.24 9.50 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -31.41 388.29 -8.35 -39.76 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.81 Total: 8.55 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.68 Total: 2.08 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.97 Total: -64.81 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.28 Total: -8.61 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.41 -8.35 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.403 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds