Wall clock time and date at job start Tue Mar 31 2020 19:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.52874 * 2 1 4 4 C 1.53200 * 109.49642 * 120.08375 * 2 1 3 5 5 N 1.46924 * 108.77363 * 174.58458 * 4 2 1 6 6 C 1.34780 * 120.63314 * 126.36849 * 5 4 2 7 7 O 1.21496 * 119.99339 * 4.73077 * 6 5 4 8 8 C 1.48324 * 119.99977 * 184.73301 * 6 5 4 9 9 C 1.42275 * 126.93536 * 173.72597 * 8 6 5 10 10 C 1.35315 * 103.92229 * 180.02562 * 9 8 6 11 11 C 1.50696 * 126.66671 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.47420 * 89.99636 * 11 10 9 13 13 C 1.46900 * 111.00296 * 169.99645 * 12 11 10 14 14 C 1.46899 * 110.99831 * 293.95545 * 12 11 10 15 15 O 1.34018 * 106.67072 * 0.25762 * 10 9 8 16 16 N 1.20916 * 111.84139 * 359.52999 * 15 10 9 17 17 C 1.46927 * 118.73983 * 306.63694 * 5 4 2 18 18 C 1.52769 * 109.00616 * 53.31326 * 17 5 4 19 19 C 1.53042 * 109.38170 * 305.58795 * 18 17 5 20 20 H 1.08999 * 109.45695 * 181.25788 * 19 18 17 21 21 N 1.46499 * 109.46280 * 301.22029 * 19 18 17 22 22 C 1.36935 * 119.99845 * 275.07079 * 21 19 18 23 23 H 1.07997 * 120.00216 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00236 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99516 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00444 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47035 * 59.99776 * 26 24 22 28 28 H 1.48497 * 109.47294 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47257 * 300.00175 * 26 24 22 30 30 H 1.09004 * 109.46591 * 299.92348 * 1 2 3 31 31 H 1.09004 * 109.47180 * 59.91832 * 1 2 3 32 32 H 1.09001 * 109.47717 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.58477 * 54.79395 * 4 2 1 34 34 H 1.08999 * 109.70062 * 294.43278 * 4 2 1 35 35 H 1.08000 * 128.04231 * 359.97438 * 9 8 6 36 36 H 1.09002 * 109.47361 * 209.99578 * 11 10 9 37 37 H 1.08994 * 109.47564 * 329.99699 * 11 10 9 38 38 H 1.08998 * 109.46452 * 60.00316 * 13 12 11 39 39 H 1.08996 * 109.46868 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47120 * 300.00672 * 13 12 11 41 41 H 1.09002 * 109.46743 * 60.00065 * 14 12 11 42 42 H 1.09002 * 109.47086 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.47144 * 299.99786 * 14 12 11 44 44 H 1.09000 * 109.59218 * 173.14782 * 17 5 4 45 45 H 1.08998 * 109.58742 * 293.57857 * 17 5 4 46 46 H 1.09002 * 109.56422 * 185.55288 * 18 17 5 47 47 H 1.08999 * 109.38377 * 65.51523 * 18 17 5 48 48 H 0.96994 * 120.00243 * 95.06343 * 21 19 18 49 49 H 0.97000 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1696 6 6 4.2812 -0.3858 2.1779 7 8 3.7716 0.0275 3.2005 8 6 5.7578 -0.4022 2.0391 9 6 6.7081 0.1397 2.9487 10 6 7.9019 -0.1301 2.3715 11 6 9.2633 0.2240 2.9119 12 7 9.7554 -0.8725 3.7566 13 6 11.1677 -0.6733 4.1082 14 6 8.9286 -1.0204 4.9618 15 8 7.6381 -0.7689 1.2233 16 7 6.4502 -0.9181 1.0541 17 6 4.1054 -1.4218 -0.0332 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7232 -1.2483 20 1 1.6581 -0.2245 -2.1389 21 7 1.5781 -2.1131 -1.2307 22 6 1.4479 -2.8063 -2.4045 23 1 1.6858 -2.3282 -3.3432 24 6 1.0101 -4.1234 -2.3879 25 7 0.7206 -4.7062 -1.2438 26 14 0.8318 -5.0688 -3.9891 27 1 2.1482 -5.1369 -4.6730 28 1 0.3524 -6.4444 -3.7010 29 1 -0.1464 -4.3767 -4.8663 30 1 -0.3633 0.5127 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7216 1.2980 34 1 1.7638 -0.1601 2.1402 35 1 6.5204 0.6488 3.8825 36 1 9.9534 0.3820 2.0831 37 1 9.1930 1.1359 3.5049 38 1 11.2775 0.2641 4.6534 39 1 11.5065 -1.4994 4.7333 40 1 11.7670 -0.6369 3.1984 41 1 7.9001 -1.2365 4.6725 42 1 9.3145 -1.8392 5.5690 43 1 8.9574 -0.0955 5.5379 44 1 5.1894 -1.3163 0.0099 45 1 3.8410 -2.4776 -0.0915 46 1 3.9333 -1.1899 -2.1671 47 1 3.9159 0.3387 -1.2547 48 1 1.3642 -2.5424 -0.3877 49 1 0.4150 -5.6268 -1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:50 Heat of formation + Delta-G solvation = 45.128428 kcal Electronic energy + Delta-G solvation = -30080.060989 eV Core-core repulsion = 26045.971354 eV Total energy + Delta-G solvation = -4034.089635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.21899 -41.41812 -39.23692 -38.54510 -36.07621 -35.23154 -34.40802 -33.38951 -33.01739 -31.00589 -28.64987 -28.33475 -28.12468 -26.92698 -25.49598 -24.84623 -23.85024 -23.11610 -22.93487 -20.80369 -19.75677 -19.33574 -18.95231 -18.49512 -18.02600 -17.14014 -16.73198 -16.30695 -16.22412 -16.18527 -16.08433 -15.79641 -15.57217 -15.06863 -14.93490 -14.74816 -14.45561 -14.26267 -14.03871 -13.79600 -13.38911 -13.14097 -13.04232 -12.88271 -12.77839 -12.76035 -12.63686 -12.55857 -12.47681 -12.36959 -12.18316 -12.00452 -11.70515 -11.61838 -11.57844 -11.33352 -11.19133 -10.81820 -10.66028 -9.77857 -9.36060 -8.95387 -7.90393 -5.17154 -0.02737 0.55951 1.47891 1.49764 1.55514 1.61377 1.93379 1.96789 2.58277 2.74801 3.04682 3.32659 3.43062 3.67490 3.81055 3.84331 3.93341 4.03281 4.03605 4.07175 4.24361 4.32861 4.37613 4.44754 4.47739 4.52251 4.57949 4.59717 4.70295 4.75500 4.78154 4.82207 4.85796 4.97383 5.03304 5.05162 5.08326 5.13008 5.17633 5.19718 5.27772 5.43097 5.54860 5.58806 5.92682 6.01777 6.16766 6.31033 6.73177 7.05178 7.38266 8.13734 8.37747 9.32826 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.002792 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.745380 B =10024.838925 C =11011.732991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.122 3.878 5 N -0.585 5.585 6 C 0.590 3.410 7 O -0.559 6.559 8 C -0.039 4.039 9 C -0.177 4.177 10 C -0.004 4.004 11 C 0.133 3.867 12 N -0.565 5.565 13 C 0.026 3.974 14 C 0.016 3.984 15 O 0.127 5.873 16 N -0.340 5.340 17 C 0.093 3.907 18 C -0.138 4.138 19 C 0.171 3.829 20 H 0.052 0.948 21 N -0.724 5.724 22 C -0.229 4.229 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.279 1.279 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.194 0.806 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.373 0.627 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.196 14.891 10.807 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.106 0.894 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.377 3.623 7 O -0.438 6.438 8 C -0.196 4.196 9 C -0.200 4.200 10 C -0.068 4.068 11 C 0.005 3.995 12 N -0.291 5.291 13 C -0.121 4.121 14 C -0.132 4.132 15 O 0.053 5.947 16 N -0.042 5.042 17 C -0.029 4.029 18 C -0.178 4.178 19 C 0.063 3.937 20 H 0.070 0.930 21 N -0.365 5.365 22 C -0.361 4.361 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.207 1.207 28 H -0.228 1.228 29 H -0.206 1.206 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.211 0.789 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.144 0.856 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.206 0.794 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.482 13.988 9.763 25.895 hybrid contribution -0.707 -0.367 0.492 0.936 sum 18.775 13.621 10.255 25.362 Atomic orbital electron populations 1.21594 0.93434 1.01656 1.02103 1.21637 0.97022 0.99269 0.93795 0.89352 1.21666 0.77948 1.00769 0.99574 1.48055 1.07306 1.58145 1.18070 1.17287 0.84248 0.77752 0.83054 1.90722 1.74287 1.49755 1.29031 1.23400 0.95980 1.04874 0.95368 1.22585 0.89091 1.05659 1.02694 1.24765 0.98905 0.96559 0.86561 1.20767 0.87096 0.93186 0.98420 1.61862 1.04597 1.43482 1.19115 1.22443 0.86145 1.01301 1.02166 1.22514 0.97749 1.01753 0.91230 1.84804 1.18783 1.55261 1.35820 1.73925 0.90181 1.18366 1.21753 1.22323 1.00693 0.96567 0.83313 1.22292 0.98800 0.99758 0.96976 1.20465 0.91807 0.85371 0.96096 0.92979 1.42566 1.79021 1.09268 1.05637 1.19543 1.34924 0.93996 0.87646 0.90668 1.25435 1.03513 0.98401 0.99332 1.69807 1.53801 1.12877 1.25642 0.85311 0.77833 0.77367 0.79839 1.20684 1.22767 1.20563 0.91295 0.91897 0.94116 0.92798 0.88920 0.78874 0.85899 0.88328 0.93889 0.90744 0.89985 0.92846 0.90623 0.93562 0.85564 0.93531 0.91653 0.91158 0.79398 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.05 71.98 0.65 -3.51 16 2 C -0.10 -3.24 2.67 -10.71 -0.03 -3.27 16 3 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.12 4.40 5.41 86.37 0.47 4.87 16 5 N -0.59 -21.19 2.98 -822.58 -2.45 -23.64 16 6 C 0.59 20.83 7.72 86.93 0.67 21.50 16 7 O -0.56 -21.53 16.39 -3.70 -0.06 -21.59 16 8 C -0.04 -1.17 6.95 42.96 0.30 -0.88 16 9 C -0.18 -3.83 9.58 22.60 0.22 -3.61 16 10 C 0.00 -0.07 6.34 25.01 0.16 0.09 16 11 C 0.13 1.32 5.53 85.55 0.47 1.79 16 12 N -0.57 -6.83 5.01 -953.47 -4.78 -11.60 16 13 C 0.03 0.18 9.57 127.69 1.22 1.40 16 14 C 0.02 0.19 9.29 127.69 1.19 1.38 16 15 O 0.13 3.03 11.18 71.85 0.80 3.83 16 16 N -0.34 -9.97 8.50 -49.50 -0.42 -10.39 16 17 C 0.09 3.47 6.05 86.22 0.52 4.00 16 18 C -0.14 -4.90 5.76 30.53 0.18 -4.72 16 19 C 0.17 6.62 2.53 45.02 0.11 6.73 16 20 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 21 N -0.72 -35.13 3.65 -322.81 -1.18 -36.31 16 22 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 25 N -0.97 -59.43 13.06 21.65 0.28 -59.14 16 26 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.56 7.53 -2.39 -0.02 1.54 16 33 H 0.05 2.22 6.64 -2.39 -0.02 2.20 16 34 H 0.09 3.19 7.03 -2.39 -0.02 3.17 16 35 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.12 0.77 8.06 -2.39 -0.02 0.75 16 37 H 0.10 0.54 8.12 -2.39 -0.02 0.52 16 38 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 40 H 0.08 0.43 8.12 -2.39 -0.02 0.41 16 41 H 0.05 0.88 6.34 -2.39 -0.02 0.86 16 42 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 43 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.13 4.41 3.76 -46.40 -0.17 4.24 16 45 H 0.05 2.08 7.74 -2.39 -0.02 2.06 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.37 19.77 5.92 -92.71 -0.55 19.22 16 49 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.29 388.29 1.90 -67.39 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.24 Total: 32.59 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 7.43 Total: 10.45 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -8.54 Total: -141.08 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.74 Total: -17.76 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.29 1.90 -67.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.522 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds