Wall clock time and date at job start Tue Mar 31 2020 19:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.52512 * 2 1 4 4 C 1.53190 * 109.49693 * 239.91492 * 2 1 3 5 5 N 1.46921 * 108.77388 * 185.41776 * 4 2 1 6 6 C 1.34779 * 120.63077 * 233.58914 * 5 4 2 7 7 O 1.21503 * 119.99549 * 355.11365 * 6 5 4 8 8 C 1.48326 * 120.00205 * 175.11981 * 6 5 4 9 9 C 1.42274 * 126.93571 * 186.25554 * 8 6 5 10 10 C 1.35316 * 103.91956 * 179.88595 * 9 8 6 11 11 C 1.50704 * 126.66568 * 180.02562 * 10 9 8 12 12 N 1.46898 * 109.47147 * 90.31839 * 11 10 9 13 13 C 1.46900 * 110.99859 * 170.00122 * 12 11 10 14 14 C 1.46904 * 110.99827 * 293.95221 * 12 11 10 15 15 O 1.34014 * 106.66823 * 0.36747 * 10 9 8 16 16 N 1.20905 * 111.84602 * 359.74849 * 15 10 9 17 17 C 1.46925 * 118.74565 * 53.60524 * 5 4 2 18 18 C 1.53196 * 108.77353 * 306.39585 * 17 5 4 19 19 C 1.53042 * 109.31294 * 54.63321 * 18 17 5 20 20 H 1.09001 * 109.45765 * 178.62800 * 19 18 17 21 21 N 1.46496 * 109.46167 * 58.65236 * 19 18 17 22 22 C 1.36943 * 119.99826 * 85.00343 * 21 19 18 23 23 H 1.07997 * 119.99876 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00025 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99998 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99928 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47081 * 269.99866 * 26 24 22 28 28 H 1.48498 * 109.47332 * 30.00087 * 26 24 22 29 29 H 1.48507 * 109.47065 * 150.00111 * 26 24 22 30 30 H 1.09000 * 109.46942 * 299.92162 * 1 2 3 31 31 H 1.09002 * 109.46913 * 59.92379 * 1 2 3 32 32 H 1.08996 * 109.46760 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.58836 * 65.62821 * 4 2 1 34 34 H 1.09008 * 109.58554 * 305.20171 * 4 2 1 35 35 H 1.08000 * 128.04248 * 0.02562 * 9 8 6 36 36 H 1.08997 * 109.47354 * 210.32079 * 11 10 9 37 37 H 1.09003 * 109.47029 * 330.31853 * 11 10 9 38 38 H 1.08998 * 109.47360 * 60.00258 * 13 12 11 39 39 H 1.08999 * 109.46954 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47349 * 299.99765 * 13 12 11 41 41 H 1.09002 * 109.46905 * 60.00328 * 14 12 11 42 42 H 1.09003 * 109.46574 * 179.97438 * 14 12 11 43 43 H 1.08994 * 109.47332 * 299.99959 * 14 12 11 44 44 H 1.08993 * 109.59431 * 186.60982 * 17 5 4 45 45 H 1.09007 * 109.69983 * 66.24653 * 17 5 4 46 46 H 1.09002 * 109.49919 * 294.67722 * 18 17 5 47 47 H 1.09000 * 109.49848 * 174.58325 * 18 17 5 48 48 H 0.96999 * 120.00484 * 264.99854 * 21 19 18 49 49 H 0.96997 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2812 -0.3866 -2.1781 7 8 3.7717 0.0233 -3.2022 8 6 5.7578 -0.3999 -2.0382 9 6 6.7078 0.1414 -2.9485 10 6 7.9015 -0.1230 -2.3687 11 6 9.2627 0.2341 -2.9080 12 7 9.6537 1.5602 -2.4116 13 6 11.0624 1.8426 -2.7178 14 6 8.7768 2.6056 -2.9560 15 8 7.6384 -0.7707 -1.2253 16 7 6.4506 -0.9174 -1.0544 17 6 4.1053 -1.4267 0.0309 18 6 3.5709 -0.6949 1.2661 19 6 2.0408 -0.7231 1.2485 20 1 1.6582 -0.2242 2.1389 21 7 1.5784 -2.1130 1.2310 22 6 1.4468 -2.8056 2.4050 23 1 1.6835 -2.3270 3.3437 24 6 1.0081 -4.1225 2.3885 25 7 0.7181 -4.7052 1.2445 26 14 0.8293 -5.0675 3.9898 27 1 2.1065 -5.7578 4.3024 28 1 0.4952 -4.1239 5.0868 29 1 -0.2558 -6.0721 3.8532 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7639 -0.1581 -2.1388 34 1 1.6052 -1.7218 -1.2979 35 1 6.5198 0.6478 -3.8837 36 1 9.9904 -0.5068 -2.5772 37 1 9.2293 0.2492 -3.9974 38 1 11.2122 1.8153 -3.7971 39 1 11.3254 2.8305 -2.3397 40 1 11.6947 1.0917 -2.2441 41 1 7.7476 2.4094 -2.6554 42 1 9.0882 3.5771 -2.5720 43 1 8.8439 2.6060 -4.0438 44 1 5.1896 -1.3246 -0.0135 45 1 3.8397 -2.4824 0.0882 46 1 3.9159 0.3390 1.2542 47 1 3.9334 -1.1895 2.1672 48 1 1.3653 -2.5427 0.3879 49 1 0.4112 -5.6253 1.2331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036094930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:56 Heat of formation + Delta-G solvation = 65.508514 kcal Electronic energy + Delta-G solvation = -30109.981387 eV Core-core repulsion = 26076.775499 eV Total energy + Delta-G solvation = -4033.205888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.17176 -39.96709 -38.03952 -37.71387 -34.52558 -33.95907 -32.95622 -32.30631 -31.37042 -29.15425 -28.09527 -27.78536 -26.78963 -25.35376 -23.80554 -23.43266 -23.00681 -22.11072 -21.62821 -19.55625 -18.32606 -17.92878 -17.51722 -17.19708 -16.82359 -15.85324 -15.75442 -15.64997 -15.17440 -15.06205 -14.48688 -14.32397 -13.97942 -13.94668 -13.54460 -13.44663 -13.27229 -12.96608 -12.86812 -12.53514 -12.46799 -12.33282 -12.14093 -12.03865 -11.73148 -11.47349 -11.27140 -11.03791 -10.86859 -10.75640 -10.51850 -10.46272 -10.25362 -10.16955 -9.86919 -9.83116 -9.73279 -9.53051 -8.90966 -8.88646 -8.27425 -6.95330 -5.76952 -3.05225 1.05054 1.51293 2.69209 3.03722 3.25181 3.43372 3.49062 3.50246 3.54106 3.92237 4.25955 4.58560 4.59441 4.67430 4.79222 4.86241 4.92058 5.00623 5.11769 5.16448 5.27662 5.30333 5.34617 5.41319 5.42311 5.55587 5.63128 5.66219 5.67081 5.82717 5.91990 5.95533 6.05590 6.14620 6.27947 6.37952 6.41395 6.44625 6.48094 6.52504 6.64267 6.74649 6.79305 6.95846 7.01633 7.58113 7.70831 7.95952 8.23879 8.41565 9.53072 10.09731 10.44914 11.45607 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002767 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.036161 B =10118.452117 C =10993.228893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.590 3.410 7 O -0.540 6.540 8 C -0.014 4.014 9 C -0.177 4.177 10 C -0.024 4.024 11 C 0.133 3.867 12 N -0.545 5.545 13 C 0.025 3.975 14 C 0.015 3.985 15 O 0.122 5.878 16 N -0.317 5.317 17 C 0.084 3.916 18 C -0.146 4.146 19 C 0.177 3.823 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.075 0.925 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.950 13.889 -10.100 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.376 3.624 7 O -0.417 6.417 8 C -0.172 4.172 9 C -0.200 4.200 10 C -0.088 4.088 11 C 0.005 3.995 12 N -0.269 5.269 13 C -0.122 4.122 14 C -0.133 4.133 15 O 0.050 5.950 16 N -0.020 5.020 17 C -0.038 4.038 18 C -0.187 4.187 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.209 1.209 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.194 0.806 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.130 0.870 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.201 13.386 -8.831 23.517 hybrid contribution -0.124 -0.412 -0.803 0.911 sum 17.078 12.974 -9.634 23.511 Atomic orbital electron populations 1.21665 0.94027 1.03272 1.00487 1.21713 0.96609 0.98809 0.95676 0.91616 1.21755 0.77740 1.01974 0.98813 1.48032 1.07265 1.57818 1.18052 1.16986 0.83128 0.78579 0.83739 1.90751 1.73490 1.48998 1.28431 1.23538 0.97015 1.03113 0.93543 1.22381 0.89555 1.05262 1.02829 1.24120 0.97714 0.99018 0.87996 1.20510 0.89389 0.92267 0.97364 1.61903 1.03854 1.01335 1.59823 1.22405 0.87740 1.02880 0.99204 1.22542 0.98234 0.94993 0.97494 1.84847 1.19936 1.55280 1.34894 1.74067 0.89246 1.18120 1.20584 1.22568 0.99730 0.98619 0.82925 1.22490 1.00109 0.98506 0.97604 1.20243 0.90940 0.87372 0.94750 0.93071 1.42466 1.78959 1.07705 1.06926 1.19220 1.37032 0.93906 0.86552 0.91244 1.24704 1.02337 0.97185 0.96624 1.69647 1.51777 1.13039 1.23676 0.86227 0.77263 0.79817 0.83090 1.21823 1.20856 1.21904 0.92710 0.93724 0.90958 0.89643 0.90204 0.80552 0.87861 0.90853 0.95210 0.90783 0.90799 0.90829 0.90856 0.95038 0.86959 0.89726 0.93584 0.90678 0.78149 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 37.16 0.34 -1.90 16 2 C -0.11 -1.84 2.67 -90.49 -0.24 -2.08 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 2.11 5.41 -3.71 -0.02 2.09 16 5 N -0.58 -10.42 2.97 -173.70 -0.52 -10.93 16 6 C 0.59 10.44 7.72 -12.11 -0.09 10.35 16 7 O -0.54 -10.44 16.39 5.36 0.09 -10.35 16 8 C -0.01 -0.21 6.95 -82.53 -0.57 -0.78 16 9 C -0.18 -2.06 9.61 -39.07 -0.38 -2.44 16 10 C -0.02 -0.25 6.34 -35.35 -0.22 -0.47 16 11 C 0.13 0.88 5.52 -4.98 -0.03 0.85 16 12 N -0.54 -3.88 5.01 -252.72 -1.27 -5.15 16 13 C 0.03 0.12 9.57 60.06 0.57 0.70 16 14 C 0.02 0.10 9.29 60.07 0.56 0.66 16 15 O 0.12 1.55 11.18 17.25 0.19 1.74 16 16 N -0.32 -4.74 8.51 33.29 0.28 -4.46 16 17 C 0.08 1.53 6.07 -3.71 -0.02 1.51 16 18 C -0.15 -2.65 5.78 -26.61 -0.15 -2.81 16 19 C 0.18 3.46 2.53 -67.89 -0.17 3.29 16 20 H 0.05 1.02 8.08 -51.93 -0.42 0.61 16 21 N -0.72 -17.02 3.64 -53.38 -0.19 -17.22 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 26 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.37 7.54 -51.93 -0.39 0.97 16 33 H 0.09 1.47 7.03 -51.93 -0.37 1.11 16 34 H 0.08 1.56 6.64 -51.92 -0.34 1.21 16 35 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 39 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 40 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.07 0.61 6.35 -51.93 -0.33 0.28 16 42 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 44 H 0.11 1.96 3.76 -74.14 -0.28 1.68 16 45 H 0.08 1.79 7.74 -51.93 -0.40 1.39 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.38 9.73 5.93 -40.82 -0.24 9.48 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -31.39 388.36 -8.35 -39.74 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.81 Total: 8.40 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.68 Total: 2.08 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.97 Total: -64.63 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.28 Total: -8.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.39 -8.35 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.245 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds