Wall clock time and date at job start Tue Mar 31 2020 19:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.52512 * 2 1 4 4 C 1.53190 * 109.49693 * 239.91492 * 2 1 3 5 5 N 1.46921 * 108.77388 * 185.41776 * 4 2 1 6 6 C 1.34779 * 120.63077 * 233.58914 * 5 4 2 7 7 O 1.21503 * 119.99549 * 355.11365 * 6 5 4 8 8 C 1.48326 * 120.00205 * 175.11981 * 6 5 4 9 9 C 1.42274 * 126.93571 * 186.25554 * 8 6 5 10 10 C 1.35316 * 103.91956 * 179.88595 * 9 8 6 11 11 C 1.50704 * 126.66568 * 180.02562 * 10 9 8 12 12 N 1.46898 * 109.47147 * 90.31839 * 11 10 9 13 13 C 1.46900 * 110.99859 * 170.00122 * 12 11 10 14 14 C 1.46904 * 110.99827 * 293.95221 * 12 11 10 15 15 O 1.34014 * 106.66823 * 0.36747 * 10 9 8 16 16 N 1.20905 * 111.84602 * 359.74849 * 15 10 9 17 17 C 1.46925 * 118.74565 * 53.60524 * 5 4 2 18 18 C 1.53196 * 108.77353 * 306.39585 * 17 5 4 19 19 C 1.53042 * 109.31294 * 54.63321 * 18 17 5 20 20 H 1.09001 * 109.45765 * 178.62800 * 19 18 17 21 21 N 1.46496 * 109.46167 * 58.65236 * 19 18 17 22 22 C 1.36943 * 119.99826 * 85.00343 * 21 19 18 23 23 H 1.07997 * 119.99876 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00025 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99998 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99928 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47081 * 269.99866 * 26 24 22 28 28 H 1.48498 * 109.47332 * 30.00087 * 26 24 22 29 29 H 1.48507 * 109.47065 * 150.00111 * 26 24 22 30 30 H 1.09000 * 109.46942 * 299.92162 * 1 2 3 31 31 H 1.09002 * 109.46913 * 59.92379 * 1 2 3 32 32 H 1.08996 * 109.46760 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.58836 * 65.62821 * 4 2 1 34 34 H 1.09008 * 109.58554 * 305.20171 * 4 2 1 35 35 H 1.08000 * 128.04248 * 0.02562 * 9 8 6 36 36 H 1.08997 * 109.47354 * 210.32079 * 11 10 9 37 37 H 1.09003 * 109.47029 * 330.31853 * 11 10 9 38 38 H 1.08998 * 109.47360 * 60.00258 * 13 12 11 39 39 H 1.08999 * 109.46954 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47349 * 299.99765 * 13 12 11 41 41 H 1.09002 * 109.46905 * 60.00328 * 14 12 11 42 42 H 1.09003 * 109.46574 * 179.97438 * 14 12 11 43 43 H 1.08994 * 109.47332 * 299.99959 * 14 12 11 44 44 H 1.08993 * 109.59431 * 186.60982 * 17 5 4 45 45 H 1.09007 * 109.69983 * 66.24653 * 17 5 4 46 46 H 1.09002 * 109.49919 * 294.67722 * 18 17 5 47 47 H 1.09000 * 109.49848 * 174.58325 * 18 17 5 48 48 H 0.96999 * 120.00484 * 264.99854 * 21 19 18 49 49 H 0.96997 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2812 -0.3866 -2.1781 7 8 3.7717 0.0233 -3.2022 8 6 5.7578 -0.3999 -2.0382 9 6 6.7078 0.1414 -2.9485 10 6 7.9015 -0.1230 -2.3687 11 6 9.2627 0.2341 -2.9080 12 7 9.6537 1.5602 -2.4116 13 6 11.0624 1.8426 -2.7178 14 6 8.7768 2.6056 -2.9560 15 8 7.6384 -0.7707 -1.2253 16 7 6.4506 -0.9174 -1.0544 17 6 4.1053 -1.4267 0.0309 18 6 3.5709 -0.6949 1.2661 19 6 2.0408 -0.7231 1.2485 20 1 1.6582 -0.2242 2.1389 21 7 1.5784 -2.1130 1.2310 22 6 1.4468 -2.8056 2.4050 23 1 1.6835 -2.3270 3.3437 24 6 1.0081 -4.1225 2.3885 25 7 0.7181 -4.7052 1.2445 26 14 0.8293 -5.0675 3.9898 27 1 2.1065 -5.7578 4.3024 28 1 0.4952 -4.1239 5.0868 29 1 -0.2558 -6.0721 3.8532 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7639 -0.1581 -2.1388 34 1 1.6052 -1.7218 -1.2979 35 1 6.5198 0.6478 -3.8837 36 1 9.9904 -0.5068 -2.5772 37 1 9.2293 0.2492 -3.9974 38 1 11.2122 1.8153 -3.7971 39 1 11.3254 2.8305 -2.3397 40 1 11.6947 1.0917 -2.2441 41 1 7.7476 2.4094 -2.6554 42 1 9.0882 3.5771 -2.5720 43 1 8.8439 2.6060 -4.0438 44 1 5.1896 -1.3246 -0.0135 45 1 3.8397 -2.4824 0.0882 46 1 3.9159 0.3390 1.2542 47 1 3.9334 -1.1895 2.1672 48 1 1.3653 -2.5427 0.3879 49 1 0.4112 -5.6253 1.2331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:55 Heat of formation + Delta-G solvation = 45.088796 kcal Electronic energy + Delta-G solvation = -30110.866852 eV Core-core repulsion = 26076.775499 eV Total energy + Delta-G solvation = -4034.091354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.22225 -41.41280 -39.23229 -38.53943 -36.07620 -35.23267 -34.40926 -33.38904 -33.00485 -30.99487 -28.64265 -28.33095 -28.12506 -26.92627 -25.50191 -24.84821 -23.84723 -23.11758 -22.92900 -20.80782 -19.75398 -19.33972 -18.96215 -18.48418 -18.03031 -17.14099 -16.73249 -16.30467 -16.21940 -16.15654 -16.12093 -15.79052 -15.55999 -15.06958 -14.93122 -14.74844 -14.45550 -14.26037 -14.03847 -13.79170 -13.39194 -13.13686 -13.03984 -12.89484 -12.78867 -12.76499 -12.63381 -12.56063 -12.47088 -12.37320 -12.12808 -12.00702 -11.71081 -11.62191 -11.57869 -11.34216 -11.19298 -10.83114 -10.65575 -9.77781 -9.35991 -8.95564 -7.90722 -5.17418 -0.02739 0.56023 1.47903 1.48453 1.56491 1.61365 1.93861 1.95810 2.58009 2.74672 3.04779 3.32781 3.42932 3.67424 3.80928 3.84246 3.93172 4.02964 4.03534 4.07159 4.24915 4.31942 4.37600 4.45555 4.47693 4.52361 4.57841 4.60181 4.70250 4.76107 4.78853 4.81990 4.85783 4.97117 5.03040 5.06217 5.08140 5.13544 5.17437 5.19623 5.27622 5.42780 5.54839 5.58808 5.92752 6.02221 6.16655 6.30928 6.73109 7.05172 7.38170 8.13383 8.37553 9.32688 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002767 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.036161 B =10118.452117 C =10993.228893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.123 3.877 5 N -0.585 5.585 6 C 0.590 3.410 7 O -0.559 6.559 8 C -0.039 4.039 9 C -0.177 4.177 10 C -0.004 4.004 11 C 0.133 3.867 12 N -0.563 5.563 13 C 0.026 3.974 14 C 0.016 3.984 15 O 0.127 5.873 16 N -0.340 5.340 17 C 0.094 3.906 18 C -0.138 4.138 19 C 0.172 3.828 20 H 0.052 0.948 21 N -0.724 5.724 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.291 1.291 28 H -0.270 1.270 29 H -0.300 1.300 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.194 0.806 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.127 0.873 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.373 0.627 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.105 15.780 -10.335 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.106 0.894 4 C 0.001 3.999 5 N -0.316 5.316 6 C 0.377 3.623 7 O -0.438 6.438 8 C -0.196 4.196 9 C -0.200 4.200 10 C -0.068 4.068 11 C 0.005 3.995 12 N -0.288 5.288 13 C -0.121 4.121 14 C -0.132 4.132 15 O 0.053 5.947 16 N -0.042 5.042 17 C -0.029 4.029 18 C -0.178 4.178 19 C 0.063 3.937 20 H 0.070 0.930 21 N -0.365 5.365 22 C -0.360 4.360 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.219 1.219 28 H -0.195 1.195 29 H -0.227 1.227 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.211 0.789 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.144 0.856 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.206 0.794 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.366 15.326 -9.043 26.301 hybrid contribution -0.658 -0.896 -0.789 1.363 sum 18.708 14.430 -9.832 25.591 Atomic orbital electron populations 1.21595 0.93408 1.01677 1.02098 1.21640 0.97038 0.99239 0.93834 0.89448 1.21667 0.77940 1.00784 0.99548 1.48052 1.07319 1.58058 1.18152 1.17289 0.84245 0.77750 0.83054 1.90724 1.74287 1.49855 1.28926 1.23399 0.95990 1.05019 0.95202 1.22584 0.89077 1.05271 1.03111 1.24757 0.98953 0.96783 0.86278 1.20761 0.87581 0.92680 0.98493 1.61877 1.05062 1.01364 1.60521 1.22446 0.86283 1.03273 1.00100 1.22522 0.97192 0.95212 0.98320 1.84801 1.18786 1.55187 1.35891 1.73921 0.90152 1.18930 1.21219 1.22401 1.00669 0.96519 0.83290 1.22367 0.98808 0.99653 0.97011 1.20455 0.91772 0.85381 0.96076 0.93041 1.42572 1.79017 1.09245 1.05642 1.19576 1.34777 0.93993 0.87628 0.90691 1.25424 1.03522 0.98403 0.99321 1.69807 1.53818 1.12889 1.25590 0.85243 0.76624 0.78422 0.80096 1.21891 1.19517 1.22723 0.91939 0.91270 0.94070 0.88918 0.92705 0.78873 0.86047 0.88487 0.94022 0.90576 0.90072 0.92651 0.90454 0.93750 0.85608 0.93367 0.91297 0.91682 0.79366 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.05 71.98 0.65 -3.51 16 2 C -0.10 -3.26 2.67 -10.71 -0.03 -3.29 16 3 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 4 C 0.12 4.40 5.41 86.36 0.47 4.87 16 5 N -0.59 -21.17 2.97 -821.77 -2.44 -23.62 16 6 C 0.59 20.81 7.72 86.93 0.67 21.48 16 7 O -0.56 -21.50 16.39 -3.73 -0.06 -21.56 16 8 C -0.04 -1.17 6.95 42.96 0.30 -0.87 16 9 C -0.18 -3.83 9.61 22.60 0.22 -3.61 16 10 C 0.00 -0.06 6.34 25.01 0.16 0.10 16 11 C 0.13 1.33 5.52 85.56 0.47 1.80 16 12 N -0.56 -6.40 5.01 -953.47 -4.78 -11.18 16 13 C 0.03 0.17 9.57 127.69 1.22 1.39 16 14 C 0.02 0.17 9.29 127.69 1.19 1.36 16 15 O 0.13 3.03 11.18 71.90 0.80 3.83 16 16 N -0.34 -9.96 8.51 -49.52 -0.42 -10.38 16 17 C 0.09 3.48 6.07 86.36 0.52 4.01 16 18 C -0.14 -4.94 5.78 30.67 0.18 -4.76 16 19 C 0.17 6.66 2.53 45.02 0.11 6.78 16 20 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 21 N -0.72 -35.08 3.64 -322.81 -1.18 -36.26 16 22 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 25 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 26 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.57 7.54 -2.39 -0.02 1.56 16 33 H 0.09 3.19 7.03 -2.39 -0.02 3.17 16 34 H 0.05 2.24 6.64 -2.38 -0.02 2.23 16 35 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.12 0.81 8.06 -2.39 -0.02 0.80 16 37 H 0.10 0.58 8.12 -2.39 -0.02 0.56 16 38 H 0.04 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.08 0.46 8.12 -2.39 -0.02 0.44 16 40 H 0.08 0.41 8.12 -2.39 -0.02 0.39 16 41 H 0.05 0.82 6.35 -2.39 -0.02 0.80 16 42 H 0.08 0.77 8.12 -2.39 -0.02 0.76 16 43 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.13 4.41 3.76 -46.24 -0.17 4.23 16 45 H 0.05 2.14 7.74 -2.38 -0.02 2.12 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.37 19.72 5.93 -92.71 -0.55 19.17 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -68.91 388.36 1.91 -66.99 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.24 Total: 32.25 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 7.43 Total: 10.50 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -8.53 Total: -140.39 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.74 Total: -17.73 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -68.91 1.91 -66.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.083 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds