Wall clock time and date at job start Tue Mar 31 2020 19:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99989 * 2 1 4 4 C 1.53000 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47169 * 180.02562 * 4 3 2 6 6 C 1.35031 * 124.88206 * 125.00201 * 5 4 3 7 7 C 1.35364 * 107.22850 * 180.02562 * 6 5 4 8 8 C 1.41502 * 105.50050 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51651 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99993 * 352.88067 * 9 8 7 11 11 N 1.34782 * 120.00018 * 172.87823 * 9 8 7 12 12 C 1.46927 * 120.62841 * 173.01395 * 11 9 8 13 13 C 1.53195 * 108.77434 * 126.39421 * 12 11 9 14 14 C 1.53048 * 109.31170 * 54.63363 * 13 12 11 15 15 H 1.08995 * 109.45985 * 178.61184 * 14 13 12 16 16 N 1.46496 * 109.46107 * 58.65512 * 14 13 12 17 17 C 1.36934 * 119.99940 * 84.99776 * 16 14 13 18 18 H 1.07992 * 120.00239 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99947 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99769 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47375 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47388 * 120.00295 * 21 19 17 24 24 H 1.48507 * 109.46954 * 239.99872 * 21 19 17 25 25 C 1.53039 * 109.53610 * 298.63435 * 14 13 12 26 26 H 1.08993 * 109.49935 * 301.41423 * 25 14 13 27 27 C 1.52998 * 109.49685 * 181.34985 * 25 14 13 28 28 C 1.46923 * 120.63045 * 353.01802 * 11 9 8 29 29 N 1.28466 * 124.88380 * 305.32840 * 5 4 3 30 30 H 1.08993 * 109.47363 * 59.99572 * 1 2 3 31 31 H 1.09006 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46713 * 299.99408 * 1 2 3 33 33 H 1.09002 * 109.46884 * 60.00658 * 3 2 1 34 34 H 1.08995 * 109.47233 * 300.00244 * 3 2 1 35 35 H 1.09006 * 109.46997 * 60.00163 * 4 3 2 36 36 H 1.09002 * 109.47523 * 300.00510 * 4 3 2 37 37 H 1.08001 * 126.38700 * 0.02562 * 6 5 4 38 38 H 1.08001 * 127.25381 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.58978 * 6.60333 * 12 11 9 40 40 H 1.09003 * 109.58750 * 246.17832 * 12 11 9 41 41 H 1.08998 * 109.49883 * 294.68556 * 13 12 11 42 42 H 1.08996 * 109.49579 * 174.58193 * 13 12 11 43 43 H 0.97009 * 120.00007 * 265.00040 * 16 14 13 44 44 H 0.97003 * 119.99177 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.47444 * 59.99966 * 27 25 14 46 46 H 1.08997 * 109.47398 * 180.02562 * 27 25 14 47 47 H 1.09002 * 109.47512 * 300.00016 * 27 25 14 48 48 H 1.08996 * 109.58774 * 113.81415 * 28 11 9 49 49 H 1.08999 * 109.58604 * 353.39014 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3347 4.2442 0.5737 8 6 4.5719 4.5262 -0.5843 9 6 4.5566 5.7957 -1.3392 10 8 5.1454 6.7673 -0.9064 11 7 3.8900 5.8770 -2.5077 12 6 3.7362 7.1672 -3.1937 13 6 4.2381 7.0227 -4.6339 14 6 3.5077 5.8602 -5.3102 15 1 3.8451 5.7709 -6.3428 16 7 2.0646 6.1118 -5.2887 17 6 1.4877 6.8732 -6.2698 18 1 2.0964 7.2878 -7.0597 19 6 0.1202 7.1111 -6.2497 20 7 -0.6217 6.6054 -5.2873 21 14 -0.6669 8.1491 -7.5885 22 1 0.3765 8.5967 -8.5457 23 1 -1.6848 7.3413 -8.3072 24 1 -1.3182 9.3352 -6.9766 25 6 3.8099 4.5606 -4.5608 26 1 4.8856 4.3856 -4.5551 27 6 3.1064 3.3940 -5.2573 28 6 3.3031 4.6771 -3.1197 29 7 3.8738 3.4423 -0.8584 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4203 2.4140 1.7468 38 1 6.0194 4.9065 1.0826 39 1 4.3218 7.9277 -2.6772 40 1 2.6848 7.4545 -3.2003 41 1 5.3099 6.8245 -4.6275 42 1 4.0412 7.9441 -5.1819 43 1 1.5178 5.7391 -4.5794 44 1 -1.5772 6.7720 -5.2732 45 1 3.4656 3.3134 -6.2832 46 1 3.3215 2.4687 -4.7230 47 1 2.0305 3.5688 -5.2618 48 1 2.2164 4.7614 -3.1202 49 1 3.6030 3.7947 -2.5545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036102632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:28 Heat of formation + Delta-G solvation = 27.906854 kcal Electronic energy + Delta-G solvation = -30430.027766 eV Core-core repulsion = 26395.191347 eV Total energy + Delta-G solvation = -4034.836418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.80990 -39.66716 -38.31830 -37.54102 -34.29815 -34.02917 -32.55598 -31.75203 -30.73011 -29.78419 -29.01785 -26.73998 -26.10358 -25.31999 -24.07109 -23.32246 -22.27663 -21.39561 -21.20700 -19.54359 -18.40245 -17.54735 -17.26385 -16.85740 -16.59243 -16.34924 -15.88843 -15.49160 -15.10229 -14.77412 -14.41501 -14.22891 -13.99067 -13.87257 -13.69637 -13.49989 -13.13127 -13.07892 -12.75942 -12.55353 -12.33713 -12.03734 -12.00554 -11.79407 -11.68651 -11.30601 -11.07758 -10.89744 -10.82977 -10.56050 -10.42604 -10.21135 -10.11089 -10.08149 -9.87369 -9.66538 -9.48162 -9.20960 -9.16065 -8.87956 -8.08376 -6.92188 -5.75669 -3.03017 1.56188 2.03511 2.12484 3.32312 3.43762 3.50202 3.50895 3.51768 3.60419 4.15587 4.46530 4.57971 4.61193 4.64425 4.78252 4.98740 5.01288 5.10810 5.24355 5.29767 5.36298 5.39242 5.43655 5.48523 5.56686 5.65357 5.70783 5.75419 5.91606 5.93232 5.98685 6.10624 6.20348 6.30944 6.37151 6.46821 6.52316 6.58869 6.62361 6.68397 6.76791 6.80138 6.87655 7.02689 7.14710 7.72752 7.73308 7.90369 8.43356 8.48854 9.55028 10.12769 10.48104 11.47120 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.003632 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.227741 B = 7707.155982 C = 9430.625149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.288 5.288 6 C -0.015 4.015 7 C -0.180 4.180 8 C -0.002 4.002 9 C 0.596 3.404 10 O -0.547 6.547 11 N -0.586 5.586 12 C 0.120 3.880 13 C -0.148 4.148 14 C 0.178 3.822 15 H 0.049 0.951 16 N -0.718 5.718 17 C -0.233 4.233 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.109 4.109 26 H 0.063 0.937 27 C -0.134 4.134 28 C 0.096 3.904 29 N -0.255 5.255 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.384 0.616 44 H 0.253 0.747 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -14.347 13.191 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.004 3.996 5 N -0.076 5.076 6 C -0.158 4.158 7 C -0.208 4.208 8 C -0.162 4.162 9 C 0.382 3.618 10 O -0.423 6.423 11 N -0.317 5.317 12 C -0.002 4.002 13 C -0.189 4.189 14 C 0.068 3.932 15 H 0.067 0.933 16 N -0.361 5.361 17 C -0.365 4.365 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.220 1.220 25 C -0.129 4.129 26 H 0.081 0.919 27 C -0.192 4.192 28 C -0.027 4.027 29 N -0.090 5.090 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.452 -14.460 12.511 20.906 hybrid contribution -0.441 0.980 0.037 1.075 sum 8.011 -13.480 12.548 20.084 Atomic orbital electron populations 1.22808 0.79637 1.03112 1.00782 1.87746 1.20829 1.26659 1.95678 1.22663 0.91983 0.85670 1.02660 1.21669 0.93228 0.78603 1.06063 1.45543 1.31143 1.11570 1.19368 1.22851 0.98077 0.96592 0.98248 1.21765 1.04742 0.95898 0.98357 1.22109 1.00967 0.94016 0.99138 1.16991 0.78910 0.85318 0.80561 1.90745 1.45119 1.37080 1.69404 1.47968 1.52695 1.10347 1.20686 1.21618 1.02562 0.83662 0.92337 1.22511 0.98528 1.02145 0.95732 1.20233 0.86385 0.90402 0.96229 0.93289 1.42477 1.01129 1.61384 1.31068 1.19287 0.90910 1.23231 1.03052 0.91216 1.24686 0.96337 1.01308 0.98536 1.69665 1.05265 1.49587 1.33717 0.86170 0.79249 0.79788 0.81304 1.20640 1.22054 1.22021 1.21705 0.99255 0.96974 0.94933 0.91892 1.21638 1.02344 0.95866 0.99387 1.22449 0.98676 0.87961 0.93654 1.73531 1.22827 0.97848 1.14772 0.93194 0.89178 0.93811 0.92495 0.90856 0.87853 0.87121 0.80154 0.82018 0.90310 0.89944 0.93365 0.90840 0.78124 0.93694 0.92936 0.93996 0.91102 0.90939 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.57 10.70 -35.23 -0.38 -3.95 16 3 C 0.05 0.42 6.04 37.16 0.22 0.65 16 4 C 0.13 0.92 6.77 -4.04 -0.03 0.89 16 5 N -0.29 -2.96 3.41 -61.33 -0.21 -3.17 16 6 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.19 10.81 -39.36 -0.43 -2.62 16 8 C 0.00 -0.03 6.82 -82.77 -0.56 -0.60 16 9 C 0.60 10.84 7.69 -12.39 -0.10 10.74 16 10 O -0.55 -11.14 16.36 5.31 0.09 -11.05 16 11 N -0.59 -10.61 2.97 -173.93 -0.52 -11.13 16 12 C 0.12 2.29 6.19 -3.71 -0.02 2.26 16 13 C -0.15 -2.75 5.78 -26.61 -0.15 -2.90 16 14 C 0.18 3.48 2.53 -67.89 -0.17 3.31 16 15 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 16 N -0.72 -17.01 3.64 -53.39 -0.19 -17.20 16 17 C -0.23 -6.23 9.93 -15.06 -0.15 -6.38 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 21 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C -0.11 -1.83 2.67 -90.50 -0.24 -2.07 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 C -0.13 -2.17 9.05 37.16 0.34 -1.83 16 28 C 0.10 1.64 5.09 -3.71 -0.02 1.62 16 29 N -0.25 -3.48 8.16 33.42 0.27 -3.21 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.50 8.04 -51.93 -0.42 0.08 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 40 H 0.08 1.77 7.74 -51.93 -0.40 1.37 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.38 9.69 5.93 -40.82 -0.24 9.45 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 48 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 49 H 0.12 1.83 4.19 -67.49 -0.28 1.54 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -32.65 393.35 -7.70 -40.35 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.90 Total: 9.40 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.49 Total: 3.64 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.08 Total: -61.44 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.29 Total: -15.00 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.65 -7.70 -40.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.255 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds