Wall clock time and date at job start Tue Mar 31 2020 19:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99989 * 2 1 4 4 C 1.53000 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47169 * 180.02562 * 4 3 2 6 6 C 1.35031 * 124.88206 * 125.00201 * 5 4 3 7 7 C 1.35364 * 107.22850 * 180.02562 * 6 5 4 8 8 C 1.41502 * 105.50050 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51651 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99993 * 352.88067 * 9 8 7 11 11 N 1.34782 * 120.00018 * 172.87823 * 9 8 7 12 12 C 1.46927 * 120.62841 * 173.01395 * 11 9 8 13 13 C 1.53195 * 108.77434 * 126.39421 * 12 11 9 14 14 C 1.53048 * 109.31170 * 54.63363 * 13 12 11 15 15 H 1.08995 * 109.45985 * 178.61184 * 14 13 12 16 16 N 1.46496 * 109.46107 * 58.65512 * 14 13 12 17 17 C 1.36934 * 119.99940 * 84.99776 * 16 14 13 18 18 H 1.07992 * 120.00239 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99947 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99769 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47375 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47388 * 120.00295 * 21 19 17 24 24 H 1.48507 * 109.46954 * 239.99872 * 21 19 17 25 25 C 1.53039 * 109.53610 * 298.63435 * 14 13 12 26 26 H 1.08993 * 109.49935 * 301.41423 * 25 14 13 27 27 C 1.52998 * 109.49685 * 181.34985 * 25 14 13 28 28 C 1.46923 * 120.63045 * 353.01802 * 11 9 8 29 29 N 1.28466 * 124.88380 * 305.32840 * 5 4 3 30 30 H 1.08993 * 109.47363 * 59.99572 * 1 2 3 31 31 H 1.09006 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46713 * 299.99408 * 1 2 3 33 33 H 1.09002 * 109.46884 * 60.00658 * 3 2 1 34 34 H 1.08995 * 109.47233 * 300.00244 * 3 2 1 35 35 H 1.09006 * 109.46997 * 60.00163 * 4 3 2 36 36 H 1.09002 * 109.47523 * 300.00510 * 4 3 2 37 37 H 1.08001 * 126.38700 * 0.02562 * 6 5 4 38 38 H 1.08001 * 127.25381 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.58978 * 6.60333 * 12 11 9 40 40 H 1.09003 * 109.58750 * 246.17832 * 12 11 9 41 41 H 1.08998 * 109.49883 * 294.68556 * 13 12 11 42 42 H 1.08996 * 109.49579 * 174.58193 * 13 12 11 43 43 H 0.97009 * 120.00007 * 265.00040 * 16 14 13 44 44 H 0.97003 * 119.99177 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.47444 * 59.99966 * 27 25 14 46 46 H 1.08997 * 109.47398 * 180.02562 * 27 25 14 47 47 H 1.09002 * 109.47512 * 300.00016 * 27 25 14 48 48 H 1.08996 * 109.58774 * 113.81415 * 28 11 9 49 49 H 1.08999 * 109.58604 * 353.39014 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3347 4.2442 0.5737 8 6 4.5719 4.5262 -0.5843 9 6 4.5566 5.7957 -1.3392 10 8 5.1454 6.7673 -0.9064 11 7 3.8900 5.8770 -2.5077 12 6 3.7362 7.1672 -3.1937 13 6 4.2381 7.0227 -4.6339 14 6 3.5077 5.8602 -5.3102 15 1 3.8451 5.7709 -6.3428 16 7 2.0646 6.1118 -5.2887 17 6 1.4877 6.8732 -6.2698 18 1 2.0964 7.2878 -7.0597 19 6 0.1202 7.1111 -6.2497 20 7 -0.6217 6.6054 -5.2873 21 14 -0.6669 8.1491 -7.5885 22 1 0.3765 8.5967 -8.5457 23 1 -1.6848 7.3413 -8.3072 24 1 -1.3182 9.3352 -6.9766 25 6 3.8099 4.5606 -4.5608 26 1 4.8856 4.3856 -4.5551 27 6 3.1064 3.3940 -5.2573 28 6 3.3031 4.6771 -3.1197 29 7 3.8738 3.4423 -0.8584 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4203 2.4140 1.7468 38 1 6.0194 4.9065 1.0826 39 1 4.3218 7.9277 -2.6772 40 1 2.6848 7.4545 -3.2003 41 1 5.3099 6.8245 -4.6275 42 1 4.0412 7.9441 -5.1819 43 1 1.5178 5.7391 -4.5794 44 1 -1.5772 6.7720 -5.2732 45 1 3.4656 3.3134 -6.2832 46 1 3.3215 2.4687 -4.7230 47 1 2.0305 3.5688 -5.2618 48 1 2.2164 4.7614 -3.1202 49 1 3.6030 3.7947 -2.5545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036102632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:27 Heat of formation + Delta-G solvation = 6.695373 kcal Electronic energy + Delta-G solvation = -30430.947565 eV Core-core repulsion = 26395.191347 eV Total energy + Delta-G solvation = -4035.756217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.71966 -41.11431 -39.12172 -38.92936 -35.88869 -34.98660 -34.24483 -33.25605 -31.78461 -31.12859 -30.29957 -27.60879 -27.43529 -26.64631 -25.64858 -24.69686 -23.39234 -22.50766 -22.28668 -20.82383 -19.79266 -19.28351 -18.46305 -17.90347 -17.59634 -17.08666 -16.94721 -16.70813 -16.49645 -16.09839 -15.88002 -15.62692 -15.42983 -15.16586 -14.72335 -14.65631 -14.48987 -14.31428 -14.10941 -13.97146 -13.53342 -13.17020 -13.00128 -12.95654 -12.89514 -12.67009 -12.61049 -12.43774 -12.32718 -12.09784 -12.00358 -11.88880 -11.69853 -11.54128 -11.33466 -10.89743 -10.80642 -10.75099 -10.25129 -10.06312 -9.57912 -8.92941 -7.89636 -5.15529 0.47689 1.18863 1.34140 1.47634 1.48893 1.57713 2.02689 2.32614 2.59011 2.77358 3.34283 3.44584 3.66611 3.83201 3.85406 3.89434 3.99628 4.04842 4.14006 4.20368 4.24243 4.32171 4.43396 4.45370 4.49126 4.53377 4.62188 4.64301 4.69172 4.73027 4.76636 4.81813 4.84381 4.95472 4.96784 5.08132 5.13405 5.16149 5.24503 5.32176 5.36837 5.52710 5.60503 5.65837 5.89755 6.02112 6.32644 6.39362 6.83276 7.12800 7.39963 8.15971 8.40485 9.34099 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.003632 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.227741 B = 7707.155982 C = 9430.625149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.279 5.279 6 C 0.016 3.984 7 C -0.198 4.198 8 C -0.036 4.036 9 C 0.592 3.408 10 O -0.577 6.577 11 N -0.590 5.590 12 C 0.127 3.873 13 C -0.138 4.138 14 C 0.173 3.827 15 H 0.049 0.951 16 N -0.723 5.723 17 C -0.227 4.227 18 H 0.074 0.926 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.300 1.300 25 C -0.101 4.101 26 H 0.083 0.917 27 C -0.126 4.126 28 C 0.106 3.894 29 N -0.275 5.275 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.234 0.766 38 H 0.167 0.833 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.374 0.626 44 H 0.247 0.753 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.043 0.957 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 -16.722 14.207 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.068 5.068 6 C -0.126 4.126 7 C -0.226 4.226 8 C -0.194 4.194 9 C 0.381 3.619 10 O -0.456 6.456 11 N -0.320 5.320 12 C 0.004 3.996 13 C -0.179 4.179 14 C 0.064 3.936 15 H 0.067 0.933 16 N -0.364 5.364 17 C -0.359 4.359 18 H 0.092 0.908 19 C -0.265 4.265 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.224 1.224 24 H -0.227 1.227 25 C -0.121 4.121 26 H 0.101 0.899 27 C -0.184 4.184 28 C -0.017 4.017 29 N -0.112 5.112 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.170 0.830 37 H 0.251 0.749 38 H 0.185 0.815 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.207 0.793 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.339 -16.847 13.501 23.937 hybrid contribution -0.980 1.614 -0.184 1.898 sum 9.359 -15.233 13.317 22.293 Atomic orbital electron populations 1.22954 0.78992 1.04290 1.00676 1.87726 1.21606 1.26606 1.95650 1.22600 0.93258 0.85491 1.01484 1.21984 0.91881 0.77208 1.08539 1.45837 1.30628 1.11711 1.18586 1.23538 0.95701 0.95389 0.98017 1.21994 1.05215 0.97623 0.97804 1.21808 1.03411 0.93506 1.00684 1.17456 0.77996 0.86313 0.80185 1.90706 1.46425 1.38539 1.69962 1.48002 1.52963 1.10011 1.21070 1.21375 1.00481 0.84655 0.93059 1.22385 0.99509 1.01180 0.94846 1.20440 0.84126 0.92230 0.96813 0.93305 1.42577 1.02819 1.60885 1.30123 1.19630 0.91075 1.22154 1.03088 0.90794 1.25382 0.97082 1.03256 1.00738 1.69817 1.05016 1.51556 1.35678 0.85200 0.78340 0.77901 0.79107 1.19209 1.22386 1.22727 1.21659 1.00422 0.95726 0.94263 0.89866 1.21550 1.00063 0.96683 1.00105 1.22406 0.96833 0.88337 0.94126 1.73323 1.23168 0.98230 1.16440 0.94195 0.87415 0.93082 0.92458 0.93412 0.87044 0.83027 0.74949 0.81519 0.90406 0.93173 0.91244 0.91821 0.79272 0.94378 0.92313 0.91274 0.94237 0.93850 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -6.51 10.70 -148.98 -1.59 -8.10 16 3 C 0.05 0.79 6.04 71.98 0.43 1.22 16 4 C 0.12 1.36 6.77 86.38 0.58 1.95 16 5 N -0.28 -4.86 3.41 -347.93 -1.19 -6.04 16 6 C 0.02 0.23 11.40 83.54 0.95 1.18 16 7 C -0.20 -4.43 10.81 22.41 0.24 -4.18 16 8 C -0.04 -1.07 6.82 42.46 0.29 -0.78 16 9 C 0.59 21.88 7.69 86.75 0.67 22.55 16 10 O -0.58 -24.07 16.36 -3.93 -0.06 -24.13 16 11 N -0.59 -21.89 2.97 -822.45 -2.44 -24.33 16 12 C 0.13 5.03 6.19 86.36 0.53 5.56 16 13 C -0.14 -5.16 5.78 30.68 0.18 -4.98 16 14 C 0.17 6.78 2.53 45.02 0.11 6.89 16 15 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 16 N -0.72 -35.21 3.64 -322.81 -1.18 -36.38 16 17 C -0.23 -12.33 9.93 84.04 0.83 -11.50 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.97 -58.96 13.06 21.66 0.28 -58.67 16 21 Si 0.96 46.38 29.55 68.60 2.03 48.41 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 25 C -0.10 -3.34 2.67 -10.72 -0.03 -3.37 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 C -0.13 -3.95 9.05 71.98 0.65 -3.30 16 28 C 0.11 3.67 5.09 86.36 0.44 4.11 16 29 N -0.27 -7.16 8.16 -48.18 -0.39 -7.55 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.15 0.52 8.04 -2.39 -0.02 0.50 16 37 H 0.23 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.08 3.07 7.00 -2.39 -0.02 3.05 16 40 H 0.05 2.30 7.74 -2.39 -0.02 2.28 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.37 19.77 5.93 -92.70 -0.55 19.22 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 48 H 0.04 1.76 6.64 -2.39 -0.02 1.74 16 49 H 0.14 4.20 4.19 -22.52 -0.09 4.10 16 Total: -1.00 -73.76 393.35 3.38 -70.38 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.32 Total: 33.13 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 7.61 Total: 13.30 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -4.92 Total: -132.99 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.66 Total: -32.24 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.76 3.38 -70.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.079 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds