Wall clock time and date at job start Tue Mar 31 2020 19:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00224 * 2 1 4 4 C 1.52998 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47268 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88619 * 125.00418 * 5 4 3 7 7 C 1.35371 * 107.22887 * 179.75031 * 6 5 4 8 8 C 1.41505 * 105.50283 * 0.40767 * 7 6 5 9 9 C 1.47704 * 126.51637 * 179.84631 * 8 7 6 10 10 O 1.21566 * 120.00402 * 6.42873 * 9 8 7 11 11 N 1.34782 * 119.99818 * 186.14900 * 9 8 7 12 12 C 1.46924 * 120.62887 * 175.34034 * 11 9 8 13 13 C 1.52762 * 109.00862 * 233.58507 * 12 11 9 14 14 C 1.53045 * 109.38239 * 305.58911 * 13 12 11 15 15 H 1.08997 * 109.46108 * 301.21925 * 14 13 12 16 16 N 1.46498 * 109.46068 * 181.25950 * 14 13 12 17 17 C 1.36930 * 120.00136 * 84.93144 * 16 14 13 18 18 H 1.08004 * 120.00335 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00405 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99484 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00290 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46812 * 120.00374 * 21 19 17 24 24 H 1.48496 * 109.47502 * 239.99887 * 21 19 17 25 25 C 1.53043 * 109.53766 * 61.24010 * 14 13 12 26 26 H 1.08998 * 109.52736 * 58.60035 * 25 14 13 27 27 C 1.52998 * 109.49654 * 178.68294 * 25 14 13 28 28 C 1.46924 * 120.62977 * 355.62197 * 11 9 8 29 29 N 1.28477 * 124.88291 * 305.02499 * 5 4 3 30 30 H 1.09002 * 109.46884 * 300.00526 * 1 2 3 31 31 H 1.09003 * 109.47396 * 59.99531 * 1 2 3 32 32 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47512 * 59.99866 * 3 2 1 34 34 H 1.09004 * 109.47131 * 300.00026 * 3 2 1 35 35 H 1.09004 * 109.46885 * 60.00290 * 4 3 2 36 36 H 1.08998 * 109.47754 * 299.99905 * 4 3 2 37 37 H 1.07994 * 126.38649 * 0.03391 * 6 5 4 38 38 H 1.07995 * 127.24931 * 180.28099 * 7 6 5 39 39 H 1.09004 * 109.58846 * 353.42210 * 12 11 9 40 40 H 1.09001 * 109.58745 * 113.84362 * 12 11 9 41 41 H 1.09000 * 109.56631 * 185.55293 * 13 12 11 42 42 H 1.08999 * 109.35938 * 65.49676 * 13 12 11 43 43 H 0.97004 * 119.99949 * 264.93809 * 16 14 13 44 44 H 0.97005 * 119.99621 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.47023 * 179.83526 * 27 25 14 46 46 H 1.08991 * 109.47042 * 299.83724 * 27 25 14 47 47 H 1.09000 * 109.47264 * 59.84087 * 27 25 14 48 48 H 1.09006 * 109.58485 * 246.15435 * 28 11 9 49 49 H 1.09004 * 109.58948 * 6.58027 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 -0.0013 6 6 5.0264 2.9701 0.9055 7 6 5.3401 4.2423 0.5655 8 6 4.5722 4.5255 -0.5888 9 6 4.5569 5.7944 -1.3448 10 8 5.3368 6.6819 -1.0586 11 7 3.6822 5.9660 -2.3557 12 6 3.5848 7.2571 -3.0503 13 6 2.1299 7.7224 -3.0338 14 6 1.2388 6.6245 -3.6193 15 1 1.5575 6.4028 -4.6378 16 7 -0.1533 7.0807 -3.6322 17 6 -0.6172 7.8342 -4.6771 18 1 0.0430 8.0919 -5.4921 19 6 -1.9364 8.2661 -4.6896 20 7 -2.7411 7.9517 -3.6966 21 14 -2.5691 9.2947 -6.1148 22 1 -1.4743 9.5088 -7.0950 23 1 -3.6935 8.5852 -6.7763 24 1 -3.0426 10.6071 -5.6064 25 6 1.3534 5.3613 -2.7629 26 1 1.0583 5.5877 -1.7384 27 6 0.4374 4.2750 -3.3300 28 6 2.8035 4.8675 -2.7800 29 7 3.8774 3.4399 -0.8645 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8575 0.6434 0.8891 37 1 5.4221 2.4147 1.7430 38 1 6.0295 4.9028 1.0702 39 1 4.2082 7.9931 -2.5425 40 1 3.9174 7.1430 -4.0820 41 1 2.0298 8.6290 -3.6307 42 1 1.8276 7.9271 -2.0068 43 1 -0.7463 6.8491 -2.9003 44 1 -3.6629 8.2539 -3.7051 45 1 0.5215 3.3746 -2.7215 46 1 -0.5942 4.6268 -3.3177 47 1 0.7322 4.0496 -4.3549 48 1 3.0711 4.5546 -3.7892 49 1 2.9115 4.0274 -2.0939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036102636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:36 Heat of formation + Delta-G solvation = 4.802344 kcal Electronic energy + Delta-G solvation = -30180.535460 eV Core-core repulsion = 26144.697154 eV Total energy + Delta-G solvation = -4035.838305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.73387 -41.06907 -39.07546 -38.89527 -36.20526 -35.00770 -34.23090 -33.34019 -31.87111 -31.22983 -30.28560 -27.61570 -27.41795 -26.75219 -25.52227 -24.15151 -23.39524 -22.50978 -22.23599 -21.22240 -20.31228 -19.14220 -18.48880 -17.97998 -17.50237 -17.10192 -16.94621 -16.73817 -16.68248 -16.07055 -15.72065 -15.60027 -15.47818 -15.22033 -14.80251 -14.68543 -14.41226 -14.22005 -14.03517 -13.89370 -13.73845 -13.23544 -13.05072 -12.97187 -12.88425 -12.77579 -12.63713 -12.51588 -12.29430 -12.10870 -12.03847 -11.85026 -11.75574 -11.58135 -11.33798 -10.92147 -10.74846 -10.67821 -10.29923 -10.08693 -9.65855 -8.97698 -7.92457 -5.19878 0.46107 1.18315 1.31877 1.47200 1.47933 1.57458 1.98437 2.32745 2.56957 2.77849 3.32033 3.40907 3.65859 3.80185 3.80896 3.86335 3.99301 4.03514 4.09184 4.17304 4.24863 4.35151 4.36979 4.47517 4.48067 4.51298 4.65579 4.67470 4.69700 4.70632 4.75992 4.78034 4.83761 4.86961 4.94743 4.99136 5.04989 5.13627 5.28243 5.35120 5.43753 5.52357 5.56658 5.63824 5.92358 6.03922 6.29139 6.33643 6.83087 7.11551 7.35930 8.11055 8.35561 9.31238 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003350 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.557048 B = 8356.265433 C =10487.203300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.278 5.278 6 C 0.017 3.983 7 C -0.200 4.200 8 C -0.034 4.034 9 C 0.594 3.406 10 O -0.575 6.575 11 N -0.595 5.595 12 C 0.120 3.880 13 C -0.139 4.139 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.730 5.730 17 C -0.232 4.232 18 H 0.075 0.925 19 C -0.074 4.074 20 N -0.970 5.970 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.297 1.297 25 C -0.096 4.096 26 H 0.050 0.950 27 C -0.124 4.124 28 C 0.089 3.911 29 N -0.273 5.273 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.149 0.851 37 H 0.232 0.768 38 H 0.166 0.834 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.016 -20.039 10.626 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.030 4.030 4 C 0.003 3.997 5 N -0.067 5.067 6 C -0.126 4.126 7 C -0.228 4.228 8 C -0.192 4.192 9 C 0.382 3.618 10 O -0.454 6.454 11 N -0.325 5.325 12 C -0.002 4.002 13 C -0.180 4.180 14 C 0.070 3.930 15 H 0.065 0.935 16 N -0.369 5.369 17 C -0.364 4.364 18 H 0.093 0.907 19 C -0.266 4.266 20 N -0.621 5.621 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.225 1.225 25 C -0.116 4.116 26 H 0.068 0.932 27 C -0.182 4.182 28 C -0.034 4.034 29 N -0.109 5.109 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.184 0.816 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.708 -20.230 9.827 26.873 hybrid contribution -0.877 1.743 -0.028 1.951 sum 13.831 -18.487 9.799 25.081 Atomic orbital electron populations 1.22950 0.78976 1.04226 1.00776 1.87730 1.21566 1.26655 1.95664 1.22630 0.93076 0.85557 1.01728 1.21991 0.92025 0.77189 1.08516 1.45867 1.30619 1.11760 1.18431 1.23523 0.95543 0.95472 0.98061 1.21993 1.04958 0.97691 0.98142 1.21822 1.03063 0.93488 1.00830 1.17429 0.80055 0.85389 0.78921 1.90724 1.41562 1.44096 1.69002 1.48064 1.37261 1.14004 1.33189 1.21521 0.96625 0.84672 0.97425 1.22392 0.94509 1.00510 1.00578 1.20437 0.84151 0.91627 0.96749 0.93524 1.42569 1.07586 1.62339 1.24365 1.19631 0.94204 1.23231 0.99300 0.90718 1.25463 0.97007 1.03458 1.00713 1.69824 1.05822 1.52436 1.34003 0.85153 0.78064 0.77832 0.79230 1.19099 1.22154 1.22482 1.21564 0.95560 0.95722 0.98725 0.93174 1.21522 0.98716 0.97193 1.00737 1.22873 0.86916 0.90539 1.03093 1.72955 1.22721 0.98312 1.16886 0.93312 0.93808 0.87595 0.92585 0.92780 0.86920 0.83291 0.75123 0.81628 0.90014 0.90009 0.91753 0.94198 0.79697 0.94230 0.91359 0.94147 0.92506 0.90822 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -5.74 10.70 -148.98 -1.59 -7.33 16 3 C 0.05 0.64 6.04 71.98 0.43 1.08 16 4 C 0.12 1.08 6.77 86.38 0.58 1.67 16 5 N -0.28 -4.19 3.41 -347.95 -1.19 -5.37 16 6 C 0.02 0.21 11.40 83.54 0.95 1.16 16 7 C -0.20 -4.09 10.81 22.41 0.24 -3.84 16 8 C -0.03 -0.91 6.90 42.46 0.29 -0.62 16 9 C 0.59 19.71 7.70 86.74 0.67 20.38 16 10 O -0.58 -22.10 16.36 -3.92 -0.06 -22.16 16 11 N -0.59 -18.93 2.98 -823.28 -2.45 -21.38 16 12 C 0.12 3.92 6.39 86.22 0.55 4.48 16 13 C -0.14 -5.28 5.64 30.53 0.17 -5.11 16 14 C 0.18 7.14 2.20 45.02 0.10 7.24 16 15 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 16 N -0.73 -36.59 4.41 -322.81 -1.42 -38.01 16 17 C -0.23 -12.76 9.93 84.04 0.83 -11.93 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 25 C -0.10 -3.20 2.46 -10.72 -0.03 -3.23 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 C -0.12 -3.90 9.02 71.98 0.65 -3.25 16 28 C 0.09 2.55 5.61 86.36 0.48 3.04 16 29 N -0.27 -6.16 8.00 -48.18 -0.39 -6.54 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.15 0.29 8.04 -2.39 -0.02 0.27 16 37 H 0.23 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.08 2.75 7.03 -2.38 -0.02 2.73 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.37 20.22 7.50 -92.71 -0.70 19.52 16 44 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.15 3.93 3.71 -87.07 -0.32 3.61 16 Total: -1.00 -74.55 396.94 2.79 -71.76 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.06 Total: 30.87 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 7.65 Total: 8.84 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -5.16 Total: -130.39 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.66 Total: -29.50 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.55 2.79 -71.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.560 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds