Wall clock time and date at job start Tue Mar 31 2020 19:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.52997 * 109.47408 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47635 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75812 * 124.99612 * 5 4 3 7 7 C 1.38047 * 107.41664 * 179.97438 * 6 5 4 8 8 C 1.47429 * 126.41295 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00035 * 317.09642 * 8 7 6 10 10 N 1.34771 * 119.99909 * 137.09419 * 8 7 6 11 11 C 1.46929 * 120.62971 * 3.42169 * 10 8 7 12 12 C 1.52764 * 109.00984 * 233.58364 * 11 10 8 13 13 C 1.53040 * 109.38496 * 305.59390 * 12 11 10 14 14 H 1.08998 * 109.46288 * 181.26138 * 13 12 11 15 15 N 1.46503 * 109.45455 * 301.21423 * 13 12 11 16 16 C 1.36933 * 120.00400 * 275.06694 * 15 13 12 17 17 H 1.08004 * 119.99777 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00423 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99486 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47141 * 89.99882 * 20 18 16 22 22 H 1.48501 * 109.46920 * 210.00025 * 20 18 16 23 23 H 1.48506 * 109.47191 * 329.99915 * 20 18 16 24 24 C 1.53040 * 109.54189 * 61.23523 * 13 12 11 25 25 H 1.08996 * 109.52004 * 58.60369 * 24 13 12 26 26 C 1.52998 * 109.49810 * 178.68555 * 24 13 12 27 27 C 1.46930 * 120.63444 * 183.70549 * 10 8 7 28 28 C 1.41288 * 107.17151 * 0.02562 * 7 6 5 29 29 N 1.30442 * 108.02332 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46848 * 299.99834 * 1 2 3 32 32 H 1.08999 * 109.47518 * 59.99714 * 1 2 3 33 33 H 1.09005 * 109.47580 * 60.00122 * 3 2 1 34 34 H 1.09007 * 109.47356 * 300.00285 * 3 2 1 35 35 H 1.08997 * 109.47374 * 59.99191 * 4 3 2 36 36 H 1.09007 * 109.46680 * 300.00190 * 4 3 2 37 37 H 1.07999 * 126.28957 * 0.24699 * 6 5 4 38 38 H 1.08996 * 109.58712 * 353.41745 * 11 10 8 39 39 H 1.09004 * 109.58319 * 113.84710 * 11 10 8 40 40 H 1.08996 * 109.56650 * 185.55064 * 12 11 10 41 41 H 1.09001 * 109.35603 * 65.49746 * 12 11 10 42 42 H 0.97006 * 120.00177 * 95.07508 * 15 13 12 43 43 H 0.96995 * 119.99390 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.47009 * 179.83756 * 26 24 13 45 45 H 1.09000 * 109.47108 * 299.84205 * 26 24 13 46 46 H 1.09003 * 109.46843 * 59.83975 * 26 24 13 47 47 H 1.08998 * 109.58393 * 246.15736 * 27 10 8 48 48 H 1.08999 * 109.58149 * 6.58097 * 27 10 8 49 49 H 1.07998 * 125.98925 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0216 2.9849 0.8924 7 6 5.3274 4.2833 0.5369 8 6 6.2629 5.1844 1.2343 9 8 6.2610 5.2411 2.4490 10 7 7.1203 5.9452 0.5255 11 6 7.0841 5.9437 -0.9433 12 6 8.4813 5.6297 -1.4753 13 6 9.4873 6.6125 -0.8719 14 1 10.4811 6.4038 -1.2678 15 7 9.1009 7.9819 -1.2209 16 6 9.4909 8.5193 -2.4185 17 1 10.0829 7.9334 -3.1060 18 6 9.1253 9.8171 -2.7489 19 7 8.4042 10.5312 -1.9108 20 14 9.6567 10.5498 -4.3830 21 1 8.6264 10.2620 -5.4129 22 1 9.8151 12.0192 -4.2383 23 1 10.9510 9.9507 -4.7966 24 6 9.5025 6.4594 0.6507 25 1 9.7659 5.4343 0.9110 26 6 10.5320 7.4193 1.2503 27 6 8.1132 6.7872 1.2068 28 6 4.5749 4.5873 -0.6196 29 7 3.8687 3.5353 -0.9298 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8568 0.6438 -0.8907 36 1 3.8574 0.6435 0.8892 37 1 5.4276 2.4393 1.7314 38 1 6.3832 5.1847 -1.2908 39 1 6.7715 6.9244 -1.3021 40 1 8.4879 5.7229 -2.5612 41 1 8.7541 4.6122 -1.1953 42 1 8.5690 8.5081 -0.6035 43 1 8.1484 11.4378 -2.1419 44 1 10.5404 7.3119 2.3350 45 1 11.5203 7.1857 0.8543 46 1 10.2687 8.4442 0.9887 47 1 7.8862 7.8380 1.0269 48 1 8.0910 6.5845 2.2775 49 1 4.5836 5.5259 -1.1539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036276017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:01 Heat of formation + Delta-G solvation = 18.213005 kcal Electronic energy + Delta-G solvation = -29582.661795 eV Core-core repulsion = 25547.405020 eV Total energy + Delta-G solvation = -4035.256775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57839 -39.61699 -38.41949 -37.48107 -34.47899 -33.95199 -32.76646 -31.37243 -30.59623 -29.58724 -29.13302 -26.94145 -26.09515 -25.03584 -23.87206 -23.49694 -22.14059 -21.65167 -20.88634 -19.56902 -18.35179 -17.54511 -17.32048 -16.77156 -16.66526 -16.09053 -15.79469 -15.50642 -15.00637 -14.83061 -14.44273 -14.25437 -14.21968 -13.94048 -13.76375 -13.34532 -13.23456 -13.10314 -12.64229 -12.50648 -12.45577 -12.17327 -12.04264 -11.83028 -11.49987 -11.31937 -11.14489 -11.06120 -10.89409 -10.74872 -10.45098 -10.41536 -10.22409 -10.17397 -9.80742 -9.69626 -9.58051 -9.50982 -8.91100 -8.73442 -8.12280 -6.95381 -5.77480 -3.05572 1.48650 1.97879 2.21545 3.18668 3.30976 3.42461 3.48495 3.49729 3.52825 4.18158 4.41928 4.58817 4.61236 4.65048 4.76365 4.86352 4.87412 5.01545 5.09741 5.18178 5.20742 5.28268 5.38543 5.40124 5.42428 5.56178 5.62467 5.65081 5.78325 5.89611 5.98363 6.11235 6.14415 6.28422 6.30230 6.37620 6.46987 6.49727 6.54138 6.65053 6.70249 6.73350 6.81354 6.97796 7.06568 7.40244 7.70247 7.81693 8.41200 8.50517 9.52806 10.09952 10.45170 11.44889 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002537 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.041985 B =11035.276300 C =12134.047227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.137 3.863 5 N -0.365 5.365 6 C 0.116 3.884 7 C -0.275 4.275 8 C 0.591 3.409 9 O -0.558 6.558 10 N -0.593 5.593 11 C 0.107 3.893 12 C -0.149 4.149 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.108 4.108 25 H 0.065 0.935 26 C -0.137 4.137 27 C 0.121 3.879 28 C 0.086 3.914 29 N -0.298 5.298 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.185 0.815 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.043 0.957 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.355 -19.663 5.430 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.146 5.146 6 C -0.034 4.034 7 C -0.290 4.290 8 C 0.379 3.621 9 O -0.437 6.437 10 N -0.324 5.324 11 C -0.016 4.016 12 C -0.190 4.190 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.361 5.361 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.128 4.128 25 H 0.083 0.917 26 C -0.195 4.195 27 C -0.002 4.002 28 C -0.101 4.101 29 N -0.117 5.117 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.202 0.798 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.087 -20.380 5.076 23.749 hybrid contribution 0.459 1.230 -0.367 1.363 sum -10.628 -19.150 4.709 22.402 Atomic orbital electron populations 1.22783 0.79927 1.03086 1.00446 1.87770 1.20602 1.26971 1.95624 1.22666 0.92544 0.85303 1.02208 1.21433 0.92661 0.78838 1.05543 1.48240 1.33330 1.11947 1.21117 1.22818 0.91667 0.94498 0.94380 1.20277 1.09592 0.96425 1.02692 1.17270 0.79590 0.79132 0.86089 1.90737 1.71142 1.68285 1.13575 1.47938 1.33591 1.43301 1.07555 1.21902 0.98551 1.02936 0.78191 1.22431 0.96279 0.98857 1.01415 1.20218 0.95644 0.86533 0.90811 0.93240 1.42475 1.63664 1.09591 1.20339 1.19214 1.26921 0.96005 0.94568 0.91303 1.24700 1.00903 0.96983 0.98247 1.69650 1.42192 1.10285 1.35901 0.86244 0.78052 0.78384 0.83806 1.21863 1.21930 1.20907 1.21699 0.94523 0.99270 0.97301 0.91696 1.21668 0.98139 1.00938 0.98765 1.21646 0.86783 0.94608 0.97120 1.24234 0.93416 0.97992 0.94481 1.77169 1.24308 0.96801 1.13454 0.89180 0.93795 0.93651 0.92537 0.91386 0.88411 0.87475 0.79842 0.90395 0.89750 0.90854 0.93486 0.78069 0.93561 0.93780 0.92870 0.91016 0.90615 0.89805 0.78784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.17 10.70 -35.23 -0.38 -3.54 16 3 C 0.05 0.39 6.11 37.16 0.23 0.62 16 4 C 0.14 1.02 6.86 -4.05 -0.03 0.99 16 5 N -0.37 -3.85 3.65 -60.81 -0.22 -4.07 16 6 C 0.12 1.29 11.44 -16.56 -0.19 1.10 16 7 C -0.28 -3.79 5.33 -105.07 -0.56 -4.35 16 8 C 0.59 9.76 7.59 -12.52 -0.09 9.66 16 9 O -0.56 -10.72 16.52 5.27 0.09 -10.63 16 10 N -0.59 -9.71 2.98 -174.29 -0.52 -10.23 16 11 C 0.11 1.70 5.42 -3.93 -0.02 1.68 16 12 C -0.15 -2.46 5.76 -26.83 -0.15 -2.62 16 13 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 N -0.72 -16.33 3.64 -53.38 -0.19 -16.53 16 16 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 17 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 20 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.11 -1.76 2.67 -90.50 -0.24 -2.01 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 C -0.14 -2.20 9.06 37.16 0.34 -1.86 16 27 C 0.12 2.05 5.41 -3.71 -0.02 2.03 16 28 C 0.09 1.12 9.58 -16.98 -0.16 0.95 16 29 N -0.30 -3.78 12.33 30.86 0.38 -3.40 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.22 8.14 -51.92 -0.42 -0.21 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.56 8.06 -51.93 -0.42 0.14 16 37 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.08 1.09 4.16 -51.93 -0.22 0.88 16 39 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.38 9.38 5.92 -40.82 -0.24 9.13 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 47 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 48 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 49 H 0.20 2.30 7.10 -52.49 -0.37 1.92 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -31.94 393.97 -7.21 -39.15 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.79 Total: 8.81 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.21 Total: 3.95 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.17 Total: -60.39 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.94 -7.21 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036276017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.366 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds