Wall clock time and date at job start Tue Mar 31 2020 19:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.52997 * 109.47408 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47635 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75812 * 124.99612 * 5 4 3 7 7 C 1.38047 * 107.41664 * 179.97438 * 6 5 4 8 8 C 1.47429 * 126.41295 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00035 * 317.09642 * 8 7 6 10 10 N 1.34771 * 119.99909 * 137.09419 * 8 7 6 11 11 C 1.46929 * 120.62971 * 3.42169 * 10 8 7 12 12 C 1.52764 * 109.00984 * 233.58364 * 11 10 8 13 13 C 1.53040 * 109.38496 * 305.59390 * 12 11 10 14 14 H 1.08998 * 109.46288 * 181.26138 * 13 12 11 15 15 N 1.46503 * 109.45455 * 301.21423 * 13 12 11 16 16 C 1.36933 * 120.00400 * 275.06694 * 15 13 12 17 17 H 1.08004 * 119.99777 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00423 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99486 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47141 * 89.99882 * 20 18 16 22 22 H 1.48501 * 109.46920 * 210.00025 * 20 18 16 23 23 H 1.48506 * 109.47191 * 329.99915 * 20 18 16 24 24 C 1.53040 * 109.54189 * 61.23523 * 13 12 11 25 25 H 1.08996 * 109.52004 * 58.60369 * 24 13 12 26 26 C 1.52998 * 109.49810 * 178.68555 * 24 13 12 27 27 C 1.46930 * 120.63444 * 183.70549 * 10 8 7 28 28 C 1.41288 * 107.17151 * 0.02562 * 7 6 5 29 29 N 1.30442 * 108.02332 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46848 * 299.99834 * 1 2 3 32 32 H 1.08999 * 109.47518 * 59.99714 * 1 2 3 33 33 H 1.09005 * 109.47580 * 60.00122 * 3 2 1 34 34 H 1.09007 * 109.47356 * 300.00285 * 3 2 1 35 35 H 1.08997 * 109.47374 * 59.99191 * 4 3 2 36 36 H 1.09007 * 109.46680 * 300.00190 * 4 3 2 37 37 H 1.07999 * 126.28957 * 0.24699 * 6 5 4 38 38 H 1.08996 * 109.58712 * 353.41745 * 11 10 8 39 39 H 1.09004 * 109.58319 * 113.84710 * 11 10 8 40 40 H 1.08996 * 109.56650 * 185.55064 * 12 11 10 41 41 H 1.09001 * 109.35603 * 65.49746 * 12 11 10 42 42 H 0.97006 * 120.00177 * 95.07508 * 15 13 12 43 43 H 0.96995 * 119.99390 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.47009 * 179.83756 * 26 24 13 45 45 H 1.09000 * 109.47108 * 299.84205 * 26 24 13 46 46 H 1.09003 * 109.46843 * 59.83975 * 26 24 13 47 47 H 1.08998 * 109.58393 * 246.15736 * 27 10 8 48 48 H 1.08999 * 109.58149 * 6.58097 * 27 10 8 49 49 H 1.07998 * 125.98925 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0216 2.9849 0.8924 7 6 5.3274 4.2833 0.5369 8 6 6.2629 5.1844 1.2343 9 8 6.2610 5.2411 2.4490 10 7 7.1203 5.9452 0.5255 11 6 7.0841 5.9437 -0.9433 12 6 8.4813 5.6297 -1.4753 13 6 9.4873 6.6125 -0.8719 14 1 10.4811 6.4038 -1.2678 15 7 9.1009 7.9819 -1.2209 16 6 9.4909 8.5193 -2.4185 17 1 10.0829 7.9334 -3.1060 18 6 9.1253 9.8171 -2.7489 19 7 8.4042 10.5312 -1.9108 20 14 9.6567 10.5498 -4.3830 21 1 8.6264 10.2620 -5.4129 22 1 9.8151 12.0192 -4.2383 23 1 10.9510 9.9507 -4.7966 24 6 9.5025 6.4594 0.6507 25 1 9.7659 5.4343 0.9110 26 6 10.5320 7.4193 1.2503 27 6 8.1132 6.7872 1.2068 28 6 4.5749 4.5873 -0.6196 29 7 3.8687 3.5353 -0.9298 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8568 0.6438 -0.8907 36 1 3.8574 0.6435 0.8892 37 1 5.4276 2.4393 1.7314 38 1 6.3832 5.1847 -1.2908 39 1 6.7715 6.9244 -1.3021 40 1 8.4879 5.7229 -2.5612 41 1 8.7541 4.6122 -1.1953 42 1 8.5690 8.5081 -0.6035 43 1 8.1484 11.4378 -2.1419 44 1 10.5404 7.3119 2.3350 45 1 11.5203 7.1857 0.8543 46 1 10.2687 8.4442 0.9887 47 1 7.8862 7.8380 1.0269 48 1 8.0910 6.5845 2.2775 49 1 4.5836 5.5259 -1.1539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036276017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:00 Heat of formation + Delta-G solvation = -2.397228 kcal Electronic energy + Delta-G solvation = -29583.555522 eV Core-core repulsion = 25547.405020 eV Total energy + Delta-G solvation = -4036.150502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53953 -40.92018 -39.04519 -38.85253 -35.86081 -35.04941 -34.27457 -32.96118 -31.52862 -30.88139 -30.40058 -27.78190 -27.10275 -26.50519 -25.31952 -24.57893 -23.25549 -23.00389 -21.76488 -20.76319 -19.70700 -19.21822 -18.51252 -17.63616 -17.41064 -17.13608 -16.63378 -16.56260 -16.43041 -16.00947 -15.87667 -15.59489 -15.35768 -15.13111 -14.83116 -14.73843 -14.36798 -14.28686 -14.16114 -13.72317 -13.49496 -13.11148 -12.96373 -12.87653 -12.83153 -12.68453 -12.60337 -12.36658 -12.34610 -12.08909 -12.00917 -11.91225 -11.80953 -11.53569 -11.12097 -10.92562 -10.80060 -10.78239 -10.56140 -9.77302 -9.46829 -8.87864 -7.85351 -5.11016 0.57760 1.13949 1.21768 1.51326 1.51822 1.59441 1.97600 2.28310 2.62345 2.72869 3.44287 3.48637 3.74589 3.81538 3.86518 3.90948 3.93525 4.02403 4.14919 4.15919 4.20271 4.28754 4.38374 4.45288 4.45667 4.48973 4.56764 4.63819 4.65468 4.70291 4.70765 4.78730 4.82471 4.91051 5.02488 5.09041 5.18579 5.25427 5.31934 5.33223 5.39258 5.53048 5.63974 5.70886 5.79461 6.02000 6.36586 6.46496 6.53086 7.21449 7.44174 8.21034 8.44674 9.37823 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002537 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.041985 B =11035.276300 C =12134.047227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.132 3.868 5 N -0.356 5.356 6 C 0.136 3.864 7 C -0.304 4.304 8 C 0.594 3.406 9 O -0.588 6.588 10 N -0.594 5.594 11 C 0.117 3.883 12 C -0.141 4.141 13 C 0.172 3.828 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.224 4.224 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.962 3.038 21 H -0.291 1.291 22 H -0.303 1.303 23 H -0.272 1.272 24 C -0.097 4.097 25 H 0.087 0.913 26 C -0.132 4.132 27 C 0.125 3.875 28 C 0.081 3.919 29 N -0.314 5.314 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.215 0.785 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 -22.664 5.533 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.022 4.022 4 C 0.012 3.988 5 N -0.136 5.136 6 C -0.015 4.015 7 C -0.319 4.319 8 C 0.384 3.616 9 O -0.470 6.470 10 N -0.324 5.324 11 C -0.005 4.005 12 C -0.181 4.181 13 C 0.063 3.937 14 H 0.065 0.935 15 N -0.365 5.365 16 C -0.356 4.356 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.793 3.207 21 H -0.219 1.219 22 H -0.230 1.230 23 H -0.197 1.197 24 C -0.117 4.117 25 H 0.105 0.895 26 C -0.189 4.189 27 C 0.002 3.998 28 C -0.106 4.106 29 N -0.134 5.134 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.232 0.768 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.207 0.793 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.004 -23.446 5.148 26.406 hybrid contribution 0.377 2.008 -0.345 2.072 sum -10.627 -21.438 4.803 24.405 Atomic orbital electron populations 1.22968 0.78780 1.04299 1.00852 1.87746 1.21913 1.26881 1.95665 1.22557 0.92887 0.85278 1.01504 1.21743 0.92277 0.77356 1.07457 1.48472 1.32614 1.12390 1.20133 1.23238 0.90395 0.93599 0.94297 1.20130 1.10652 0.97416 1.03735 1.17596 0.79345 0.78915 0.85736 1.90714 1.72071 1.69316 1.14915 1.47951 1.33594 1.43241 1.07604 1.21767 0.98775 1.02013 0.77968 1.22305 0.95758 0.99406 1.00681 1.20444 0.95878 0.84777 0.92560 0.93509 1.42583 1.63374 1.11240 1.19273 1.19555 1.25059 0.95759 0.95212 0.90762 1.25371 1.02183 0.97859 1.01201 1.69804 1.44341 1.10170 1.37619 0.85295 0.77959 0.76907 0.80525 1.21881 1.23029 1.19747 1.21618 0.94129 1.00451 0.95490 0.89485 1.21604 0.98200 0.98879 1.00261 1.21508 0.87477 0.93434 0.97350 1.24270 0.93522 0.98321 0.94438 1.77145 1.24574 0.97235 1.14418 0.87637 0.93211 0.93456 0.92698 0.92702 0.87599 0.84503 0.76820 0.88112 0.92765 0.91694 0.91002 0.79254 0.94455 0.91602 0.92211 0.94184 0.93193 0.89637 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.71 10.70 -148.98 -1.59 -7.31 16 3 C 0.06 0.76 6.11 71.98 0.44 1.20 16 4 C 0.13 1.56 6.86 86.38 0.59 2.15 16 5 N -0.36 -6.56 3.65 -346.31 -1.26 -7.82 16 6 C 0.14 2.64 11.44 84.28 0.96 3.60 16 7 C -0.30 -7.89 5.33 -20.15 -0.11 -8.00 16 8 C 0.59 19.04 7.59 86.67 0.66 19.70 16 9 O -0.59 -22.13 16.52 -4.05 -0.07 -22.20 16 10 N -0.59 -19.14 2.98 -823.60 -2.45 -21.60 16 11 C 0.12 3.68 5.42 86.22 0.47 4.14 16 12 C -0.14 -4.46 5.76 30.53 0.18 -4.29 16 13 C 0.17 6.24 2.53 45.02 0.11 6.35 16 14 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 15 N -0.72 -33.36 3.64 -322.80 -1.18 -34.54 16 16 C -0.22 -11.63 9.93 84.04 0.83 -10.80 16 17 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 19 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 20 Si 0.96 45.28 29.55 68.60 2.03 47.31 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.10 -3.06 2.67 -10.72 -0.03 -3.09 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 26 C -0.13 -4.11 9.06 71.98 0.65 -3.46 16 27 C 0.13 4.25 5.41 86.36 0.47 4.71 16 28 C 0.08 2.03 9.58 85.65 0.82 2.85 16 29 N -0.31 -7.48 12.33 -56.28 -0.69 -8.17 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.14 0.86 8.06 -2.38 -0.02 0.84 16 37 H 0.22 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.10 2.72 4.16 -2.39 -0.01 2.71 16 39 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.37 18.90 5.92 -92.70 -0.55 18.36 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 47 H 0.05 1.95 6.64 -2.39 -0.02 1.94 16 48 H 0.09 2.88 7.02 -2.39 -0.02 2.86 16 49 H 0.20 4.61 7.10 -2.91 -0.02 4.59 16 Total: -1.00 -69.35 393.97 3.23 -66.13 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.40 Total: 32.54 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.76 Total: 12.96 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.30 Total: -129.43 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.66 Total: -29.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.35 3.23 -66.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036276017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.729 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds