Wall clock time and date at job start Tue Mar 31 2020 19:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00256 * 2 1 4 4 C 1.52996 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.34254 * 125.75912 * 124.71430 * 5 4 3 7 7 C 1.38045 * 107.41902 * 179.90183 * 6 5 4 8 8 C 1.47430 * 126.41251 * 180.10468 * 7 6 5 9 9 O 1.21605 * 120.00187 * 317.36522 * 8 7 6 10 10 N 1.34781 * 119.99870 * 137.37095 * 8 7 6 11 11 C 1.46930 * 120.62794 * 183.69960 * 10 8 7 12 12 C 1.53190 * 108.77344 * 126.36842 * 11 10 8 13 13 C 1.53038 * 109.31363 * 54.63239 * 12 11 10 14 14 H 1.09005 * 109.46309 * 178.61596 * 13 12 11 15 15 N 1.46503 * 109.46261 * 58.65714 * 13 12 11 16 16 C 1.36937 * 120.00186 * 84.99722 * 15 13 12 17 17 H 1.07994 * 119.99721 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99951 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47139 * 90.00248 * 20 18 16 22 22 H 1.48510 * 109.47128 * 209.99989 * 20 18 16 23 23 H 1.48496 * 109.47182 * 329.99943 * 20 18 16 24 24 C 1.53035 * 109.53858 * 298.63428 * 13 12 11 25 25 H 1.08999 * 109.49818 * 301.41274 * 24 13 12 26 26 C 1.53009 * 109.49862 * 181.34962 * 24 13 12 27 27 C 1.46919 * 120.62866 * 3.41801 * 10 8 7 28 28 C 1.41280 * 107.17215 * 0.35768 * 7 6 5 29 29 N 1.30448 * 108.02405 * 359.78177 * 28 7 6 30 30 H 1.08999 * 109.47589 * 299.99655 * 1 2 3 31 31 H 1.09006 * 109.47036 * 59.99682 * 1 2 3 32 32 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47356 * 300.00430 * 3 2 1 34 34 H 1.09006 * 109.46933 * 59.99789 * 3 2 1 35 35 H 1.09006 * 109.47154 * 299.99693 * 4 3 2 36 36 H 1.08994 * 109.47381 * 60.00419 * 4 3 2 37 37 H 1.08006 * 126.28784 * 0.02562 * 6 5 4 38 38 H 1.08999 * 109.58141 * 246.15148 * 11 10 8 39 39 H 1.08995 * 109.58502 * 6.43488 * 11 10 8 40 40 H 1.09004 * 109.49618 * 174.58458 * 12 11 10 41 41 H 1.09000 * 109.49988 * 294.68192 * 12 11 10 42 42 H 0.97005 * 119.99750 * 265.00228 * 15 13 12 43 43 H 0.97002 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.46892 * 60.00043 * 26 24 13 45 45 H 1.08996 * 109.46678 * 180.02562 * 26 24 13 46 46 H 1.09000 * 109.46816 * 300.00218 * 26 24 13 47 47 H 1.08996 * 109.58928 * 353.41966 * 27 10 8 48 48 H 1.09005 * 109.58501 * 113.84775 * 27 10 8 49 49 H 1.08002 * 125.99203 * 179.79782 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0168 2.9871 0.8973 7 6 5.3257 4.2840 0.5394 8 6 6.2600 5.1857 1.2378 9 8 6.2571 5.2421 2.4525 10 7 7.1172 5.9476 0.5298 11 6 8.1088 6.7902 1.2122 12 6 9.4987 6.4639 0.6570 13 6 9.4845 6.6176 -0.8656 14 1 10.4789 6.4098 -1.2609 15 7 9.0973 7.9868 -1.2144 16 6 10.0427 8.9765 -1.2546 17 1 11.0739 8.7477 -1.0296 18 6 9.6756 10.2739 -1.5846 19 7 8.4188 10.5528 -1.8583 20 14 10.9653 11.6243 -1.6388 21 1 11.5409 11.7044 -3.0053 22 1 10.3365 12.9236 -1.2895 23 1 12.0434 11.3184 -0.6646 24 6 8.4799 5.6339 -1.4699 25 1 8.7535 4.6166 -1.1902 26 6 8.4908 5.7648 -2.9944 27 6 7.0820 5.9465 -0.9389 28 6 4.5743 4.5876 -0.6179 29 7 3.8689 3.5353 -0.9286 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8574 0.6436 -0.8891 37 1 5.4159 2.4446 1.7417 38 1 7.8810 7.8408 1.0325 39 1 8.0842 6.5889 2.2831 40 1 10.2313 7.1483 1.0849 41 1 9.7628 5.4387 0.9167 42 1 8.1711 8.1922 -1.4167 43 1 8.1623 11.4595 -2.0885 44 1 9.4889 5.5417 -3.3710 45 1 7.7748 5.0644 -3.4242 46 1 8.2160 6.7820 -3.2736 47 1 6.3821 5.1871 -1.2872 48 1 6.7688 6.9271 -1.2976 49 1 4.5827 5.5263 -1.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036276019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:11 Heat of formation + Delta-G solvation = 18.379384 kcal Electronic energy + Delta-G solvation = -29650.618246 eV Core-core repulsion = 25615.368686 eV Total energy + Delta-G solvation = -4035.249561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60406 -39.61271 -38.42962 -37.52858 -34.42293 -33.96525 -32.59745 -31.69877 -30.60151 -29.72524 -28.89034 -26.79282 -26.18588 -25.06629 -24.01935 -23.51259 -22.31479 -21.44475 -20.80499 -19.61177 -18.39388 -17.58130 -17.32367 -16.78341 -16.71658 -16.08604 -15.81441 -15.47701 -15.02080 -14.85816 -14.45997 -14.34978 -14.14626 -13.89599 -13.79558 -13.41214 -13.14710 -13.11448 -12.63227 -12.50891 -12.47712 -12.16596 -12.04566 -11.84257 -11.63542 -11.37086 -11.11552 -11.07097 -10.88244 -10.72285 -10.48594 -10.27205 -10.24160 -10.20604 -9.90951 -9.71324 -9.62639 -9.43791 -8.90808 -8.75447 -8.11901 -6.94710 -5.77131 -3.04888 1.46690 1.96003 2.19112 3.18741 3.29633 3.43456 3.49507 3.50561 3.52366 4.16466 4.40492 4.59381 4.59972 4.62600 4.74798 4.85304 4.86205 4.99876 5.07418 5.16335 5.17181 5.19642 5.31204 5.39326 5.43856 5.57425 5.64739 5.68469 5.82086 5.87585 5.94292 6.00912 6.14249 6.25949 6.26659 6.40319 6.47654 6.48346 6.55166 6.63157 6.68110 6.76768 6.83423 6.96526 7.07172 7.37588 7.71201 7.81766 8.41710 8.51050 9.53399 10.10074 10.45212 11.45388 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002338 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.547977 B =11975.260988 C =12263.297177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.137 3.863 5 N -0.365 5.365 6 C 0.116 3.884 7 C -0.275 4.275 8 C 0.591 3.409 9 O -0.556 6.556 10 N -0.593 5.593 11 C 0.121 3.879 12 C -0.148 4.148 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.108 4.108 25 H 0.065 0.935 26 C -0.137 4.137 27 C 0.106 3.894 28 C 0.084 3.916 29 N -0.297 5.297 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.185 0.815 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 -20.883 2.405 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.146 5.146 6 C -0.033 4.033 7 C -0.290 4.290 8 C 0.378 3.622 9 O -0.435 6.435 10 N -0.324 5.324 11 C 0.000 4.000 12 C -0.189 4.189 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.360 5.360 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.128 4.128 25 H 0.083 0.917 26 C -0.195 4.195 27 C -0.017 4.017 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.202 0.798 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.481 -21.539 2.219 24.993 hybrid contribution 0.822 1.530 0.405 1.783 sum -11.659 -20.009 2.624 23.306 Atomic orbital electron populations 1.22783 0.79918 1.03095 1.00449 1.87770 1.20610 1.26963 1.95624 1.22668 0.92540 0.85315 1.02206 1.21440 0.92659 0.78819 1.05566 1.48244 1.33484 1.11911 1.20956 1.22830 0.91690 0.94505 0.94306 1.20301 1.09639 0.96493 1.02593 1.17272 0.79596 0.79154 0.86139 1.90742 1.71015 1.68220 1.13564 1.47939 1.33961 1.43414 1.07060 1.21565 0.87132 0.94877 0.96464 1.22516 0.96303 0.99861 1.00261 1.20222 0.95753 0.86005 0.91219 0.93225 1.42452 1.08814 1.02355 1.82408 1.19213 0.90260 0.88189 1.39000 0.91284 1.24692 0.96121 0.97381 1.02651 1.69640 1.15102 1.19561 1.53796 0.86235 0.80674 0.81969 0.77557 1.21899 1.21923 1.20876 1.21616 0.95603 0.99342 0.96253 0.91706 1.21674 1.01084 1.02688 0.94078 1.21985 0.98090 1.02613 0.79033 1.24216 0.93519 0.97984 0.94588 1.77165 1.24167 0.96757 1.13570 0.93783 0.93656 0.89175 0.91380 0.92545 0.87462 0.88386 0.79821 0.90022 0.90383 0.90836 0.93468 0.78144 0.93578 0.92820 0.93896 0.90959 0.89822 0.90390 0.78830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.46 16 3 C 0.05 0.38 6.11 37.16 0.23 0.61 16 4 C 0.14 0.98 6.86 -4.04 -0.03 0.95 16 5 N -0.36 -3.72 3.65 -60.81 -0.22 -3.94 16 6 C 0.12 1.27 11.44 -16.56 -0.19 1.08 16 7 C -0.28 -3.71 5.33 -105.07 -0.56 -4.27 16 8 C 0.59 9.75 7.59 -12.52 -0.09 9.66 16 9 O -0.56 -10.85 16.52 5.27 0.09 -10.76 16 10 N -0.59 -9.72 2.98 -174.30 -0.52 -10.24 16 11 C 0.12 2.18 6.17 -3.71 -0.02 2.16 16 12 C -0.15 -2.60 5.78 -26.61 -0.15 -2.75 16 13 C 0.18 3.31 2.53 -67.89 -0.17 3.13 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 N -0.72 -16.34 3.64 -53.39 -0.19 -16.53 16 16 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 20 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.11 -1.67 2.65 -90.72 -0.24 -1.91 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.14 -2.07 9.06 37.16 0.34 -1.73 16 27 C 0.11 1.59 4.66 -3.94 -0.02 1.57 16 28 C 0.08 1.05 9.57 -16.98 -0.16 0.88 16 29 N -0.30 -3.62 12.33 30.86 0.38 -3.23 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.53 8.06 -51.93 -0.42 0.12 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.08 1.68 7.74 -51.93 -0.40 1.28 16 39 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.38 9.25 5.94 -40.82 -0.24 9.01 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.27 7.54 -51.93 -0.39 0.88 16 47 H 0.08 1.09 4.16 -51.93 -0.22 0.87 16 48 H 0.08 1.30 6.64 -51.93 -0.34 0.96 16 49 H 0.20 2.14 7.10 -52.49 -0.37 1.76 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -32.23 393.98 -7.21 -39.44 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.79 Total: 8.18 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.21 Total: 3.95 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.17 Total: -60.16 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.29 Total: -14.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.23 -7.21 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036276019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds