Wall clock time and date at job start Tue Mar 31 2020 19:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00256 * 2 1 4 4 C 1.52996 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.34254 * 125.75912 * 124.71430 * 5 4 3 7 7 C 1.38045 * 107.41902 * 179.90183 * 6 5 4 8 8 C 1.47430 * 126.41251 * 180.10468 * 7 6 5 9 9 O 1.21605 * 120.00187 * 317.36522 * 8 7 6 10 10 N 1.34781 * 119.99870 * 137.37095 * 8 7 6 11 11 C 1.46930 * 120.62794 * 183.69960 * 10 8 7 12 12 C 1.53190 * 108.77344 * 126.36842 * 11 10 8 13 13 C 1.53038 * 109.31363 * 54.63239 * 12 11 10 14 14 H 1.09005 * 109.46309 * 178.61596 * 13 12 11 15 15 N 1.46503 * 109.46261 * 58.65714 * 13 12 11 16 16 C 1.36937 * 120.00186 * 84.99722 * 15 13 12 17 17 H 1.07994 * 119.99721 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99951 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47139 * 90.00248 * 20 18 16 22 22 H 1.48510 * 109.47128 * 209.99989 * 20 18 16 23 23 H 1.48496 * 109.47182 * 329.99943 * 20 18 16 24 24 C 1.53035 * 109.53858 * 298.63428 * 13 12 11 25 25 H 1.08999 * 109.49818 * 301.41274 * 24 13 12 26 26 C 1.53009 * 109.49862 * 181.34962 * 24 13 12 27 27 C 1.46919 * 120.62866 * 3.41801 * 10 8 7 28 28 C 1.41280 * 107.17215 * 0.35768 * 7 6 5 29 29 N 1.30448 * 108.02405 * 359.78177 * 28 7 6 30 30 H 1.08999 * 109.47589 * 299.99655 * 1 2 3 31 31 H 1.09006 * 109.47036 * 59.99682 * 1 2 3 32 32 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47356 * 300.00430 * 3 2 1 34 34 H 1.09006 * 109.46933 * 59.99789 * 3 2 1 35 35 H 1.09006 * 109.47154 * 299.99693 * 4 3 2 36 36 H 1.08994 * 109.47381 * 60.00419 * 4 3 2 37 37 H 1.08006 * 126.28784 * 0.02562 * 6 5 4 38 38 H 1.08999 * 109.58141 * 246.15148 * 11 10 8 39 39 H 1.08995 * 109.58502 * 6.43488 * 11 10 8 40 40 H 1.09004 * 109.49618 * 174.58458 * 12 11 10 41 41 H 1.09000 * 109.49988 * 294.68192 * 12 11 10 42 42 H 0.97005 * 119.99750 * 265.00228 * 15 13 12 43 43 H 0.97002 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.46892 * 60.00043 * 26 24 13 45 45 H 1.08996 * 109.46678 * 180.02562 * 26 24 13 46 46 H 1.09000 * 109.46816 * 300.00218 * 26 24 13 47 47 H 1.08996 * 109.58928 * 353.41966 * 27 10 8 48 48 H 1.09005 * 109.58501 * 113.84775 * 27 10 8 49 49 H 1.08002 * 125.99203 * 179.79782 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0168 2.9871 0.8973 7 6 5.3257 4.2840 0.5394 8 6 6.2600 5.1857 1.2378 9 8 6.2571 5.2421 2.4525 10 7 7.1172 5.9476 0.5298 11 6 8.1088 6.7902 1.2122 12 6 9.4987 6.4639 0.6570 13 6 9.4845 6.6176 -0.8656 14 1 10.4789 6.4098 -1.2609 15 7 9.0973 7.9868 -1.2144 16 6 10.0427 8.9765 -1.2546 17 1 11.0739 8.7477 -1.0296 18 6 9.6756 10.2739 -1.5846 19 7 8.4188 10.5528 -1.8583 20 14 10.9653 11.6243 -1.6388 21 1 11.5409 11.7044 -3.0053 22 1 10.3365 12.9236 -1.2895 23 1 12.0434 11.3184 -0.6646 24 6 8.4799 5.6339 -1.4699 25 1 8.7535 4.6166 -1.1902 26 6 8.4908 5.7648 -2.9944 27 6 7.0820 5.9465 -0.9389 28 6 4.5743 4.5876 -0.6179 29 7 3.8689 3.5353 -0.9286 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8574 0.6436 -0.8891 37 1 5.4159 2.4446 1.7417 38 1 7.8810 7.8408 1.0325 39 1 8.0842 6.5889 2.2831 40 1 10.2313 7.1483 1.0849 41 1 9.7628 5.4387 0.9167 42 1 8.1711 8.1922 -1.4167 43 1 8.1623 11.4595 -2.0885 44 1 9.4889 5.5417 -3.3710 45 1 7.7748 5.0644 -3.4242 46 1 8.2160 6.7820 -3.2736 47 1 6.3821 5.1871 -1.2872 48 1 6.7688 6.9271 -1.2976 49 1 4.5827 5.5263 -1.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036276019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:10 Heat of formation + Delta-G solvation = -2.595523 kcal Electronic energy + Delta-G solvation = -29651.527787 eV Core-core repulsion = 25615.368686 eV Total energy + Delta-G solvation = -4036.159101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53851 -40.91049 -39.04790 -38.88229 -35.84256 -34.97447 -34.17354 -33.18257 -31.57948 -31.09925 -30.03391 -27.57079 -27.25934 -26.50997 -25.42173 -24.62670 -23.49881 -22.63298 -21.70573 -20.82257 -19.72172 -19.23233 -18.55662 -17.63043 -17.41876 -17.13669 -16.65473 -16.52844 -16.41090 -16.03388 -15.82617 -15.57868 -15.47148 -15.08965 -14.82126 -14.70928 -14.32623 -14.28589 -14.19230 -13.69197 -13.47726 -13.10566 -12.99143 -12.88218 -12.83437 -12.69705 -12.61440 -12.37129 -12.32380 -12.11111 -11.99860 -11.90592 -11.76688 -11.53362 -11.22526 -10.86320 -10.80587 -10.77459 -10.55084 -9.78212 -9.46067 -8.88476 -7.86472 -5.11569 0.58127 1.14801 1.22590 1.50349 1.51004 1.58504 1.97792 2.28147 2.61561 2.73838 3.44340 3.47898 3.76703 3.82141 3.86026 3.87910 3.94633 3.98886 4.15376 4.21245 4.23778 4.30107 4.36753 4.46131 4.48508 4.49536 4.55653 4.64508 4.65293 4.67309 4.71736 4.78108 4.83273 4.91192 5.02649 5.14393 5.19272 5.21752 5.30975 5.34500 5.39595 5.55705 5.63755 5.70293 5.79716 6.02916 6.36087 6.47380 6.53810 7.21530 7.43784 8.20632 8.44433 9.36625 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002338 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.547977 B =11975.260988 C =12263.297177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.055 3.945 4 C 0.132 3.868 5 N -0.356 5.356 6 C 0.135 3.865 7 C -0.304 4.304 8 C 0.593 3.407 9 O -0.591 6.591 10 N -0.594 5.594 11 C 0.129 3.871 12 C -0.138 4.138 13 C 0.172 3.828 14 H 0.047 0.953 15 N -0.723 5.723 16 C -0.226 4.226 17 H 0.073 0.927 18 C -0.074 4.074 19 N -0.966 5.966 20 Si 0.962 3.038 21 H -0.291 1.291 22 H -0.302 1.302 23 H -0.273 1.273 24 C -0.099 4.099 25 H 0.088 0.912 26 C -0.130 4.130 27 C 0.113 3.887 28 C 0.082 3.918 29 N -0.311 5.311 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.213 0.787 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.375 0.625 43 H 0.247 0.753 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.110 0.890 48 H 0.056 0.944 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -23.790 2.435 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.136 5.136 6 C -0.016 4.016 7 C -0.319 4.319 8 C 0.383 3.617 9 O -0.473 6.473 10 N -0.324 5.324 11 C 0.006 3.994 12 C -0.179 4.179 13 C 0.063 3.937 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.358 4.358 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.793 3.207 21 H -0.219 1.219 22 H -0.229 1.229 23 H -0.199 1.199 24 C -0.119 4.119 25 H 0.106 0.894 26 C -0.188 4.188 27 C -0.009 4.009 28 C -0.105 4.105 29 N -0.131 5.131 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.230 0.770 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.209 0.791 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.128 0.872 48 H 0.075 0.925 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.513 -24.503 2.232 27.604 hybrid contribution 0.767 2.275 0.434 2.439 sum -11.746 -22.229 2.666 25.282 Atomic orbital electron populations 1.22965 0.78791 1.04282 1.00858 1.87746 1.21902 1.26918 1.95667 1.22565 0.92896 0.85268 1.01524 1.21743 0.92251 0.77376 1.07460 1.48469 1.32726 1.12373 1.19988 1.23219 0.90478 0.93643 0.94248 1.20097 1.10685 0.97359 1.03736 1.17653 0.79359 0.78928 0.85750 1.90717 1.72065 1.69356 1.15150 1.47943 1.33704 1.43174 1.07545 1.21299 0.88033 0.93453 0.96596 1.22377 0.95528 1.00855 0.99118 1.20447 0.96592 0.84660 0.91967 0.93494 1.42554 1.07895 1.03642 1.82278 1.19549 0.90903 0.88857 1.36479 0.90944 1.25360 0.97683 0.99509 1.04041 1.69785 1.16708 1.19298 1.55971 0.85301 0.78769 0.79170 0.77478 1.21858 1.22938 1.19858 1.21557 0.94673 0.99307 0.96387 0.89415 1.21594 1.01977 1.01526 0.93722 1.21971 0.98510 1.02320 0.78138 1.24301 0.93430 0.98410 0.94392 1.77151 1.24357 0.97135 1.14428 0.93248 0.93404 0.87678 0.92572 0.92784 0.84643 0.87474 0.77027 0.93363 0.90659 0.92209 0.91082 0.79103 0.94413 0.92598 0.91089 0.94054 0.87210 0.92546 0.78323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.52 10.70 -148.98 -1.59 -7.11 16 3 C 0.06 0.72 6.11 71.98 0.44 1.16 16 4 C 0.13 1.47 6.86 86.38 0.59 2.06 16 5 N -0.36 -6.22 3.65 -346.30 -1.26 -7.48 16 6 C 0.14 2.55 11.44 84.28 0.96 3.51 16 7 C -0.30 -7.63 5.33 -20.15 -0.11 -7.74 16 8 C 0.59 19.07 7.59 86.66 0.66 19.73 16 9 O -0.59 -22.80 16.52 -4.05 -0.07 -22.87 16 10 N -0.59 -19.20 2.98 -823.61 -2.45 -21.65 16 11 C 0.13 4.70 6.17 86.36 0.53 5.23 16 12 C -0.14 -4.74 5.78 30.67 0.18 -4.57 16 13 C 0.17 6.26 2.53 45.02 0.11 6.38 16 14 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 15 N -0.72 -33.38 3.64 -322.82 -1.18 -34.56 16 16 C -0.23 -11.88 9.93 84.03 0.83 -11.04 16 17 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.97 -57.44 13.06 21.65 0.28 -57.16 16 20 Si 0.96 45.74 29.55 68.60 2.03 47.77 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.10 -2.90 2.65 -10.86 -0.03 -2.93 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 C -0.13 -3.71 9.06 71.99 0.65 -3.06 16 27 C 0.11 3.30 4.66 86.22 0.40 3.70 16 28 C 0.08 1.90 9.57 85.65 0.82 2.72 16 29 N -0.31 -6.93 12.33 -56.28 -0.69 -7.63 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.14 0.79 8.06 -2.38 -0.02 0.77 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.21 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.05 2.07 7.74 -2.39 -0.02 2.05 16 39 H 0.07 2.77 7.02 -2.39 -0.02 2.76 16 40 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.38 18.67 5.94 -92.70 -0.55 18.12 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 47 H 0.11 2.66 4.16 -2.39 -0.01 2.65 16 48 H 0.06 1.92 6.64 -2.38 -0.02 1.90 16 49 H 0.20 4.21 7.10 -2.91 -0.02 4.19 16 Total: -1.00 -70.34 393.98 3.23 -67.12 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.40 Total: 30.56 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 7.76 Total: 13.01 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.30 Total: -128.48 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.66 Total: -29.98 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.34 3.23 -67.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036276019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.521 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds