Wall clock time and date at job start Tue Mar 31 2020 19:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.29941 * 126.28924 * 59.68488 * 4 2 1 6 6 O 1.21298 * 110.25181 * 179.84490 * 5 4 2 7 7 C 1.33644 * 109.81254 * 0.42734 * 6 5 4 8 8 C 1.50700 * 126.55261 * 179.75871 * 7 6 5 9 9 C 1.52997 * 109.46769 * 269.97306 * 8 7 6 10 10 C 1.50700 * 109.46769 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00154 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99956 * 179.97438 * 10 9 8 13 13 C 1.47429 * 125.64675 * 179.71691 * 12 10 9 14 14 C 1.55134 * 104.71861 * 155.81950 * 13 12 10 15 15 H 1.08998 * 111.19146 * 279.18826 * 14 13 12 16 16 C 1.53000 * 110.93539 * 155.28728 * 14 13 12 17 17 C 1.55151 * 101.48950 * 37.29721 * 14 13 12 18 18 H 1.08998 * 110.87357 * 205.89807 * 17 14 13 19 19 N 1.46495 * 110.72392 * 82.69171 * 17 14 13 20 20 C 1.36941 * 120.00147 * 160.02662 * 19 17 14 21 21 H 1.08002 * 120.00027 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00076 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46892 * 60.00103 * 24 22 20 26 26 H 1.48500 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46921 * 300.00018 * 24 22 20 28 28 C 1.47023 * 125.64934 * 0.02839 * 12 10 9 29 29 N 1.31133 * 106.89204 * 359.73867 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 35 35 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 37 37 H 1.08993 * 109.47006 * 29.97294 * 8 7 6 38 38 H 1.08996 * 109.47079 * 149.97258 * 8 7 6 39 39 H 1.09000 * 109.47724 * 299.99677 * 9 8 7 40 40 H 1.08996 * 109.47359 * 60.00124 * 9 8 7 41 41 H 1.08997 * 110.36432 * 274.74102 * 13 12 10 42 42 H 1.08996 * 110.36885 * 37.07126 * 13 12 10 43 43 H 1.09003 * 109.47655 * 307.95611 * 16 14 13 44 44 H 1.08998 * 109.46924 * 67.95784 * 16 14 13 45 45 H 1.09001 * 109.47107 * 187.95104 * 16 14 13 46 46 H 0.96999 * 119.99884 * 340.02880 * 19 17 14 47 47 H 0.96998 * 119.99917 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.88023 * 300.43670 * 28 12 10 49 49 H 1.08994 * 109.88158 * 61.44646 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7903 -0.3779 -2.4632 6 8 2.3409 -1.1479 -3.2216 7 6 2.9991 -2.0783 -2.5236 8 6 3.8062 -3.2193 -3.0873 9 6 2.9019 -4.4386 -3.2773 10 6 3.7091 -5.5798 -3.8403 11 8 4.8915 -5.4325 -4.0668 12 7 3.1174 -6.7645 -4.0912 13 6 3.7837 -7.9575 -4.6447 14 6 2.9144 -9.1509 -4.1687 15 1 3.1510 -9.4255 -3.1407 16 6 3.0738 -10.3510 -5.1043 17 6 1.4863 -8.5529 -4.2699 18 1 0.8073 -9.0493 -3.5767 19 7 0.9818 -8.6450 -5.6421 20 6 -0.3638 -8.5658 -5.8837 21 1 -1.0531 -8.4359 -5.0625 22 6 -0.8419 -8.6536 -7.1839 23 7 -0.0018 -8.8125 -8.1846 24 14 -2.6775 -8.5464 -7.5134 25 1 -3.1917 -7.2399 -7.0296 26 1 -2.9264 -8.6673 -8.9724 27 1 -3.3735 -9.6472 -6.8001 28 6 1.6993 -7.0791 -3.8643 29 7 2.8087 -1.8083 -1.2546 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.2276 -2.9261 -4.0487 38 1 4.6128 -3.4690 -2.3980 39 1 2.4804 -4.7319 -2.3158 40 1 2.0953 -4.1889 -3.9665 41 1 3.8033 -7.9101 -5.7335 42 1 4.7957 -8.0445 -4.2496 43 1 2.8992 -10.0356 -6.1329 44 1 4.0837 -10.7509 -5.0134 45 1 2.3522 -11.1216 -4.8330 46 1 1.6009 -8.7621 -6.3796 47 1 -0.3359 -8.8742 -9.0932 48 1 1.4540 -6.9454 -2.8107 49 1 1.0731 -6.4297 -4.4759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054957447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:36 Heat of formation + Delta-G solvation = 31.153668 kcal Electronic energy + Delta-G solvation = -28971.655714 eV Core-core repulsion = 24936.960088 eV Total energy + Delta-G solvation = -4034.695626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.76064 -39.93861 -37.83006 -37.12992 -35.41846 -33.99574 -33.65622 -32.44906 -31.01886 -30.49314 -27.79877 -27.61564 -27.01018 -24.98481 -24.82195 -23.88766 -22.99829 -21.98881 -20.26555 -19.35430 -18.98005 -18.16134 -17.79241 -17.55805 -16.77598 -16.09061 -15.57929 -15.37384 -15.05313 -14.69403 -14.51437 -14.28567 -13.85911 -13.82384 -13.53253 -13.16671 -13.03474 -12.81951 -12.70689 -12.65220 -12.40787 -12.11853 -12.00748 -11.97874 -11.94287 -11.62353 -11.50953 -11.41103 -11.36384 -11.16412 -11.09955 -10.95551 -10.80914 -10.51141 -10.32869 -10.11773 -9.97960 -9.74653 -9.65702 -9.05270 -8.32585 -7.11672 -5.88166 -3.18536 0.95265 2.02060 2.58317 2.77620 3.21164 3.37073 3.39058 3.42256 3.43320 3.82404 4.42354 4.48899 4.57800 4.62701 4.64310 4.69731 4.83978 4.96395 5.12141 5.13521 5.19855 5.29544 5.30011 5.36373 5.38540 5.45027 5.47174 5.54223 5.59793 5.61012 5.72726 5.73722 5.77049 5.78873 5.88617 5.91149 5.91256 6.13925 6.21605 6.29983 6.32127 6.47652 6.55258 6.70232 6.88515 7.59042 7.79555 7.99597 8.29161 8.31441 9.41716 9.96048 10.30724 11.33746 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.002586 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.349820 B =10826.951765 C =12520.256569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.173 3.827 5 N -0.381 5.381 6 O 0.079 5.921 7 C 0.189 3.811 8 C -0.011 4.011 9 C -0.134 4.134 10 C 0.531 3.469 11 O -0.555 6.555 12 N -0.604 5.604 13 C 0.115 3.885 14 C -0.114 4.114 15 H 0.079 0.921 16 C -0.131 4.131 17 C 0.172 3.828 18 H 0.070 0.930 19 N -0.712 5.712 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.068 3.932 29 N -0.481 5.481 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.387 0.613 47 H 0.257 0.743 48 H 0.055 0.945 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 12.225 15.621 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.100 4.100 5 N -0.089 5.089 6 O 0.020 5.980 7 C -0.031 4.031 8 C -0.051 4.051 9 C -0.175 4.175 10 C 0.319 3.681 11 O -0.435 6.435 12 N -0.336 5.336 13 C -0.007 4.007 14 C -0.134 4.134 15 H 0.097 0.903 16 C -0.189 4.189 17 C 0.060 3.940 18 H 0.088 0.912 19 N -0.353 5.353 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.058 4.058 29 N -0.215 5.215 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.223 0.777 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.877 13.003 15.684 21.204 hybrid contribution -0.933 -0.014 -0.624 1.123 sum 4.944 12.989 15.060 20.493 Atomic orbital electron populations 1.21857 0.92787 1.02757 1.02995 1.19559 0.96483 0.95340 0.90990 1.21850 1.01432 0.94027 1.02990 1.25842 0.96611 0.92927 0.94637 1.74586 1.17270 1.14172 1.02832 1.85326 1.47414 1.29937 1.35276 1.28837 0.94553 0.93831 0.85917 1.19975 0.95276 0.85999 1.03809 1.21572 0.99244 0.92716 1.03969 1.19850 0.87325 0.82571 0.78327 1.90688 1.15898 1.82390 1.54498 1.48422 1.11620 1.11297 1.62265 1.22327 0.96177 0.83432 0.98798 1.22652 0.96322 0.94681 0.99716 0.90270 1.21549 1.00217 0.96717 1.00435 1.21200 0.92699 0.90510 0.89640 0.91188 1.42449 1.05219 1.86477 1.01160 1.19167 0.83423 1.43099 0.92270 0.91075 1.24749 0.97686 1.02308 0.95653 1.69641 1.33155 1.55995 0.98798 0.86282 0.85090 0.77885 0.76967 1.21215 1.21682 1.21188 1.23342 0.80520 1.02295 0.99613 1.71923 1.17499 1.13981 1.18102 0.91039 0.92146 0.91808 0.88054 0.91042 0.92311 0.91844 0.87029 0.86371 0.88129 0.87917 0.91090 0.91172 0.91182 0.93629 0.92090 0.77706 0.93279 0.92635 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.18 37.16 0.34 -0.78 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.05 9.17 37.16 0.34 -0.71 16 4 C 0.17 2.05 6.72 -156.38 -1.05 1.00 16 5 N -0.38 -4.96 12.16 30.90 0.38 -4.59 16 6 O 0.08 1.00 11.31 18.10 0.20 1.20 16 7 C 0.19 2.19 7.77 -13.05 -0.10 2.09 16 8 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 9 C -0.13 -1.52 4.87 -27.88 -0.14 -1.66 16 10 C 0.53 7.90 7.85 -10.98 -0.09 7.82 16 11 O -0.56 -9.63 16.24 5.56 0.09 -9.54 16 12 N -0.60 -9.35 3.33 -170.38 -0.57 -9.92 16 13 C 0.11 1.79 6.36 -2.40 -0.02 1.77 16 14 C -0.11 -1.67 3.53 -88.35 -0.31 -1.99 16 15 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.13 -1.97 8.85 37.16 0.33 -1.64 16 17 C 0.17 2.98 3.37 -66.10 -0.22 2.75 16 18 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 19 N -0.71 -15.89 4.61 -51.65 -0.24 -16.13 16 20 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.07 1.07 6.22 -3.06 -0.02 1.05 16 29 N -0.48 -6.01 11.55 -9.87 -0.11 -6.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.12 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 42 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 43 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.39 9.33 6.10 -40.82 -0.25 9.08 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -30.71 403.86 -8.23 -38.94 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.13 Total: 7.25 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.63 Total: 2.36 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.18 Total: -62.59 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.29 Total: -8.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.71 -8.23 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054957447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.089 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds