Wall clock time and date at job start Tue Mar 31 2020 19:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.29941 * 126.28924 * 59.68488 * 4 2 1 6 6 O 1.21298 * 110.25181 * 179.84490 * 5 4 2 7 7 C 1.33644 * 109.81254 * 0.42734 * 6 5 4 8 8 C 1.50700 * 126.55261 * 179.75871 * 7 6 5 9 9 C 1.52997 * 109.46769 * 269.97306 * 8 7 6 10 10 C 1.50700 * 109.46769 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00154 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99956 * 179.97438 * 10 9 8 13 13 C 1.47429 * 125.64675 * 179.71691 * 12 10 9 14 14 C 1.55134 * 104.71861 * 155.81950 * 13 12 10 15 15 H 1.08998 * 111.19146 * 279.18826 * 14 13 12 16 16 C 1.53000 * 110.93539 * 155.28728 * 14 13 12 17 17 C 1.55151 * 101.48950 * 37.29721 * 14 13 12 18 18 H 1.08998 * 110.87357 * 205.89807 * 17 14 13 19 19 N 1.46495 * 110.72392 * 82.69171 * 17 14 13 20 20 C 1.36941 * 120.00147 * 160.02662 * 19 17 14 21 21 H 1.08002 * 120.00027 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00076 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46892 * 60.00103 * 24 22 20 26 26 H 1.48500 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46921 * 300.00018 * 24 22 20 28 28 C 1.47023 * 125.64934 * 0.02839 * 12 10 9 29 29 N 1.31133 * 106.89204 * 359.73867 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 35 35 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 37 37 H 1.08993 * 109.47006 * 29.97294 * 8 7 6 38 38 H 1.08996 * 109.47079 * 149.97258 * 8 7 6 39 39 H 1.09000 * 109.47724 * 299.99677 * 9 8 7 40 40 H 1.08996 * 109.47359 * 60.00124 * 9 8 7 41 41 H 1.08997 * 110.36432 * 274.74102 * 13 12 10 42 42 H 1.08996 * 110.36885 * 37.07126 * 13 12 10 43 43 H 1.09003 * 109.47655 * 307.95611 * 16 14 13 44 44 H 1.08998 * 109.46924 * 67.95784 * 16 14 13 45 45 H 1.09001 * 109.47107 * 187.95104 * 16 14 13 46 46 H 0.96999 * 119.99884 * 340.02880 * 19 17 14 47 47 H 0.96998 * 119.99917 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.88023 * 300.43670 * 28 12 10 49 49 H 1.08994 * 109.88158 * 61.44646 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7903 -0.3779 -2.4632 6 8 2.3409 -1.1479 -3.2216 7 6 2.9991 -2.0783 -2.5236 8 6 3.8062 -3.2193 -3.0873 9 6 2.9019 -4.4386 -3.2773 10 6 3.7091 -5.5798 -3.8403 11 8 4.8915 -5.4325 -4.0668 12 7 3.1174 -6.7645 -4.0912 13 6 3.7837 -7.9575 -4.6447 14 6 2.9144 -9.1509 -4.1687 15 1 3.1510 -9.4255 -3.1407 16 6 3.0738 -10.3510 -5.1043 17 6 1.4863 -8.5529 -4.2699 18 1 0.8073 -9.0493 -3.5767 19 7 0.9818 -8.6450 -5.6421 20 6 -0.3638 -8.5658 -5.8837 21 1 -1.0531 -8.4359 -5.0625 22 6 -0.8419 -8.6536 -7.1839 23 7 -0.0018 -8.8125 -8.1846 24 14 -2.6775 -8.5464 -7.5134 25 1 -3.1917 -7.2399 -7.0296 26 1 -2.9264 -8.6673 -8.9724 27 1 -3.3735 -9.6472 -6.8001 28 6 1.6993 -7.0791 -3.8643 29 7 2.8087 -1.8083 -1.2546 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.2276 -2.9261 -4.0487 38 1 4.6128 -3.4690 -2.3980 39 1 2.4804 -4.7319 -2.3158 40 1 2.0953 -4.1889 -3.9665 41 1 3.8033 -7.9101 -5.7335 42 1 4.7957 -8.0445 -4.2496 43 1 2.8992 -10.0356 -6.1329 44 1 4.0837 -10.7509 -5.0134 45 1 2.3522 -11.1216 -4.8330 46 1 1.6009 -8.7621 -6.3796 47 1 -0.3359 -8.8742 -9.0932 48 1 1.4540 -6.9454 -2.8107 49 1 1.0731 -6.4297 -4.4759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054957447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:35 Heat of formation + Delta-G solvation = 11.596656 kcal Electronic energy + Delta-G solvation = -28972.503770 eV Core-core repulsion = 24936.960088 eV Total energy + Delta-G solvation = -4035.543682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.68645 -41.18225 -39.13444 -37.91522 -36.31765 -35.67236 -34.54015 -33.86109 -32.28826 -31.85611 -29.29794 -28.18556 -28.14605 -26.08957 -25.69238 -25.65653 -23.95641 -23.24848 -21.05273 -20.68656 -20.16643 -19.40943 -19.09265 -18.66670 -17.98686 -17.35265 -16.82430 -16.33533 -16.15080 -16.02958 -15.62206 -15.52442 -15.12809 -14.81698 -14.46525 -14.45798 -14.38628 -14.01958 -13.74762 -13.52397 -13.32603 -13.24375 -13.23011 -13.03835 -12.84849 -12.74718 -12.69053 -12.65249 -12.32053 -12.30485 -12.25521 -12.17155 -12.12896 -11.95336 -11.87631 -11.43428 -11.34651 -11.12092 -10.94990 -10.81466 -9.61356 -8.98526 -7.90719 -5.18384 0.03169 1.12180 1.50909 1.51784 1.57635 1.58931 1.66191 2.10931 2.53291 2.58816 2.98858 3.40515 3.41501 3.66652 3.76694 3.90000 3.91749 3.94321 3.97357 4.02134 4.03521 4.13063 4.26887 4.45116 4.46853 4.59667 4.66439 4.67075 4.67371 4.69128 4.74505 4.79586 4.81821 4.88540 4.91638 4.92170 5.00968 5.02787 5.04248 5.20355 5.23902 5.26363 5.29088 5.36614 5.56067 5.62236 6.30996 6.57617 7.08130 7.10495 7.38776 8.14138 8.36150 9.32292 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.002586 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.349820 B =10826.951765 C =12520.256569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.172 3.828 5 N -0.401 5.401 6 O 0.066 5.934 7 C 0.195 3.805 8 C -0.004 4.004 9 C -0.124 4.124 10 C 0.529 3.471 11 O -0.581 6.581 12 N -0.608 5.608 13 C 0.115 3.885 14 C -0.099 4.099 15 H 0.111 0.889 16 C -0.126 4.126 17 C 0.160 3.840 18 H 0.080 0.920 19 N -0.723 5.723 20 C -0.234 4.234 21 H 0.082 0.918 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.965 3.035 25 H -0.280 1.280 26 H -0.303 1.303 27 H -0.278 1.278 28 C 0.080 3.920 29 N -0.496 5.496 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.375 0.625 47 H 0.248 0.752 48 H 0.091 0.909 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 12.716 18.521 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.102 4.102 5 N -0.111 5.111 6 O 0.011 5.989 7 C -0.025 4.025 8 C -0.043 4.043 9 C -0.165 4.165 10 C 0.319 3.681 11 O -0.462 6.462 12 N -0.340 5.340 13 C -0.008 4.008 14 C -0.118 4.118 15 H 0.129 0.871 16 C -0.184 4.184 17 C 0.050 3.950 18 H 0.098 0.902 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.100 0.900 22 C -0.265 4.265 23 N -0.619 5.619 24 Si 0.795 3.205 25 H -0.206 1.206 26 H -0.230 1.230 27 H -0.204 1.204 28 C -0.046 4.046 29 N -0.230 5.230 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.209 0.791 47 H 0.057 0.943 48 H 0.109 0.891 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.638 13.494 18.637 23.690 hybrid contribution -0.780 -0.169 -1.428 1.636 sum 4.858 13.326 17.209 22.300 Atomic orbital electron populations 1.21839 0.92029 1.02411 1.03666 1.19808 0.97068 0.95898 0.89955 1.21830 1.01092 0.93194 1.03686 1.26488 0.95775 0.92607 0.95284 1.74588 1.18252 1.14865 1.03416 1.85303 1.47791 1.30285 1.35562 1.29010 0.94010 0.93665 0.85799 1.19961 0.94937 0.85169 1.04219 1.21521 0.98817 0.91630 1.04533 1.20382 0.87213 0.82839 0.77646 1.90678 1.17220 1.82750 1.55576 1.48515 1.11530 1.11640 1.62316 1.22277 0.97026 0.84050 0.97443 1.22616 0.94097 0.93926 1.01203 0.87096 1.21478 1.01647 0.96744 0.98538 1.21494 0.94357 0.92010 0.87176 0.90176 1.42611 1.04133 1.86564 1.03035 1.19587 0.84988 1.39767 0.92231 0.90017 1.25455 1.01130 1.04007 0.95931 1.69800 1.34561 1.58897 0.98650 0.85335 0.81146 0.78078 0.75916 1.20638 1.23015 1.20398 1.23097 0.80240 1.00105 1.01152 1.71946 1.18079 1.14514 1.18412 0.88493 0.92969 0.92995 0.86951 0.88512 0.92793 0.92956 0.86561 0.85729 0.86455 0.87646 0.93653 0.90156 0.94427 0.91050 0.92530 0.79099 0.94302 0.89136 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.18 71.98 0.66 -1.27 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -1.78 9.17 71.98 0.66 -1.12 16 4 C 0.17 3.89 6.72 138.47 0.93 4.82 16 5 N -0.40 -10.26 12.16 -60.33 -0.73 -11.00 16 6 O 0.07 1.65 11.31 74.83 0.85 2.49 16 7 C 0.20 4.32 7.77 88.38 0.69 5.00 16 8 C 0.00 -0.07 5.13 29.85 0.15 0.08 16 9 C -0.12 -2.59 4.87 29.85 0.15 -2.44 16 10 C 0.53 14.93 7.85 87.66 0.69 15.62 16 11 O -0.58 -19.51 16.24 -3.02 -0.05 -19.56 16 12 N -0.61 -17.85 3.33 -811.33 -2.70 -20.55 16 13 C 0.11 3.43 6.36 86.93 0.55 3.99 16 14 C -0.10 -2.71 3.53 -9.33 -0.03 -2.74 16 15 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.13 -3.66 8.85 71.98 0.64 -3.02 16 17 C 0.16 5.26 3.37 46.18 0.16 5.41 16 18 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 19 N -0.72 -32.27 4.61 -317.33 -1.46 -33.73 16 20 C -0.23 -11.78 9.98 84.03 0.84 -10.94 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 23 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 24 Si 0.97 44.23 29.55 68.60 2.03 46.25 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 28 C 0.08 2.31 6.22 86.73 0.54 2.85 16 29 N -0.50 -11.71 11.55 -303.21 -3.50 -15.21 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 2.13 8.10 -2.39 -0.02 2.11 16 38 H 0.12 2.27 8.10 -2.39 -0.02 2.25 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.59 7.99 -2.39 -0.02 1.57 16 42 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 43 H 0.04 1.34 6.38 -2.39 -0.02 1.32 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.38 18.57 6.10 -92.71 -0.57 18.00 16 47 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 48 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 Total: -1.00 -67.03 403.86 2.13 -64.90 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.38 Total: 30.51 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.04 Total: 12.61 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -8.11 Total: -137.21 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.80 Total: -17.07 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.03 2.13 -64.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054957447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.497 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds