Wall clock time and date at job start Tue Mar 31 2020 19:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 C 1.50703 * 109.47201 * 120.00235 * 2 1 3 5 5 N 1.29947 * 126.28207 * 299.97501 * 4 2 1 6 6 O 1.21309 * 110.24388 * 179.73002 * 5 4 2 7 7 C 1.33642 * 109.81127 * 0.46706 * 6 5 4 8 8 C 1.50696 * 126.55022 * 179.80826 * 7 6 5 9 9 C 1.52999 * 109.46851 * 269.68467 * 8 7 6 10 10 C 1.50698 * 109.47485 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99554 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00652 * 179.97438 * 10 9 8 13 13 C 1.47323 * 125.61271 * 0.13733 * 12 10 9 14 14 C 1.54322 * 107.12002 * 181.18523 * 13 12 10 15 15 H 1.09006 * 110.71995 * 263.52250 * 14 13 12 16 16 N 1.46496 * 110.72214 * 140.43180 * 14 13 12 17 17 C 1.36934 * 120.00548 * 88.83821 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.55158 * 103.10222 * 21.97354 * 14 13 12 26 26 H 1.09006 * 110.99798 * 82.70173 * 25 14 13 27 27 C 1.53002 * 111.00420 * 206.50966 * 25 14 13 28 28 C 1.47419 * 125.65254 * 180.02562 * 12 10 9 29 29 N 1.31130 * 106.89748 * 359.54129 * 7 6 5 30 30 H 1.08998 * 109.47128 * 59.99498 * 1 2 3 31 31 H 1.08994 * 109.46853 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47062 * 299.99975 * 1 2 3 33 33 H 1.09000 * 109.47318 * 240.00417 * 2 1 3 34 34 H 1.09004 * 109.46924 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47654 * 300.00180 * 3 2 1 36 36 H 1.09009 * 109.47080 * 60.00128 * 3 2 1 37 37 H 1.08996 * 109.47565 * 149.68663 * 8 7 6 38 38 H 1.09001 * 109.47254 * 29.68205 * 8 7 6 39 39 H 1.09007 * 109.47233 * 60.00120 * 9 8 7 40 40 H 1.08995 * 109.47636 * 300.00115 * 9 8 7 41 41 H 1.09002 * 110.06315 * 61.75417 * 13 12 10 42 42 H 1.08995 * 109.85090 * 300.49793 * 13 12 10 43 43 H 0.96999 * 119.99694 * 268.84346 * 16 14 13 44 44 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.46623 * 60.00930 * 27 25 14 46 46 H 1.08994 * 109.47147 * 180.02562 * 27 25 14 47 47 H 1.08994 * 109.47331 * 300.00698 * 27 25 14 48 48 H 1.09006 * 110.36928 * 36.99373 * 28 12 10 49 49 H 1.08995 * 110.37071 * 274.67366 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7953 -0.3744 2.4631 6 8 2.3374 -1.1506 3.2215 7 6 3.0000 -2.0778 2.5234 8 6 3.8070 -3.2189 3.0869 9 6 5.2580 -2.7723 3.2771 10 6 6.0650 -3.9131 3.8412 11 8 5.5322 -4.9787 4.0682 12 7 7.3790 -3.7496 4.0923 13 6 8.1484 -2.5138 3.8661 14 6 9.6090 -2.8080 4.2683 15 1 9.8026 -2.4755 5.2882 16 7 10.5418 -2.1747 3.3329 17 6 10.9708 -0.8935 3.5556 18 1 10.6217 -0.3501 4.4212 19 6 11.8542 -0.2934 2.6690 20 7 12.2669 0.9380 2.8833 21 14 12.4585 -1.2337 1.1723 22 1 13.6984 -1.9733 1.5198 23 1 11.4140 -2.1954 0.7370 24 1 12.7433 -0.2799 0.0703 25 6 9.6966 -4.3539 4.1690 26 1 9.8765 -4.6697 3.1413 27 6 10.7749 -4.9034 5.1051 28 6 8.2832 -4.7766 4.6408 29 7 2.8088 -1.8083 1.2544 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.7740 -4.0626 2.3976 38 1 3.3902 -3.5188 4.0484 39 1 5.2910 -1.9286 3.9665 40 1 5.6748 -2.4723 2.3157 41 1 7.7498 -1.7072 4.4814 42 1 8.1025 -2.2368 2.8130 43 1 10.8555 -2.6630 2.5557 44 1 12.8845 1.3572 2.2639 45 1 10.5356 -4.6323 6.1334 46 1 10.8153 -5.9889 5.0152 47 1 11.7419 -4.4803 4.8334 48 1 8.0281 -5.7587 4.2423 49 1 8.2334 -4.7836 5.7296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054957448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:43 Heat of formation + Delta-G solvation = 31.583005 kcal Electronic energy + Delta-G solvation = -28857.996603 eV Core-core repulsion = 24823.319594 eV Total energy + Delta-G solvation = -4034.677009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.77646 -40.06507 -37.91303 -37.12514 -35.45387 -34.27627 -33.69975 -32.62957 -31.20610 -30.93657 -28.01464 -27.58596 -27.17460 -25.11837 -24.82976 -23.83351 -22.94758 -21.40613 -20.31165 -20.22477 -19.14724 -18.19823 -17.81310 -17.63056 -16.99488 -16.35624 -15.69489 -15.37951 -15.23234 -14.84567 -14.39740 -14.34346 -13.82325 -13.80347 -13.47280 -13.33626 -13.26619 -12.82060 -12.79282 -12.63368 -12.62275 -12.37596 -12.26371 -12.02095 -11.93104 -11.76527 -11.52819 -11.50525 -11.45566 -11.38223 -11.18977 -11.10200 -10.87707 -10.71411 -10.43570 -10.15202 -10.08494 -9.83419 -9.70596 -9.09774 -8.51204 -7.47225 -5.90595 -3.29085 0.93246 2.01575 2.53976 2.62960 3.07591 3.28171 3.31028 3.34932 3.37824 3.81240 4.35896 4.46665 4.53980 4.57319 4.65073 4.66112 4.77253 4.88161 4.96623 4.97953 5.05885 5.22761 5.23531 5.36695 5.37613 5.41474 5.45810 5.46501 5.49648 5.60120 5.61778 5.63168 5.68029 5.71450 5.76682 5.79563 5.81656 5.92763 6.00926 6.05792 6.20674 6.28271 6.36882 6.42627 6.67406 7.59808 7.83055 7.98186 8.15212 8.27938 9.04198 9.76472 9.94216 11.26913 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.002762 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.291996 B =10134.489242 C =12301.854707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.175 3.825 5 N -0.381 5.381 6 O 0.078 5.922 7 C 0.186 3.814 8 C -0.010 4.010 9 C -0.136 4.136 10 C 0.533 3.467 11 O -0.553 6.553 12 N -0.612 5.612 13 C 0.070 3.930 14 C 0.182 3.818 15 H 0.077 0.923 16 N -0.736 5.736 17 C -0.254 4.254 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.928 5.928 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.290 1.290 25 C -0.118 4.118 26 H 0.081 0.919 27 C -0.135 4.135 28 C 0.115 3.885 29 N -0.479 5.479 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 -7.150 -1.341 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.098 4.098 5 N -0.089 5.089 6 O 0.019 5.981 7 C -0.034 4.034 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.321 3.679 11 O -0.433 6.433 12 N -0.345 5.345 13 C -0.055 4.055 14 C 0.070 3.930 15 H 0.095 0.905 16 N -0.377 5.377 17 C -0.384 4.384 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.203 1.203 24 H -0.216 1.216 25 C -0.138 4.138 26 H 0.100 0.900 27 C -0.193 4.193 28 C -0.008 4.008 29 N -0.213 5.213 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.518 -6.805 -1.364 20.715 hybrid contribution 0.642 -0.443 -1.109 1.356 sum -18.876 -7.248 -2.473 20.370 Atomic orbital electron populations 1.21846 0.92915 1.02493 1.02996 1.19576 0.96343 0.95544 0.91005 1.21862 1.01795 0.93796 1.02989 1.25851 0.96638 0.92677 0.94637 1.74585 1.17839 1.13568 1.02860 1.85311 1.47696 1.29751 1.35321 1.28799 0.94643 0.93988 0.85981 1.19955 0.91058 0.90208 1.03733 1.21592 0.93251 0.98524 1.04305 1.19913 0.81008 0.88921 0.78048 1.90694 1.70142 1.28186 1.54231 1.48586 1.07717 1.15297 1.62903 1.23380 0.94813 0.85336 1.01993 1.21220 0.86978 0.89773 0.95022 0.90507 1.42715 1.52563 1.15048 1.27368 1.19053 1.22087 0.88413 1.08822 0.88980 1.24680 0.99317 0.96026 0.98559 1.69697 1.36639 1.12721 1.38404 0.86592 0.78998 0.79350 0.83795 1.20907 1.20273 1.21633 1.22677 0.93469 0.97200 1.00442 0.90047 1.21625 0.98893 0.99932 0.98820 1.22258 0.88256 0.91967 0.98323 1.71933 1.17023 1.14205 1.18097 0.91020 0.92351 0.91859 0.88005 0.92022 0.90999 0.91833 0.86375 0.87104 0.87944 0.87775 0.91519 0.90753 0.80235 0.92854 0.92471 0.93017 0.91401 0.90748 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.22 9.18 37.16 0.34 -0.87 16 4 C 0.18 2.11 6.72 -156.38 -1.05 1.06 16 5 N -0.38 -4.88 12.16 30.90 0.38 -4.51 16 6 O 0.08 0.94 11.31 18.10 0.20 1.14 16 7 C 0.19 2.10 7.77 -13.06 -0.10 2.00 16 8 C -0.01 -0.10 5.13 -27.89 -0.14 -0.24 16 9 C -0.14 -1.44 4.87 -27.88 -0.14 -1.57 16 10 C 0.53 7.14 7.85 -10.99 -0.09 7.05 16 11 O -0.55 -8.68 16.24 5.56 0.09 -8.59 16 12 N -0.61 -8.42 3.33 -170.30 -0.57 -8.99 16 13 C 0.07 1.06 6.26 -2.90 -0.02 1.04 16 14 C 0.18 3.01 3.06 -66.10 -0.20 2.81 16 15 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 16 N -0.74 -15.47 4.97 -51.65 -0.26 -15.72 16 17 C -0.25 -6.55 10.45 -15.06 -0.16 -6.71 16 18 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -27.73 13.97 55.49 0.78 -26.96 16 21 Si 0.88 20.85 27.74 -169.99 -4.71 16.13 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.12 -1.61 3.26 -88.48 -0.29 -1.90 16 26 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 27 C -0.14 -1.65 9.31 37.16 0.35 -1.30 16 28 C 0.11 1.48 6.38 -2.54 -0.02 1.46 16 29 N -0.48 -6.09 11.55 -9.87 -0.11 -6.20 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.12 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.11 0.93 8.10 -51.93 -0.42 0.50 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 43 H 0.36 7.65 5.60 -40.82 -0.23 7.42 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 49 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -31.62 404.28 -7.93 -39.55 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.23 Total: 6.10 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.58 Total: 1.95 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.21 Total: -62.37 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.29 Total: -7.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.62 -7.93 -39.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054957448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.130 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds