Wall clock time and date at job start Tue Mar 31 2020 19:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 C 1.50703 * 109.47201 * 120.00235 * 2 1 3 5 5 N 1.29947 * 126.28207 * 299.97501 * 4 2 1 6 6 O 1.21309 * 110.24388 * 179.73002 * 5 4 2 7 7 C 1.33642 * 109.81127 * 0.46706 * 6 5 4 8 8 C 1.50696 * 126.55022 * 179.80826 * 7 6 5 9 9 C 1.52999 * 109.46851 * 269.68467 * 8 7 6 10 10 C 1.50698 * 109.47485 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99554 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00652 * 179.97438 * 10 9 8 13 13 C 1.47323 * 125.61271 * 0.13733 * 12 10 9 14 14 C 1.54322 * 107.12002 * 181.18523 * 13 12 10 15 15 H 1.09006 * 110.71995 * 263.52250 * 14 13 12 16 16 N 1.46496 * 110.72214 * 140.43180 * 14 13 12 17 17 C 1.36934 * 120.00548 * 88.83821 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.55158 * 103.10222 * 21.97354 * 14 13 12 26 26 H 1.09006 * 110.99798 * 82.70173 * 25 14 13 27 27 C 1.53002 * 111.00420 * 206.50966 * 25 14 13 28 28 C 1.47419 * 125.65254 * 180.02562 * 12 10 9 29 29 N 1.31130 * 106.89748 * 359.54129 * 7 6 5 30 30 H 1.08998 * 109.47128 * 59.99498 * 1 2 3 31 31 H 1.08994 * 109.46853 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47062 * 299.99975 * 1 2 3 33 33 H 1.09000 * 109.47318 * 240.00417 * 2 1 3 34 34 H 1.09004 * 109.46924 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47654 * 300.00180 * 3 2 1 36 36 H 1.09009 * 109.47080 * 60.00128 * 3 2 1 37 37 H 1.08996 * 109.47565 * 149.68663 * 8 7 6 38 38 H 1.09001 * 109.47254 * 29.68205 * 8 7 6 39 39 H 1.09007 * 109.47233 * 60.00120 * 9 8 7 40 40 H 1.08995 * 109.47636 * 300.00115 * 9 8 7 41 41 H 1.09002 * 110.06315 * 61.75417 * 13 12 10 42 42 H 1.08995 * 109.85090 * 300.49793 * 13 12 10 43 43 H 0.96999 * 119.99694 * 268.84346 * 16 14 13 44 44 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.46623 * 60.00930 * 27 25 14 46 46 H 1.08994 * 109.47147 * 180.02562 * 27 25 14 47 47 H 1.08994 * 109.47331 * 300.00698 * 27 25 14 48 48 H 1.09006 * 110.36928 * 36.99373 * 28 12 10 49 49 H 1.08995 * 110.37071 * 274.67366 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7953 -0.3744 2.4631 6 8 2.3374 -1.1506 3.2215 7 6 3.0000 -2.0778 2.5234 8 6 3.8070 -3.2189 3.0869 9 6 5.2580 -2.7723 3.2771 10 6 6.0650 -3.9131 3.8412 11 8 5.5322 -4.9787 4.0682 12 7 7.3790 -3.7496 4.0923 13 6 8.1484 -2.5138 3.8661 14 6 9.6090 -2.8080 4.2683 15 1 9.8026 -2.4755 5.2882 16 7 10.5418 -2.1747 3.3329 17 6 10.9708 -0.8935 3.5556 18 1 10.6217 -0.3501 4.4212 19 6 11.8542 -0.2934 2.6690 20 7 12.2669 0.9380 2.8833 21 14 12.4585 -1.2337 1.1723 22 1 13.6984 -1.9733 1.5198 23 1 11.4140 -2.1954 0.7370 24 1 12.7433 -0.2799 0.0703 25 6 9.6966 -4.3539 4.1690 26 1 9.8765 -4.6697 3.1413 27 6 10.7749 -4.9034 5.1051 28 6 8.2832 -4.7766 4.6408 29 7 2.8088 -1.8083 1.2544 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.7740 -4.0626 2.3976 38 1 3.3902 -3.5188 4.0484 39 1 5.2910 -1.9286 3.9665 40 1 5.6748 -2.4723 2.3157 41 1 7.7498 -1.7072 4.4814 42 1 8.1025 -2.2368 2.8130 43 1 10.8555 -2.6630 2.5557 44 1 12.8845 1.3572 2.2639 45 1 10.5356 -4.6323 6.1334 46 1 10.8153 -5.9889 5.0152 47 1 11.7419 -4.4803 4.8334 48 1 8.0281 -5.7587 4.2423 49 1 8.2334 -4.7836 5.7296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054957448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:42 Heat of formation + Delta-G solvation = 10.715628 kcal Electronic energy + Delta-G solvation = -28858.901480 eV Core-core repulsion = 24823.319594 eV Total energy + Delta-G solvation = -4035.581886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.69516 -41.19804 -39.12639 -37.92737 -36.34295 -35.93075 -34.56098 -33.93343 -32.89239 -31.91769 -29.45459 -28.20113 -28.16365 -26.13550 -25.67790 -25.49426 -23.85263 -22.77117 -21.59346 -21.06051 -20.22075 -19.51131 -19.15203 -18.69633 -18.08138 -17.49667 -16.74053 -16.61407 -16.15510 -16.04319 -15.71493 -15.24522 -15.06825 -14.86129 -14.56166 -14.47135 -14.42131 -14.26040 -13.83043 -13.74839 -13.42380 -13.37146 -13.24252 -13.15227 -12.93296 -12.89360 -12.70473 -12.66940 -12.31365 -12.29533 -12.24054 -12.15116 -12.10676 -11.90541 -11.89229 -11.79100 -11.40557 -11.13653 -10.98147 -10.84541 -9.66305 -9.35447 -8.00830 -5.35656 0.03064 1.11201 1.40572 1.42578 1.49617 1.55567 1.64803 2.03295 2.49588 2.52787 2.97136 3.27889 3.32184 3.58895 3.67266 3.75621 3.86000 3.88891 3.94341 4.00146 4.00537 4.14720 4.24595 4.34685 4.43315 4.46614 4.60605 4.62673 4.65592 4.65709 4.72287 4.77096 4.80208 4.87849 4.90901 4.91888 4.93993 5.01587 5.10087 5.13243 5.18819 5.23437 5.24640 5.32001 5.50340 5.79415 6.22840 6.48129 7.05692 7.07972 7.09080 7.82747 8.00684 9.20065 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.002762 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.291996 B =10134.489242 C =12301.854707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.170 3.830 5 N -0.399 5.399 6 O 0.072 5.928 7 C 0.194 3.806 8 C -0.002 4.002 9 C -0.130 4.130 10 C 0.535 3.465 11 O -0.573 6.573 12 N -0.613 5.613 13 C 0.083 3.917 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.738 5.738 17 C -0.227 4.227 18 H 0.064 0.936 19 C -0.059 4.059 20 N -0.982 5.982 21 Si 0.948 3.052 22 H -0.279 1.279 23 H -0.251 1.251 24 H -0.302 1.302 25 C -0.107 4.107 26 H 0.080 0.920 27 C -0.132 4.132 28 C 0.116 3.884 29 N -0.501 5.501 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.908 -9.030 -1.976 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.103 4.103 5 N -0.108 5.108 6 O 0.015 5.985 7 C -0.026 4.026 8 C -0.041 4.041 9 C -0.171 4.171 10 C 0.324 3.676 11 O -0.454 6.454 12 N -0.346 5.346 13 C -0.043 4.043 14 C 0.062 3.938 15 H 0.089 0.911 16 N -0.380 5.380 17 C -0.358 4.358 18 H 0.082 0.918 19 C -0.251 4.251 20 N -0.632 5.632 21 Si 0.776 3.224 22 H -0.206 1.206 23 H -0.176 1.176 24 H -0.229 1.229 25 C -0.126 4.126 26 H 0.098 0.902 27 C -0.190 4.190 28 C -0.006 4.006 29 N -0.235 5.235 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.675 -8.755 -1.969 22.538 hybrid contribution 0.924 0.103 -0.804 1.229 sum -19.751 -8.651 -2.772 21.740 Atomic orbital electron populations 1.21817 0.91599 1.02490 1.03735 1.19798 0.97407 0.95643 0.90023 1.21841 1.00903 0.93504 1.03749 1.26435 0.96073 0.92487 0.95321 1.74576 1.18740 1.14224 1.03293 1.85286 1.47913 1.29922 1.35371 1.29065 0.94071 0.93781 0.85730 1.19979 0.90212 0.89451 1.04483 1.21558 0.93334 0.97843 1.04318 1.20244 0.80763 0.89145 0.77403 1.90691 1.70367 1.29207 1.55138 1.48596 1.08020 1.14921 1.63068 1.23015 0.93820 0.86028 1.01441 1.21425 0.86870 0.91801 0.93717 0.91054 1.42657 1.53501 1.13518 1.28310 1.19012 1.20160 0.89724 1.06903 0.91820 1.25423 1.00593 0.96974 1.02075 1.69872 1.38439 1.14928 1.39953 0.85524 0.79026 0.78147 0.79739 1.20567 1.17562 1.22879 1.22597 0.94661 0.94455 1.00934 0.90161 1.21609 0.97270 1.01282 0.98795 1.22313 0.87278 0.91910 0.99084 1.71950 1.17819 1.14867 1.18826 0.88636 0.92711 0.92728 0.87302 0.93330 0.88575 0.92715 0.86148 0.85613 0.86793 0.87832 0.91049 0.91671 0.79918 0.93441 0.91669 0.90691 0.93140 0.90158 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.01 -0.15 3.39 -11.54 -0.04 -0.19 16 3 C -0.14 -2.21 9.18 71.98 0.66 -1.55 16 4 C 0.17 3.99 6.72 138.47 0.93 4.93 16 5 N -0.40 -10.08 12.16 -60.31 -0.73 -10.82 16 6 O 0.07 1.69 11.31 74.83 0.85 2.53 16 7 C 0.19 4.18 7.77 88.38 0.69 4.87 16 8 C 0.00 -0.04 5.13 29.85 0.15 0.12 16 9 C -0.13 -2.52 4.87 29.85 0.15 -2.37 16 10 C 0.53 13.20 7.85 87.66 0.69 13.89 16 11 O -0.57 -16.73 16.24 -3.04 -0.05 -16.78 16 12 N -0.61 -15.52 3.33 -811.10 -2.70 -18.23 16 13 C 0.08 2.35 6.26 86.67 0.54 2.89 16 14 C 0.17 5.45 3.06 46.18 0.14 5.60 16 15 H 0.07 2.37 8.00 -2.38 -0.02 2.35 16 16 N -0.74 -30.23 4.97 -317.34 -1.58 -31.81 16 17 C -0.23 -11.77 10.45 84.03 0.88 -10.89 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 19 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 20 N -0.98 -60.30 13.97 21.65 0.30 -60.00 16 21 Si 0.95 43.02 27.74 68.60 1.90 44.92 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 C -0.11 -2.66 3.26 -9.41 -0.03 -2.69 16 26 H 0.08 2.06 8.00 -2.38 -0.02 2.04 16 27 C -0.13 -2.89 9.31 71.98 0.67 -2.22 16 28 C 0.12 2.69 6.38 86.85 0.55 3.24 16 29 N -0.50 -12.34 11.55 -303.20 -3.50 -15.84 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.12 2.10 8.10 -2.39 -0.02 2.08 16 38 H 0.13 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 43 H 0.37 14.68 5.60 -92.71 -0.52 14.16 16 44 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.06 1.32 8.07 -2.39 -0.02 1.30 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.82 8.04 -2.38 -0.02 1.80 16 49 H 0.08 1.70 7.98 -2.39 -0.02 1.69 16 Total: -1.00 -68.58 404.28 1.96 -66.63 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.36 Total: 27.77 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 7.11 Total: 11.61 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -8.21 Total: -136.68 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.80 Total: -14.24 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.90 Total: 44.92 kcal Total: -68.58 1.96 -66.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054957448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.342 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds