Wall clock time and date at job start Tue Mar 31 2020 19:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47089 * 120.00157 * 2 1 3 5 5 N 1.29948 * 126.28506 * 300.02124 * 4 2 1 6 6 O 1.21303 * 110.24669 * 179.97438 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50690 * 126.55005 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47386 * 270.02359 * 8 7 6 10 10 C 1.50703 * 109.47392 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99997 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99750 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64675 * 179.71238 * 12 10 9 14 14 C 1.54334 * 107.26675 * 178.84692 * 13 12 10 15 15 H 1.09002 * 110.66149 * 96.52396 * 14 13 12 16 16 C 1.52996 * 110.85234 * 219.67269 * 14 13 12 17 17 C 1.55157 * 103.01859 * 338.14548 * 14 13 12 18 18 H 1.08992 * 111.03737 * 277.20942 * 17 14 13 19 19 N 1.46506 * 110.99861 * 153.37898 * 17 14 13 20 20 C 1.36934 * 119.99648 * 161.34906 * 19 17 14 21 21 H 1.08003 * 119.99945 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00069 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00075 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47212 * 60.00318 * 24 22 20 26 26 H 1.48504 * 109.47043 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47064 * 299.99914 * 24 22 20 28 28 C 1.47426 * 125.65216 * 0.02562 * 12 10 9 29 29 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 30 30 H 1.09010 * 109.47406 * 299.99853 * 1 2 3 31 31 H 1.09001 * 109.47711 * 59.99864 * 1 2 3 32 32 H 1.09000 * 109.47579 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46929 * 239.99899 * 2 1 3 34 34 H 1.09000 * 109.47281 * 60.00114 * 3 2 1 35 35 H 1.08999 * 109.47171 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47127 * 299.99880 * 3 2 1 37 37 H 1.09000 * 109.47505 * 30.02404 * 8 7 6 38 38 H 1.09005 * 109.47328 * 150.02793 * 8 7 6 39 39 H 1.09000 * 109.46835 * 300.00455 * 9 8 7 40 40 H 1.08996 * 109.46757 * 59.99816 * 9 8 7 41 41 H 1.08995 * 109.88292 * 298.40340 * 13 12 10 42 42 H 1.09000 * 109.87797 * 59.56117 * 13 12 10 43 43 H 1.09001 * 109.47075 * 173.69591 * 16 14 13 44 44 H 1.09001 * 109.47390 * 293.70110 * 16 14 13 45 45 H 1.09003 * 109.46758 * 53.69664 * 16 14 13 46 46 H 0.97003 * 120.00351 * 341.34521 * 19 17 14 47 47 H 0.96998 * 120.00029 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.36554 * 322.93247 * 28 12 10 49 49 H 1.09001 * 110.36757 * 85.24955 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3408 -1.1482 3.2215 7 6 2.9993 -2.0783 2.5235 8 6 3.8065 -3.2192 3.0870 9 6 5.2570 -2.7719 3.2788 10 6 6.0644 -3.9131 3.8418 11 8 5.5320 -4.9790 4.0678 12 7 7.3779 -3.7487 4.0950 13 6 8.2786 -4.7711 4.6473 14 6 9.6855 -4.1429 4.7356 15 1 9.8731 -3.7591 5.7385 16 6 10.7603 -5.1556 4.3358 17 6 9.6152 -2.9824 3.7081 18 1 9.8002 -3.3437 2.6966 19 7 10.5517 -1.9122 4.0600 20 6 10.9286 -0.9945 3.1160 21 1 10.5358 -1.0600 2.1121 22 6 11.8156 0.0199 3.4495 23 7 12.2947 0.0994 4.6728 24 14 12.3303 1.2713 2.1616 25 1 11.1309 1.9924 1.6650 26 1 13.2775 2.2424 2.7658 27 1 12.9922 0.5735 1.0302 28 6 8.1482 -2.5120 3.8701 29 7 2.8097 -1.8077 1.2545 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 3.3890 -3.5199 4.0479 38 1 3.7746 -4.0625 2.3970 39 1 5.6745 -2.4712 2.3179 40 1 5.2890 -1.9286 3.9687 41 1 7.9393 -5.0667 5.6400 42 1 8.3028 -5.6388 3.9880 43 1 11.7303 -4.6600 4.2977 44 1 10.7921 -5.9606 5.0701 45 1 10.5240 -5.5679 3.3548 46 1 10.9048 -1.8535 4.9615 47 1 12.9148 0.8080 4.9057 48 1 7.8076 -2.0126 2.9631 49 1 8.0558 -1.8462 4.7282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054957449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:47 Heat of formation + Delta-G solvation = 7.890174 kcal Electronic energy + Delta-G solvation = -28792.359467 eV Core-core repulsion = 24756.655060 eV Total energy + Delta-G solvation = -4035.704407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.68785 -41.18897 -39.06845 -37.91953 -36.32846 -35.84079 -34.55445 -33.89332 -32.52995 -31.89490 -29.11839 -28.19439 -28.16060 -26.15422 -25.72171 -25.66787 -23.87042 -22.90550 -21.32713 -21.04051 -20.24806 -19.14692 -19.08636 -18.68677 -18.07625 -17.44845 -16.71430 -16.62517 -16.12865 -16.01459 -15.54698 -15.31161 -14.97466 -14.77900 -14.56551 -14.47895 -14.46226 -14.22234 -13.83681 -13.59313 -13.53813 -13.23715 -13.12729 -13.04844 -12.87827 -12.79901 -12.69172 -12.66115 -12.30476 -12.27667 -12.24772 -12.16188 -12.10241 -11.97387 -11.88408 -11.68690 -11.36034 -11.13123 -10.93782 -10.83229 -9.67085 -9.02565 -7.93389 -5.22594 0.03682 1.11972 1.51022 1.51755 1.56621 1.57811 1.65492 2.04389 2.52905 2.58233 2.98126 3.35468 3.38997 3.65323 3.75669 3.81573 3.90233 3.95536 3.97022 4.01299 4.01940 4.20769 4.26081 4.39913 4.45196 4.50851 4.59218 4.63190 4.66197 4.66639 4.73609 4.77814 4.80851 4.88149 4.91366 4.91908 4.94521 5.02371 5.11894 5.15824 5.19470 5.22866 5.25367 5.36545 5.48218 5.57055 6.27665 6.50489 7.07584 7.08627 7.35814 8.07840 8.31526 9.29167 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.002777 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.634232 B =10079.030914 C =12672.248214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.170 3.830 5 N -0.400 5.400 6 O 0.070 5.930 7 C 0.194 3.806 8 C -0.003 4.003 9 C -0.129 4.129 10 C 0.534 3.466 11 O -0.574 6.574 12 N -0.612 5.612 13 C 0.119 3.881 14 C -0.104 4.104 15 H 0.079 0.921 16 C -0.130 4.130 17 C 0.169 3.831 18 H 0.062 0.938 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.078 0.922 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.300 1.300 27 H -0.279 1.279 28 C 0.084 3.916 29 N -0.499 5.499 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.077 0.923 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.890 -5.419 -6.088 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.103 4.103 5 N -0.109 5.109 6 O 0.014 5.986 7 C -0.026 4.026 8 C -0.042 4.042 9 C -0.169 4.169 10 C 0.323 3.677 11 O -0.455 6.455 12 N -0.345 5.345 13 C -0.003 4.003 14 C -0.124 4.124 15 H 0.097 0.903 16 C -0.187 4.187 17 C 0.058 3.942 18 H 0.080 0.920 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.096 0.904 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.226 1.226 27 H -0.205 1.205 28 C -0.042 4.042 29 N -0.233 5.233 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.210 0.790 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.651 -5.261 -6.356 22.239 hybrid contribution 0.910 0.906 0.139 1.291 sum -19.741 -4.356 -6.217 21.150 Atomic orbital electron populations 1.21821 0.91673 1.02483 1.03712 1.19797 0.97353 0.95661 0.90023 1.21839 1.00954 0.93476 1.03715 1.26446 0.95968 0.92559 0.95306 1.74578 1.18597 1.14412 1.03327 1.85288 1.47957 1.29938 1.35414 1.29048 0.94128 0.93673 0.85743 1.19977 0.90204 0.89527 1.04457 1.21556 0.93296 0.97654 1.04419 1.20297 0.80620 0.89221 0.77530 1.90687 1.70421 1.29273 1.55132 1.48518 1.08107 1.15005 1.62839 1.21995 0.88050 0.91101 0.99170 1.22394 0.94068 0.96082 0.99828 0.90311 1.21626 0.97388 0.97925 1.01783 1.21527 0.87541 0.87931 0.97179 0.91986 1.42388 1.51468 1.30558 1.11544 1.19540 1.20262 1.04441 0.92928 0.90367 1.25460 1.00891 1.01541 0.98190 1.69787 1.36562 1.35725 1.19505 0.85338 0.77639 0.78952 0.78580 1.20463 1.22618 1.20529 1.23198 0.93704 0.86048 1.01237 1.71949 1.17816 1.14820 1.18732 0.92788 0.88621 0.92728 0.87204 0.92789 0.93224 0.88576 0.85802 0.86003 0.87406 0.86975 0.91052 0.90721 0.93475 0.90822 0.92046 0.79047 0.94058 0.90490 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.17 71.98 0.66 -1.16 16 2 C -0.01 -0.14 3.39 -11.54 -0.04 -0.18 16 3 C -0.14 -2.11 9.18 71.98 0.66 -1.45 16 4 C 0.17 3.93 6.72 138.46 0.93 4.86 16 5 N -0.40 -10.02 12.16 -60.31 -0.73 -10.75 16 6 O 0.07 1.66 11.31 74.83 0.85 2.51 16 7 C 0.19 4.16 7.77 88.38 0.69 4.85 16 8 C 0.00 -0.04 5.13 29.85 0.15 0.11 16 9 C -0.13 -2.52 4.69 29.85 0.14 -2.38 16 10 C 0.53 13.69 7.85 87.66 0.69 14.38 16 11 O -0.57 -17.39 16.31 -3.03 -0.05 -17.44 16 12 N -0.61 -16.49 3.33 -811.78 -2.70 -19.19 16 13 C 0.12 3.07 6.48 86.73 0.56 3.63 16 14 C -0.10 -2.93 3.16 -9.60 -0.03 -2.96 16 15 H 0.08 2.34 7.99 -2.39 -0.02 2.32 16 16 C -0.13 -3.29 9.16 71.98 0.66 -2.63 16 17 C 0.17 5.78 3.14 46.38 0.15 5.93 16 18 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 19 N -0.72 -32.38 5.28 -316.38 -1.67 -34.05 16 20 C -0.24 -12.15 9.98 84.03 0.84 -11.31 16 21 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.97 -55.92 13.06 21.65 0.28 -55.64 16 24 Si 0.97 43.78 29.55 68.60 2.03 45.81 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 28 C 0.08 2.52 6.38 86.85 0.55 3.08 16 29 N -0.50 -12.05 11.55 -303.21 -3.50 -15.56 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 1.88 8.10 -2.39 -0.02 1.86 16 38 H 0.12 2.12 8.10 -2.38 -0.02 2.10 16 39 H 0.11 2.08 7.85 -2.39 -0.02 2.06 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.83 7.77 -2.39 -0.02 1.82 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 46 H 0.38 18.45 7.71 -92.71 -0.71 17.73 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.08 2.21 7.48 -2.39 -0.02 2.19 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -64.71 406.51 1.81 -62.91 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.23 Total: 29.85 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 7.08 Total: 11.56 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -8.32 Total: -135.19 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.80 Total: -14.94 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -64.71 1.81 -62.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054957449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.796 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds