Wall clock time and date at job start Tue Mar 31 2020 19:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 110.64110 * 2 1 4 4 C 1.54316 * 110.72233 * 236.66247 * 2 1 3 5 5 N 1.47019 * 107.27414 * 219.44144 * 4 2 1 6 6 C 1.36937 * 125.65426 * 178.92017 * 5 4 2 7 7 H 1.07994 * 120.00245 * 174.87269 * 6 5 4 8 8 C 1.38821 * 119.99413 * 354.87144 * 6 5 4 9 9 N 1.31617 * 120.00150 * 7.06325 * 8 6 5 10 10 Si 1.86800 * 119.99694 * 187.06273 * 8 6 5 11 11 H 1.48499 * 109.47180 * 94.98527 * 10 8 6 12 12 H 1.48497 * 109.47099 * 214.98721 * 10 8 6 13 13 H 1.48503 * 109.47190 * 334.98479 * 10 8 6 14 14 C 1.47427 * 108.70322 * 358.93962 * 5 4 2 15 15 C 1.54907 * 104.82976 * 24.12881 * 14 5 4 16 16 H 1.08997 * 111.04154 * 81.07689 * 15 14 5 17 17 C 1.53003 * 111.00628 * 204.91734 * 15 14 5 18 18 N 1.46501 * 109.46826 * 287.19776 * 17 15 14 19 19 C 1.34777 * 119.99944 * 179.97438 * 18 17 15 20 20 O 1.21492 * 119.99954 * 359.97438 * 19 18 17 21 21 C 1.48330 * 120.00142 * 179.72342 * 19 18 17 22 22 C 1.42270 * 126.93951 * 179.97438 * 21 19 18 23 23 C 1.35313 * 103.92305 * 179.91033 * 22 21 19 24 24 C 1.50702 * 126.66857 * 180.11412 * 23 22 21 25 25 N 1.46896 * 109.47495 * 90.25473 * 24 23 22 26 26 C 1.46901 * 110.99938 * 170.00095 * 25 24 23 27 27 C 1.46898 * 111.00049 * 293.95793 * 25 24 23 28 28 O 1.34012 * 106.66790 * 0.34824 * 23 22 21 29 29 N 1.20907 * 111.84887 * 359.75990 * 28 23 22 30 30 H 1.09004 * 109.47279 * 296.85811 * 1 2 3 31 31 H 1.08995 * 109.47327 * 56.86311 * 1 2 3 32 32 H 1.09004 * 109.46812 * 176.86193 * 1 2 3 33 33 H 1.08997 * 109.88534 * 338.85875 * 4 2 1 34 34 H 1.09003 * 109.88134 * 99.86897 * 4 2 1 35 35 H 0.96994 * 119.99990 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.37004 * 265.29324 * 14 5 4 37 37 H 1.09006 * 110.36833 * 142.96385 * 14 5 4 38 38 H 1.08992 * 109.47570 * 167.19816 * 17 15 14 39 39 H 1.09002 * 109.46950 * 47.19045 * 17 15 14 40 40 H 0.96999 * 120.00370 * 359.97438 * 18 17 15 41 41 H 1.08005 * 128.03728 * 0.02562 * 22 21 19 42 42 H 1.09000 * 109.46897 * 210.26053 * 24 23 22 43 43 H 1.09002 * 109.46831 * 330.25804 * 24 23 22 44 44 H 1.08999 * 109.47197 * 60.00368 * 26 25 24 45 45 H 1.09005 * 109.46995 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.47187 * 299.99783 * 26 25 24 47 47 H 1.08995 * 109.47511 * 60.00122 * 27 25 24 48 48 H 1.09008 * 109.47076 * 179.97438 * 27 25 24 49 49 H 1.09000 * 109.47215 * 299.99483 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7363 6 6 4.0037 -2.4002 -1.4973 7 1 4.8936 -2.8487 -1.0812 8 6 3.6293 -2.6837 -2.8037 9 7 2.6276 -2.0335 -3.3570 10 14 4.5474 -3.9878 -3.7762 11 1 3.8313 -5.2840 -3.6647 12 1 4.6185 -3.5827 -5.2031 13 1 5.9221 -4.1335 -3.2339 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2152 16 1 1.4448 -1.6506 1.4408 17 6 2.2277 0.1123 2.4394 18 7 2.6329 -0.6917 3.5952 19 6 2.8260 -0.1023 4.7917 20 8 2.6645 1.0959 4.9118 21 6 3.2302 -0.9172 5.9633 22 6 3.4729 -0.4519 7.2857 23 6 3.8058 -1.5714 7.9688 24 6 4.1636 -1.6612 9.4300 25 7 2.9475 -1.9013 10.2182 26 6 3.2792 -2.2295 11.6111 27 6 2.0401 -0.7480 10.1507 28 8 3.7605 -2.5842 7.0924 29 7 3.4413 -2.2097 5.9881 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5617 -0.8605 32 1 -0.3633 -1.0262 -0.0563 33 1 1.3130 -1.4785 -1.5750 34 1 2.3715 -0.1059 -1.9986 35 1 2.3658 -2.2319 -4.2696 36 1 4.1931 -0.4463 0.7993 37 1 3.7961 -2.1404 1.2207 38 1 1.2748 0.5975 2.6504 39 1 2.9854 0.8703 2.2407 40 1 2.7622 -1.6482 3.4993 41 1 3.4051 0.5597 7.6582 42 1 4.8638 -2.4824 9.5828 43 1 4.6247 -0.7265 9.7492 44 1 3.8278 -1.4009 12.0589 45 1 2.3608 -2.4029 12.1721 46 1 3.8948 -3.1286 11.6358 47 1 1.7551 -0.5701 9.1139 48 1 1.1478 -0.9526 10.7425 49 1 2.5439 0.1342 10.5456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092753350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:20 Heat of formation + Delta-G solvation = 57.245527 kcal Electronic energy + Delta-G solvation = -28724.664786 eV Core-core repulsion = 24691.100588 eV Total energy + Delta-G solvation = -4033.564198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.33655 -39.72195 -38.13397 -38.00477 -34.80032 -34.22237 -33.02700 -32.61493 -30.73223 -29.42822 -28.16363 -27.85530 -26.20991 -25.52774 -24.33085 -23.20462 -22.81079 -22.22302 -20.38527 -19.99670 -19.14098 -18.10038 -17.93554 -17.06007 -16.66147 -16.09179 -15.86283 -15.80012 -15.37592 -15.31892 -14.83167 -14.32510 -14.09249 -13.84966 -13.66084 -13.55486 -13.25391 -12.97120 -12.91249 -12.53263 -12.41604 -12.34911 -12.16008 -11.87024 -11.76165 -11.66331 -11.37671 -11.23201 -10.80069 -10.79195 -10.67341 -10.49075 -10.11138 -9.98914 -9.93483 -9.91493 -9.73323 -9.58440 -9.07947 -8.99945 -8.56961 -6.81915 -5.71607 -3.03761 0.88406 1.34336 2.57538 2.89487 3.05289 3.40913 3.44219 3.46226 3.48090 3.76333 4.17295 4.47823 4.50195 4.59333 4.67210 4.79709 4.84613 4.99822 5.02858 5.08061 5.12129 5.17701 5.19481 5.32608 5.35348 5.46928 5.52877 5.53293 5.55467 5.74034 5.83545 6.01372 6.06290 6.17948 6.26453 6.28772 6.33401 6.35525 6.47883 6.58576 6.62666 6.74737 6.93907 7.33526 7.57376 7.65344 7.77622 7.84531 8.01397 8.26733 9.22823 9.83212 10.49790 11.40443 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.002093 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.990157 B =13376.894776 C =14473.461983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.082 0.918 17 C 0.132 3.868 18 N -0.706 5.706 19 C 0.596 3.404 20 O -0.528 6.528 21 C -0.024 4.024 22 C -0.176 4.176 23 C -0.026 4.026 24 C 0.133 3.867 25 N -0.545 5.545 26 C 0.025 3.975 27 C 0.015 3.985 28 O 0.134 5.866 29 N -0.325 5.325 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.179 0.821 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 2.945 28.897 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.100 0.900 17 C 0.009 3.991 18 N -0.357 5.357 19 C 0.379 3.621 20 O -0.403 6.403 21 C -0.183 4.183 22 C -0.199 4.199 23 C -0.089 4.089 24 C 0.004 3.996 25 N -0.269 5.269 26 C -0.123 4.123 27 C -0.133 4.133 28 O 0.057 5.943 29 N -0.024 5.024 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.244 0.756 41 H 0.196 0.804 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.151 2.411 27.519 27.648 hybrid contribution 0.891 0.274 0.067 0.934 sum -0.260 2.685 27.585 27.717 Atomic orbital electron populations 1.21701 0.95265 1.01685 1.00571 1.22440 0.95199 0.99096 0.96214 0.91351 1.21226 0.89248 0.93023 0.90681 1.44458 1.32767 1.51469 1.04487 1.19060 1.04480 1.18310 0.93869 0.90471 1.24825 0.98549 0.99917 0.97118 1.69973 1.30194 1.42647 1.13860 0.86121 0.78891 0.81581 0.79337 1.21622 1.21784 1.20657 1.21597 0.92912 0.97133 0.86899 1.22692 0.99626 0.98096 0.92943 0.89998 1.21528 1.00415 0.93793 0.83398 1.45975 1.68078 1.12864 1.08754 1.16860 0.77725 0.86196 0.81319 1.90792 1.51667 1.13618 1.84238 1.23531 1.07048 0.90771 0.96959 1.22421 1.05057 1.01059 0.91353 1.24166 1.03509 0.86477 0.94782 1.20516 0.92478 1.03307 0.83264 1.61903 1.14190 1.38987 1.11862 1.22412 1.01856 1.00697 0.87289 1.22547 0.96725 0.90732 1.03302 1.84807 1.62036 1.34482 1.12976 1.74237 1.13382 1.13813 1.00989 0.93663 0.92704 0.92670 0.93129 0.94174 0.93766 0.96353 0.94493 0.91148 0.90898 0.75598 0.80404 0.87787 0.90740 0.95141 0.90729 0.90773 0.90869 0.90799 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.16 37.16 0.34 -1.77 16 2 C -0.11 -2.00 3.02 -88.79 -0.27 -2.27 16 3 H 0.07 1.20 8.04 -51.92 -0.42 0.78 16 4 C 0.18 4.41 4.98 -3.07 -0.02 4.40 16 5 N -0.61 -15.54 3.39 -170.08 -0.58 -16.12 16 6 C -0.23 -6.45 10.27 -15.06 -0.15 -6.60 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 9 N -0.92 -27.14 10.36 55.49 0.57 -26.57 16 10 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.14 2.91 6.65 -2.53 -0.02 2.89 16 15 C -0.11 -1.94 2.50 -88.47 -0.22 -2.16 16 16 H 0.08 1.39 8.05 -51.93 -0.42 0.98 16 17 C 0.13 1.96 5.13 -4.04 -0.02 1.94 16 18 N -0.71 -10.05 5.50 -61.09 -0.34 -10.39 16 19 C 0.60 8.81 7.85 -12.11 -0.10 8.72 16 20 O -0.53 -9.01 16.95 5.37 0.09 -8.92 16 21 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 22 C -0.18 -1.74 9.59 -39.08 -0.37 -2.12 16 23 C -0.03 -0.22 6.34 -35.35 -0.22 -0.44 16 24 C 0.13 0.72 5.52 -4.98 -0.03 0.69 16 25 N -0.54 -3.29 5.01 -252.72 -1.27 -4.55 16 26 C 0.03 0.10 9.57 60.07 0.57 0.67 16 27 C 0.01 0.09 9.29 60.06 0.56 0.64 16 28 O 0.13 1.47 11.18 17.25 0.19 1.66 16 29 N -0.33 -4.16 11.84 33.29 0.39 -3.76 16 30 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.89 8.06 -51.93 -0.42 0.48 16 33 H 0.05 1.35 6.92 -51.93 -0.36 0.99 16 34 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 36 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 40 H 0.41 5.56 8.23 -40.82 -0.34 5.22 16 41 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.10 0.41 8.06 -51.93 -0.42 0.00 16 43 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 44 H 0.03 0.09 8.14 -51.93 -0.42 -0.33 16 45 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 46 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 47 H 0.07 0.52 6.35 -51.93 -0.33 0.19 16 48 H 0.07 0.37 8.12 -51.92 -0.42 -0.05 16 49 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -33.07 400.29 -8.66 -41.73 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.10 Total: 0.23 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.63 Total: 3.36 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -1.21 Total: -61.39 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.28 Total: -7.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.07 -8.66 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092753350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.977 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds