Wall clock time and date at job start Tue Mar 31 2020 19:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 110.64110 * 2 1 4 4 C 1.54316 * 110.72233 * 236.66247 * 2 1 3 5 5 N 1.47019 * 107.27414 * 219.44144 * 4 2 1 6 6 C 1.36937 * 125.65426 * 178.92017 * 5 4 2 7 7 H 1.07994 * 120.00245 * 174.87269 * 6 5 4 8 8 C 1.38821 * 119.99413 * 354.87144 * 6 5 4 9 9 N 1.31617 * 120.00150 * 7.06325 * 8 6 5 10 10 Si 1.86800 * 119.99694 * 187.06273 * 8 6 5 11 11 H 1.48499 * 109.47180 * 94.98527 * 10 8 6 12 12 H 1.48497 * 109.47099 * 214.98721 * 10 8 6 13 13 H 1.48503 * 109.47190 * 334.98479 * 10 8 6 14 14 C 1.47427 * 108.70322 * 358.93962 * 5 4 2 15 15 C 1.54907 * 104.82976 * 24.12881 * 14 5 4 16 16 H 1.08997 * 111.04154 * 81.07689 * 15 14 5 17 17 C 1.53003 * 111.00628 * 204.91734 * 15 14 5 18 18 N 1.46501 * 109.46826 * 287.19776 * 17 15 14 19 19 C 1.34777 * 119.99944 * 179.97438 * 18 17 15 20 20 O 1.21492 * 119.99954 * 359.97438 * 19 18 17 21 21 C 1.48330 * 120.00142 * 179.72342 * 19 18 17 22 22 C 1.42270 * 126.93951 * 179.97438 * 21 19 18 23 23 C 1.35313 * 103.92305 * 179.91033 * 22 21 19 24 24 C 1.50702 * 126.66857 * 180.11412 * 23 22 21 25 25 N 1.46896 * 109.47495 * 90.25473 * 24 23 22 26 26 C 1.46901 * 110.99938 * 170.00095 * 25 24 23 27 27 C 1.46898 * 111.00049 * 293.95793 * 25 24 23 28 28 O 1.34012 * 106.66790 * 0.34824 * 23 22 21 29 29 N 1.20907 * 111.84887 * 359.75990 * 28 23 22 30 30 H 1.09004 * 109.47279 * 296.85811 * 1 2 3 31 31 H 1.08995 * 109.47327 * 56.86311 * 1 2 3 32 32 H 1.09004 * 109.46812 * 176.86193 * 1 2 3 33 33 H 1.08997 * 109.88534 * 338.85875 * 4 2 1 34 34 H 1.09003 * 109.88134 * 99.86897 * 4 2 1 35 35 H 0.96994 * 119.99990 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.37004 * 265.29324 * 14 5 4 37 37 H 1.09006 * 110.36833 * 142.96385 * 14 5 4 38 38 H 1.08992 * 109.47570 * 167.19816 * 17 15 14 39 39 H 1.09002 * 109.46950 * 47.19045 * 17 15 14 40 40 H 0.96999 * 120.00370 * 359.97438 * 18 17 15 41 41 H 1.08005 * 128.03728 * 0.02562 * 22 21 19 42 42 H 1.09000 * 109.46897 * 210.26053 * 24 23 22 43 43 H 1.09002 * 109.46831 * 330.25804 * 24 23 22 44 44 H 1.08999 * 109.47197 * 60.00368 * 26 25 24 45 45 H 1.09005 * 109.46995 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.47187 * 299.99783 * 26 25 24 47 47 H 1.08995 * 109.47511 * 60.00122 * 27 25 24 48 48 H 1.09008 * 109.47076 * 179.97438 * 27 25 24 49 49 H 1.09000 * 109.47215 * 299.99483 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7363 6 6 4.0037 -2.4002 -1.4973 7 1 4.8936 -2.8487 -1.0812 8 6 3.6293 -2.6837 -2.8037 9 7 2.6276 -2.0335 -3.3570 10 14 4.5474 -3.9878 -3.7762 11 1 3.8313 -5.2840 -3.6647 12 1 4.6185 -3.5827 -5.2031 13 1 5.9221 -4.1335 -3.2339 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2152 16 1 1.4448 -1.6506 1.4408 17 6 2.2277 0.1123 2.4394 18 7 2.6329 -0.6917 3.5952 19 6 2.8260 -0.1023 4.7917 20 8 2.6645 1.0959 4.9118 21 6 3.2302 -0.9172 5.9633 22 6 3.4729 -0.4519 7.2857 23 6 3.8058 -1.5714 7.9688 24 6 4.1636 -1.6612 9.4300 25 7 2.9475 -1.9013 10.2182 26 6 3.2792 -2.2295 11.6111 27 6 2.0401 -0.7480 10.1507 28 8 3.7605 -2.5842 7.0924 29 7 3.4413 -2.2097 5.9881 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5617 -0.8605 32 1 -0.3633 -1.0262 -0.0563 33 1 1.3130 -1.4785 -1.5750 34 1 2.3715 -0.1059 -1.9986 35 1 2.3658 -2.2319 -4.2696 36 1 4.1931 -0.4463 0.7993 37 1 3.7961 -2.1404 1.2207 38 1 1.2748 0.5975 2.6504 39 1 2.9854 0.8703 2.2407 40 1 2.7622 -1.6482 3.4993 41 1 3.4051 0.5597 7.6582 42 1 4.8638 -2.4824 9.5828 43 1 4.6247 -0.7265 9.7492 44 1 3.8278 -1.4009 12.0589 45 1 2.3608 -2.4029 12.1721 46 1 3.8948 -3.1286 11.6358 47 1 1.7551 -0.5701 9.1139 48 1 1.1478 -0.9526 10.7425 49 1 2.5439 0.1342 10.5456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092753350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:19 Heat of formation + Delta-G solvation = 33.906446 kcal Electronic energy + Delta-G solvation = -28725.676845 eV Core-core repulsion = 24691.100588 eV Total energy + Delta-G solvation = -4034.576257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.19923 -40.94184 -39.60317 -38.54343 -36.21316 -35.14972 -34.69332 -33.42379 -32.57561 -30.91974 -28.58869 -28.30694 -27.96481 -27.05192 -25.64347 -24.24095 -23.88389 -23.00186 -21.69856 -21.55612 -20.54816 -18.97126 -18.91731 -18.67007 -17.92240 -17.34110 -16.75036 -16.50001 -16.23445 -16.21474 -16.09926 -15.80360 -15.60526 -14.98249 -14.78342 -14.72631 -14.46494 -14.20469 -14.01613 -13.47116 -13.34560 -13.31253 -13.12782 -12.90249 -12.86754 -12.76679 -12.71456 -12.54879 -12.46214 -12.37988 -11.97315 -11.88812 -11.71766 -11.59526 -11.56997 -11.41752 -11.21874 -10.70303 -10.65565 -10.27791 -9.36882 -8.91226 -7.87781 -5.22256 -0.01017 0.55664 1.43991 1.45926 1.54748 1.74085 1.96690 1.98031 2.47491 2.82582 3.04893 3.29316 3.42508 3.55599 3.73306 3.86506 3.87915 3.90920 4.02662 4.10251 4.26127 4.31807 4.45047 4.45631 4.52429 4.56075 4.60219 4.69922 4.73333 4.75665 4.78303 4.80405 4.85427 4.91967 5.03970 5.05446 5.08850 5.13125 5.22265 5.33682 5.41005 5.46044 5.69429 5.79851 5.92281 6.01075 6.18305 6.20593 6.81841 6.99353 7.08747 7.75797 8.40793 9.22838 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.002093 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.990157 B =13376.894776 C =14473.461983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.065 4.065 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.137 3.863 15 C -0.092 4.092 16 H 0.086 0.914 17 C 0.143 3.857 18 N -0.704 5.704 19 C 0.597 3.403 20 O -0.554 6.554 21 C -0.045 4.045 22 C -0.179 4.179 23 C -0.008 4.008 24 C 0.132 3.868 25 N -0.563 5.563 26 C 0.026 3.974 27 C 0.015 3.985 28 O 0.134 5.866 29 N -0.345 5.345 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.000 1.000 35 H 0.247 0.753 36 H 0.019 0.981 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.412 0.588 41 H 0.193 0.807 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 2.840 31.698 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.098 0.902 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.596 5.596 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.193 1.193 14 C 0.011 3.989 15 C -0.112 4.112 16 H 0.104 0.896 17 C 0.020 3.980 18 N -0.354 5.354 19 C 0.382 3.618 20 O -0.431 6.431 21 C -0.203 4.203 22 C -0.203 4.203 23 C -0.072 4.072 24 C 0.004 3.996 25 N -0.288 5.288 26 C -0.121 4.121 27 C -0.133 4.133 28 O 0.056 5.944 29 N -0.043 5.043 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.248 0.752 41 H 0.210 0.790 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.758 2.298 30.351 30.448 hybrid contribution 0.821 0.292 -0.714 1.127 sum 0.063 2.590 29.637 29.750 Atomic orbital electron populations 1.21651 0.92875 1.01646 1.02368 1.22318 0.97070 0.98676 0.93826 0.90236 1.21002 0.88166 0.91928 0.92322 1.44784 1.32830 1.51316 1.06530 1.19437 1.04921 1.18531 0.94482 0.90218 1.25675 0.99840 1.02062 0.98293 1.70192 1.31728 1.43941 1.13770 0.85074 0.78200 0.78731 0.77428 1.21301 1.22090 1.19345 1.21758 0.95137 0.97345 0.84613 1.22480 0.97077 0.98351 0.93282 0.89559 1.21340 1.01116 0.92999 0.82549 1.45920 1.67952 1.12961 1.08598 1.17050 0.77036 0.86023 0.81684 1.90770 1.52919 1.14685 1.84721 1.23447 1.08440 0.91049 0.97355 1.22622 1.05214 1.02193 0.90241 1.24745 1.01492 0.85274 0.95686 1.20750 0.92657 1.05237 0.80929 1.61879 1.14536 1.39231 1.13181 1.22448 1.02242 1.01411 0.86035 1.22522 0.97121 0.91303 1.02319 1.84773 1.61569 1.35180 1.12908 1.74233 1.14202 1.13875 1.02040 0.90445 0.92470 0.93489 0.96368 0.98160 0.94358 0.96292 0.94023 0.89631 0.91321 0.75206 0.78971 0.86064 0.88546 0.94045 0.90619 0.90053 0.92563 0.90518 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.16 71.98 0.66 -3.16 16 2 C -0.10 -3.56 3.02 -9.61 -0.03 -3.59 16 3 H 0.08 2.70 8.04 -2.38 -0.02 2.68 16 4 C 0.19 9.51 4.98 86.73 0.43 9.94 16 5 N -0.63 -32.95 3.39 -692.00 -2.35 -35.30 16 6 C -0.24 -14.05 10.27 84.04 0.86 -13.19 16 7 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 8 C -0.07 -3.81 5.48 84.86 0.46 -3.34 16 9 N -0.95 -57.91 10.36 21.65 0.22 -57.69 16 10 Si 0.98 46.63 29.56 68.60 2.03 48.66 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.14 5.62 6.65 86.85 0.58 6.19 16 15 C -0.09 -3.04 2.50 -9.40 -0.02 -3.06 16 16 H 0.09 2.81 8.05 -2.39 -0.02 2.79 16 17 C 0.14 4.01 5.13 86.38 0.44 4.45 16 18 N -0.70 -19.20 5.50 -465.51 -2.56 -21.76 16 19 C 0.60 17.12 7.85 86.93 0.68 17.80 16 20 O -0.55 -18.35 16.95 -3.69 -0.06 -18.41 16 21 C -0.05 -1.12 7.19 42.96 0.31 -0.81 16 22 C -0.18 -3.29 9.59 22.60 0.22 -3.08 16 23 C -0.01 -0.12 6.34 25.01 0.16 0.04 16 24 C 0.13 1.05 5.52 85.56 0.47 1.53 16 25 N -0.56 -5.44 5.01 -953.47 -4.78 -10.22 16 26 C 0.03 0.13 9.57 127.69 1.22 1.35 16 27 C 0.02 0.15 9.29 127.69 1.19 1.33 16 28 O 0.13 2.75 11.18 71.92 0.80 3.55 16 29 N -0.34 -8.53 11.84 -49.52 -0.59 -9.12 16 30 H 0.08 1.84 8.10 -2.38 -0.02 1.82 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.02 1.01 6.92 -2.39 -0.02 0.99 16 34 H 0.00 0.01 7.61 -2.39 -0.02 -0.01 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.02 0.80 7.91 -2.39 -0.02 0.78 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.09 2.21 8.10 -2.39 -0.02 2.20 16 39 H 0.07 2.03 7.96 -2.39 -0.02 2.01 16 40 H 0.41 10.80 8.23 -92.71 -0.76 10.04 16 41 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.12 0.57 8.06 -2.39 -0.02 0.55 16 43 H 0.10 0.39 8.12 -2.39 -0.02 0.38 16 44 H 0.04 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.08 0.37 8.12 -2.38 -0.02 0.35 16 46 H 0.08 0.29 8.12 -2.39 -0.02 0.27 16 47 H 0.06 0.72 6.35 -2.39 -0.02 0.71 16 48 H 0.08 0.66 8.12 -2.38 -0.02 0.64 16 49 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -73.50 400.29 0.54 -72.97 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.18 Total: 14.90 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 7.63 Total: 12.40 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -10.05 Total: -134.08 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.74 Total: -14.86 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.50 0.54 -72.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092753350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.872 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds