Wall clock time and date at job start Tue Mar 31 2020 19:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99934 * 2 1 4 4 C 1.53006 * 109.46612 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46755 * 179.97438 * 4 3 2 6 6 C 1.35037 * 124.88313 * 125.02743 * 5 4 3 7 7 C 1.35363 * 107.23157 * 179.72539 * 6 5 4 8 8 C 1.41505 * 105.49866 * 0.41519 * 7 6 5 9 9 C 1.47713 * 126.51512 * 179.84332 * 8 7 6 10 10 O 1.21562 * 120.00314 * 359.71151 * 9 8 7 11 11 N 1.34773 * 119.99823 * 179.71386 * 9 8 7 12 12 C 1.46502 * 120.00402 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47471 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.78123 * 51.75530 * 13 12 11 15 15 C 1.54324 * 110.71832 * 288.51656 * 13 12 11 16 16 N 1.47017 * 107.27525 * 219.44392 * 15 13 12 17 17 C 1.36938 * 125.64989 * 178.89435 * 16 15 13 18 18 H 1.07992 * 120.00364 * 341.52442 * 17 16 15 19 19 C 1.38817 * 119.99454 * 161.51996 * 17 16 15 20 20 N 1.31618 * 119.99422 * 157.64618 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 337.64192 * 19 17 16 22 22 H 1.48505 * 109.46972 * 84.54118 * 21 19 17 23 23 H 1.48500 * 109.46976 * 204.53562 * 21 19 17 24 24 H 1.48499 * 109.47333 * 324.53719 * 21 19 17 25 25 C 1.47428 * 108.69896 * 358.94402 * 16 15 13 26 26 C 1.54904 * 104.83364 * 24.12890 * 25 16 15 27 27 H 1.09006 * 111.03986 * 81.07927 * 26 25 16 28 28 C 1.52999 * 111.00392 * 204.91537 * 26 25 16 29 29 N 1.28465 * 124.88771 * 305.02784 * 5 4 3 30 30 H 1.09000 * 109.46690 * 59.99925 * 1 2 3 31 31 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47014 * 300.00633 * 1 2 3 33 33 H 1.08994 * 109.47053 * 60.00371 * 3 2 1 34 34 H 1.08998 * 109.47423 * 299.99376 * 3 2 1 35 35 H 1.09003 * 109.46934 * 60.00594 * 4 3 2 36 36 H 1.08996 * 109.47462 * 299.99644 * 4 3 2 37 37 H 1.08001 * 126.38419 * 0.02562 * 6 5 4 38 38 H 1.07992 * 127.25176 * 180.25678 * 7 6 5 39 39 H 0.97002 * 120.00328 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.47004 * 59.99366 * 12 11 9 41 41 H 1.08997 * 109.46505 * 300.00238 * 12 11 9 42 42 H 1.09007 * 109.88414 * 338.86742 * 15 13 12 43 43 H 1.09004 * 109.87900 * 100.02798 * 15 13 12 44 44 H 0.97008 * 119.99862 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.36715 * 265.28355 * 25 16 15 46 46 H 1.09009 * 110.36582 * 142.96352 * 25 16 15 47 47 H 1.09003 * 109.47220 * 172.19779 * 28 26 25 48 48 H 1.09002 * 109.47200 * 292.19105 * 28 26 25 49 49 H 1.09001 * 109.47189 * 52.19525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0260 2.9704 0.9072 7 6 5.3402 4.2423 0.5668 8 6 4.5730 4.5252 -0.5880 9 6 4.5585 5.7938 -1.3445 10 8 5.2511 6.7251 -0.9830 11 7 3.7772 5.9188 -2.4356 12 6 3.7631 7.1768 -3.1863 13 6 2.8003 7.0542 -4.3690 14 1 1.8246 6.6983 -4.0381 15 6 3.3825 6.1226 -5.4528 16 7 3.0544 6.7133 -6.7585 17 6 3.4114 6.2026 -7.9779 18 1 4.2130 5.4824 -8.0480 19 6 2.7428 6.6108 -9.1239 20 7 3.3216 6.4939 -10.3002 21 14 1.0218 7.3259 -8.9966 22 1 1.1099 8.7766 -8.6914 23 1 0.3094 7.1337 -10.2853 24 1 0.2781 6.6361 -7.9121 25 6 2.2783 7.9471 -6.5374 26 6 2.6673 8.4102 -5.1113 27 1 3.6164 8.9461 -5.1192 28 6 1.5617 9.2679 -4.4926 29 7 3.8781 3.4396 -0.8635 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4212 2.4151 1.7450 38 1 6.0292 4.9029 1.0719 39 1 3.2248 5.1756 -2.7243 40 1 4.7664 7.3913 -3.5547 41 1 3.4352 7.9857 -2.5335 42 1 4.4643 6.0522 -5.3390 43 1 2.9338 5.1326 -5.3706 44 1 2.8546 6.7795 -11.1011 45 1 1.2098 7.7378 -6.5902 46 1 2.5538 8.7051 -7.2708 47 1 1.7964 9.4639 -3.4464 48 1 1.4899 10.2125 -5.0319 49 1 0.6111 8.7386 -4.5588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092812622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:16 Heat of formation + Delta-G solvation = 24.752660 kcal Electronic energy + Delta-G solvation = -28872.219038 eV Core-core repulsion = 24837.245843 eV Total energy + Delta-G solvation = -4034.973195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.94399 -39.53026 -38.50841 -38.20533 -34.74714 -34.34023 -32.99690 -31.12099 -31.08986 -30.23693 -29.42864 -26.97149 -26.13889 -25.74397 -24.42614 -22.89460 -22.04251 -21.69615 -20.62111 -20.02285 -19.49258 -18.20728 -17.32653 -16.85384 -16.69420 -16.46262 -16.05880 -15.92903 -15.32549 -15.21996 -14.99296 -14.61624 -14.26669 -13.96601 -13.68896 -13.61861 -13.29502 -13.20677 -12.92891 -12.85619 -12.58194 -12.46830 -12.16815 -12.01622 -11.87303 -11.48548 -11.36200 -11.17223 -11.05971 -10.88505 -10.54773 -10.34034 -10.28189 -10.18486 -9.92567 -9.77992 -9.56197 -9.41342 -9.35923 -8.94926 -8.65288 -7.01058 -5.92088 -3.21953 1.37774 1.87640 1.93366 3.13840 3.32871 3.36276 3.39763 3.49064 3.51522 3.99206 4.29013 4.44021 4.49083 4.56987 4.62900 4.80800 4.82861 4.87594 4.96170 5.02123 5.04991 5.07306 5.17465 5.18862 5.21176 5.40047 5.45125 5.51377 5.55897 5.66359 5.78730 5.93653 5.96478 6.08688 6.11493 6.14515 6.26720 6.37835 6.40014 6.46216 6.50547 6.56619 6.68217 6.80572 6.83559 7.42639 7.71389 7.74756 8.22412 8.34123 8.86681 9.71761 10.21190 11.24238 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.002662 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.220694 B =10515.623391 C =11895.221034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.282 5.282 6 C -0.016 4.016 7 C -0.178 4.178 8 C -0.010 4.010 9 C 0.602 3.398 10 O -0.536 6.536 11 N -0.712 5.712 12 C 0.133 3.867 13 C -0.111 4.111 14 H 0.081 0.919 15 C 0.140 3.860 16 N -0.609 5.609 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.117 3.883 26 C -0.096 4.096 27 H 0.083 0.917 28 C -0.141 4.141 29 N -0.260 5.260 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.407 0.593 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.026 0.974 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -9.345 26.717 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.205 4.205 8 C -0.171 4.171 9 C 0.386 3.614 10 O -0.411 6.411 11 N -0.363 5.363 12 C 0.009 3.991 13 C -0.131 4.131 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.231 1.231 24 H -0.203 1.203 25 C -0.009 4.009 26 C -0.116 4.116 27 H 0.101 0.899 28 C -0.199 4.199 29 N -0.095 5.095 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.243 0.757 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.406 -9.432 25.930 27.801 hybrid contribution -0.957 0.370 0.348 1.083 sum -4.363 -9.061 26.278 28.137 Atomic orbital electron populations 1.22806 0.79663 1.03260 1.00564 1.87773 1.20798 1.26588 1.95636 1.22645 0.92084 0.85718 1.02392 1.21699 0.93134 0.78467 1.06332 1.45315 1.31321 1.11537 1.19008 1.22890 0.97870 0.96671 0.98383 1.21800 1.04361 0.96030 0.98356 1.22028 1.01536 0.94020 0.99528 1.16861 0.79759 0.84859 0.79901 1.90791 1.42404 1.39350 1.68584 1.45907 1.45200 1.17404 1.27765 1.21464 1.00402 0.85112 0.92088 1.22516 0.98592 0.97697 0.94261 0.90086 1.21413 0.97699 0.94479 0.84922 1.44754 1.64264 1.22912 1.01653 1.18646 1.13420 1.23856 0.80830 0.89106 1.24994 0.98460 0.99459 0.94833 1.69851 1.36905 1.50601 0.97981 0.86967 0.87207 0.78837 0.75650 1.21142 1.23117 1.20337 1.22023 0.94865 0.89849 0.94115 1.22311 0.99341 0.94139 0.95850 0.89871 1.21731 0.98320 0.99688 1.00119 1.73509 1.22855 0.97679 1.15499 0.93402 0.89055 0.93803 0.92519 0.91082 0.87691 0.86910 0.79954 0.81855 0.75746 0.90766 0.91253 0.94679 0.95320 0.92748 0.95636 0.92299 0.92703 0.92540 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.92 10.70 -35.23 -0.38 -3.29 16 3 C 0.05 0.33 6.04 37.16 0.22 0.56 16 4 C 0.12 0.74 6.77 -4.04 -0.03 0.71 16 5 N -0.28 -2.46 3.41 -61.32 -0.21 -2.66 16 6 C -0.02 -0.12 11.40 -17.17 -0.20 -0.32 16 7 C -0.18 -1.84 10.81 -39.36 -0.43 -2.27 16 8 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 9 C 0.60 8.90 7.82 -12.39 -0.10 8.81 16 10 O -0.54 -9.37 16.93 5.31 0.09 -9.28 16 11 N -0.71 -9.73 5.47 -61.29 -0.34 -10.07 16 12 C 0.13 1.88 5.02 -4.04 -0.02 1.86 16 13 C -0.11 -1.74 2.43 -88.79 -0.22 -1.95 16 14 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 15 C 0.14 2.77 6.75 -3.07 -0.02 2.75 16 16 N -0.61 -14.89 3.21 -170.07 -0.55 -15.44 16 17 C -0.24 -6.94 10.57 -15.06 -0.16 -7.09 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 20 N -0.91 -28.44 13.97 55.49 0.78 -27.67 16 21 Si 0.88 22.84 24.27 -169.99 -4.13 18.71 16 22 H -0.28 -7.05 6.49 56.52 0.37 -6.69 16 23 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.28 -7.06 6.66 56.52 0.38 -6.69 16 25 C 0.12 2.54 4.16 -2.53 -0.01 2.53 16 26 C -0.10 -1.60 3.09 -88.47 -0.27 -1.87 16 27 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 28 C -0.14 -1.90 9.31 37.16 0.35 -1.56 16 29 N -0.26 -3.01 11.36 33.42 0.38 -2.63 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.36 8.04 -51.93 -0.42 -0.06 16 37 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.41 5.17 8.19 -40.82 -0.33 4.83 16 40 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 41 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.04 0.71 7.68 -51.92 -0.40 0.31 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.03 0.58 5.42 -51.93 -0.28 0.30 16 46 H 0.06 1.38 6.63 -51.92 -0.34 1.04 16 47 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -35.76 399.12 -6.91 -42.67 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.13 Total: 0.42 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.45 Total: 3.23 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.07 Total: -58.47 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.29 Total: -12.58 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.13 Total: 18.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.76 -6.91 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092812622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.419 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds