Wall clock time and date at job start Tue Mar 31 2020 19:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99934 * 2 1 4 4 C 1.53006 * 109.46612 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46755 * 179.97438 * 4 3 2 6 6 C 1.35037 * 124.88313 * 125.02743 * 5 4 3 7 7 C 1.35363 * 107.23157 * 179.72539 * 6 5 4 8 8 C 1.41505 * 105.49866 * 0.41519 * 7 6 5 9 9 C 1.47713 * 126.51512 * 179.84332 * 8 7 6 10 10 O 1.21562 * 120.00314 * 359.71151 * 9 8 7 11 11 N 1.34773 * 119.99823 * 179.71386 * 9 8 7 12 12 C 1.46502 * 120.00402 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47471 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.78123 * 51.75530 * 13 12 11 15 15 C 1.54324 * 110.71832 * 288.51656 * 13 12 11 16 16 N 1.47017 * 107.27525 * 219.44392 * 15 13 12 17 17 C 1.36938 * 125.64989 * 178.89435 * 16 15 13 18 18 H 1.07992 * 120.00364 * 341.52442 * 17 16 15 19 19 C 1.38817 * 119.99454 * 161.51996 * 17 16 15 20 20 N 1.31618 * 119.99422 * 157.64618 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 337.64192 * 19 17 16 22 22 H 1.48505 * 109.46972 * 84.54118 * 21 19 17 23 23 H 1.48500 * 109.46976 * 204.53562 * 21 19 17 24 24 H 1.48499 * 109.47333 * 324.53719 * 21 19 17 25 25 C 1.47428 * 108.69896 * 358.94402 * 16 15 13 26 26 C 1.54904 * 104.83364 * 24.12890 * 25 16 15 27 27 H 1.09006 * 111.03986 * 81.07927 * 26 25 16 28 28 C 1.52999 * 111.00392 * 204.91537 * 26 25 16 29 29 N 1.28465 * 124.88771 * 305.02784 * 5 4 3 30 30 H 1.09000 * 109.46690 * 59.99925 * 1 2 3 31 31 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47014 * 300.00633 * 1 2 3 33 33 H 1.08994 * 109.47053 * 60.00371 * 3 2 1 34 34 H 1.08998 * 109.47423 * 299.99376 * 3 2 1 35 35 H 1.09003 * 109.46934 * 60.00594 * 4 3 2 36 36 H 1.08996 * 109.47462 * 299.99644 * 4 3 2 37 37 H 1.08001 * 126.38419 * 0.02562 * 6 5 4 38 38 H 1.07992 * 127.25176 * 180.25678 * 7 6 5 39 39 H 0.97002 * 120.00328 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.47004 * 59.99366 * 12 11 9 41 41 H 1.08997 * 109.46505 * 300.00238 * 12 11 9 42 42 H 1.09007 * 109.88414 * 338.86742 * 15 13 12 43 43 H 1.09004 * 109.87900 * 100.02798 * 15 13 12 44 44 H 0.97008 * 119.99862 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.36715 * 265.28355 * 25 16 15 46 46 H 1.09009 * 110.36582 * 142.96352 * 25 16 15 47 47 H 1.09003 * 109.47220 * 172.19779 * 28 26 25 48 48 H 1.09002 * 109.47200 * 292.19105 * 28 26 25 49 49 H 1.09001 * 109.47189 * 52.19525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0260 2.9704 0.9072 7 6 5.3402 4.2423 0.5668 8 6 4.5730 4.5252 -0.5880 9 6 4.5585 5.7938 -1.3445 10 8 5.2511 6.7251 -0.9830 11 7 3.7772 5.9188 -2.4356 12 6 3.7631 7.1768 -3.1863 13 6 2.8003 7.0542 -4.3690 14 1 1.8246 6.6983 -4.0381 15 6 3.3825 6.1226 -5.4528 16 7 3.0544 6.7133 -6.7585 17 6 3.4114 6.2026 -7.9779 18 1 4.2130 5.4824 -8.0480 19 6 2.7428 6.6108 -9.1239 20 7 3.3216 6.4939 -10.3002 21 14 1.0218 7.3259 -8.9966 22 1 1.1099 8.7766 -8.6914 23 1 0.3094 7.1337 -10.2853 24 1 0.2781 6.6361 -7.9121 25 6 2.2783 7.9471 -6.5374 26 6 2.6673 8.4102 -5.1113 27 1 3.6164 8.9461 -5.1192 28 6 1.5617 9.2679 -4.4926 29 7 3.8781 3.4396 -0.8635 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4212 2.4151 1.7450 38 1 6.0292 4.9029 1.0719 39 1 3.2248 5.1756 -2.7243 40 1 4.7664 7.3913 -3.5547 41 1 3.4352 7.9857 -2.5335 42 1 4.4643 6.0522 -5.3390 43 1 2.9338 5.1326 -5.3706 44 1 2.8546 6.7795 -11.1011 45 1 1.2098 7.7378 -6.5902 46 1 2.5538 8.7051 -7.2708 47 1 1.7964 9.4639 -3.4464 48 1 1.4899 10.2125 -5.0319 49 1 0.6111 8.7386 -4.5588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092812622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:15 Heat of formation + Delta-G solvation = -2.153453 kcal Electronic energy + Delta-G solvation = -28873.385775 eV Core-core repulsion = 24837.245843 eV Total energy + Delta-G solvation = -4036.139931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.67461 -40.74794 -39.69880 -38.98997 -36.14240 -35.01583 -34.73369 -32.98125 -31.92799 -31.26490 -30.35760 -27.99456 -27.45806 -26.98844 -25.38392 -24.13953 -23.11247 -22.44342 -22.07461 -21.34413 -20.66007 -19.08797 -18.80803 -18.00867 -17.42804 -17.26529 -17.04117 -16.91454 -16.84174 -16.40055 -16.12615 -15.59985 -15.29784 -15.17580 -14.96615 -14.73752 -14.56641 -14.31812 -14.20292 -14.06594 -13.90617 -13.52173 -13.28783 -13.01509 -12.85331 -12.69571 -12.63061 -12.51900 -12.34205 -12.28177 -11.90570 -11.78070 -11.69042 -11.60370 -11.36170 -11.14920 -10.81473 -10.78287 -10.37560 -10.14593 -9.98482 -9.07333 -8.20295 -5.47008 0.49366 1.18200 1.29140 1.32359 1.36842 1.46476 2.13250 2.36780 2.39777 2.78322 3.00772 3.27001 3.38420 3.63107 3.74796 3.77426 3.78476 3.82331 3.99066 4.13356 4.21197 4.27755 4.34163 4.44110 4.47522 4.48830 4.59271 4.61879 4.66370 4.70585 4.72839 4.76367 4.79089 4.81022 4.83670 4.91032 5.02083 5.07045 5.19595 5.31376 5.33224 5.39305 5.49187 5.65724 5.81389 6.00958 6.07797 6.40446 6.74248 6.86696 7.13721 7.51691 8.08566 8.99877 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.002662 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.220694 B =10515.623391 C =11895.221034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.277 5.277 6 C 0.009 3.991 7 C -0.200 4.200 8 C -0.040 4.040 9 C 0.600 3.400 10 O -0.570 6.570 11 N -0.707 5.707 12 C 0.142 3.858 13 C -0.091 4.091 14 H 0.101 0.899 15 C 0.136 3.864 16 N -0.629 5.629 17 C -0.238 4.238 18 H 0.054 0.946 19 C -0.038 4.038 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.267 1.267 23 H -0.307 1.307 24 H -0.268 1.268 25 C 0.108 3.892 26 C -0.087 4.087 27 H 0.084 0.916 28 C -0.136 4.136 29 N -0.278 5.278 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.231 0.769 38 H 0.167 0.833 39 H 0.412 0.588 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.025 0.975 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.028 0.972 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -9.650 30.141 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.228 4.228 8 C -0.199 4.199 9 C 0.386 3.614 10 O -0.448 6.448 11 N -0.358 5.358 12 C 0.018 3.982 13 C -0.110 4.110 14 H 0.120 0.880 15 C 0.012 3.988 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.072 0.928 19 C -0.232 4.232 20 N -0.604 5.604 21 Si 0.777 3.223 22 H -0.192 1.192 23 H -0.236 1.236 24 H -0.193 1.193 25 C -0.016 4.016 26 C -0.107 4.107 27 H 0.102 0.898 28 C -0.193 4.193 29 N -0.115 5.115 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.167 0.833 37 H 0.247 0.753 38 H 0.185 0.815 39 H 0.248 0.752 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.996 -9.740 29.390 31.362 hybrid contribution -0.382 0.317 -0.674 0.837 sum -5.378 -9.423 28.716 30.697 Atomic orbital electron populations 1.22960 0.78795 1.04252 1.00881 1.87748 1.21846 1.26850 1.95676 1.22583 0.92709 0.85460 1.01773 1.21970 0.92481 0.77214 1.08154 1.45632 1.30974 1.11751 1.18355 1.23534 0.95871 0.95665 0.98262 1.22032 1.04981 0.97622 0.98186 1.21886 1.03496 0.93787 1.00776 1.17170 0.79047 0.85342 0.79823 1.90757 1.43786 1.40733 1.69568 1.45858 1.45097 1.17363 1.27494 1.21312 0.99168 0.85937 0.91746 1.22380 0.99493 0.96037 0.93109 0.88043 1.21558 0.97376 0.95569 0.84338 1.44869 1.64505 1.24485 1.01670 1.18574 1.12276 1.22717 0.83084 0.92771 1.25666 1.02144 1.01036 0.94389 1.69982 1.38470 1.53154 0.98830 0.85898 0.81768 0.79116 0.75480 1.19237 1.23575 1.19293 1.22168 0.94377 0.88158 0.96928 1.22270 1.00723 0.94956 0.92704 0.89791 1.21719 0.96982 0.99185 1.01424 1.73452 1.23308 0.98004 1.16712 0.93784 0.87813 0.92805 0.91973 0.92920 0.87730 0.83282 0.75280 0.81513 0.75165 0.92309 0.89545 0.95715 0.95164 0.92812 0.95438 0.94422 0.90088 0.91873 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.32 10.70 -148.98 -1.59 -6.92 16 3 C 0.05 0.62 6.04 71.98 0.44 1.05 16 4 C 0.12 1.10 6.77 86.38 0.58 1.69 16 5 N -0.28 -4.16 3.41 -347.93 -1.19 -5.35 16 6 C 0.01 0.11 11.40 83.54 0.95 1.06 16 7 C -0.20 -3.87 10.81 22.41 0.24 -3.63 16 8 C -0.04 -1.01 7.13 42.46 0.30 -0.70 16 9 C 0.60 17.65 7.82 86.75 0.68 18.32 16 10 O -0.57 -20.01 16.93 -3.91 -0.07 -20.08 16 11 N -0.71 -18.82 5.47 -466.11 -2.55 -21.37 16 12 C 0.14 3.82 5.02 86.38 0.43 4.26 16 13 C -0.09 -2.67 2.43 -9.61 -0.02 -2.69 16 14 H 0.10 2.63 8.04 -2.39 -0.02 2.61 16 15 C 0.14 5.37 6.75 86.73 0.59 5.95 16 16 N -0.63 -31.00 3.21 -691.97 -2.22 -33.22 16 17 C -0.24 -14.21 10.57 84.03 0.89 -13.32 16 18 H 0.05 3.53 8.06 -2.91 -0.02 3.51 16 19 C -0.04 -2.30 5.43 84.86 0.46 -1.84 16 20 N -0.96 -62.02 13.97 21.65 0.30 -61.72 16 21 Si 0.95 47.70 24.27 68.60 1.66 49.36 16 22 H -0.27 -12.52 6.49 99.48 0.65 -11.88 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 24 H -0.27 -12.88 6.66 99.48 0.66 -12.22 16 25 C 0.11 4.57 4.16 86.85 0.36 4.94 16 26 C -0.09 -2.68 3.09 -9.40 -0.03 -2.71 16 27 H 0.08 2.60 8.05 -2.38 -0.02 2.58 16 28 C -0.14 -3.15 9.31 71.98 0.67 -2.48 16 29 N -0.28 -6.14 11.36 -48.17 -0.55 -6.69 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.15 0.30 8.04 -2.39 -0.02 0.28 16 37 H 0.23 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.41 10.15 8.19 -92.71 -0.76 9.39 16 40 H 0.06 1.79 7.94 -2.38 -0.02 1.78 16 41 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 42 H 0.02 1.02 7.68 -2.38 -0.02 1.00 16 43 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 44 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 45 H 0.03 1.18 5.42 -2.39 -0.01 1.17 16 46 H 0.04 1.74 6.63 -2.38 -0.02 1.72 16 47 H 0.08 1.50 8.10 -2.39 -0.02 1.49 16 48 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 Total: -1.00 -81.17 399.12 1.68 -79.50 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.08 Total: 15.05 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.79 Total: 11.41 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -6.20 Total: -128.33 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.66 Total: -26.99 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.66 Total: 49.36 kcal Total: -81.17 1.68 -79.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092812622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.342 kcal (2) G-P(sol) polarization free energy of solvation -81.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds