Wall clock time and date at job start Tue Mar 31 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47045 * 2 1 4 4 O 1.42892 * 109.47542 * 240.00279 * 2 1 3 5 5 C 1.42899 * 114.00483 * 89.99593 * 4 2 1 6 6 C 1.50697 * 109.47650 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00295 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00210 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47526 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61708 * 274.14424 * 10 9 8 12 12 C 1.53953 * 87.01861 * 220.04611 * 11 10 9 13 13 N 1.46501 * 113.74456 * 139.94221 * 12 11 10 14 14 C 1.36944 * 119.99960 * 107.39946 * 13 12 11 15 15 H 1.07998 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99866 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46627 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47173 * 119.99605 * 18 16 14 21 21 H 1.48497 * 109.47362 * 240.00085 * 18 16 14 22 22 C 1.53775 * 113.61894 * 176.53236 * 10 9 8 23 23 C 1.50700 * 109.47181 * 119.99451 * 2 1 3 24 24 N 1.30502 * 125.64425 * 75.28055 * 23 2 1 25 25 C 1.34127 * 109.25683 * 180.14781 * 24 23 2 26 26 C 1.34672 * 108.01948 * 359.61488 * 25 24 23 27 27 N 1.35041 * 125.65474 * 255.00180 * 23 2 1 28 28 C 1.46499 * 126.39624 * 0.02562 * 27 23 2 29 29 H 1.08995 * 109.47234 * 299.99704 * 1 2 3 30 30 H 1.09000 * 109.46968 * 60.00631 * 1 2 3 31 31 H 1.09002 * 109.46580 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46957 * 300.00572 * 5 4 2 33 33 H 1.09001 * 109.46958 * 60.00319 * 5 4 2 34 34 H 0.96995 * 120.00156 * 359.97438 * 8 6 5 35 35 H 1.08993 * 109.47357 * 300.00562 * 9 8 6 36 36 H 1.09009 * 109.46859 * 60.00417 * 9 8 6 37 37 H 1.08998 * 112.84663 * 45.33197 * 10 9 8 38 38 H 1.09004 * 113.61334 * 334.56713 * 11 10 9 39 39 H 1.09000 * 113.62163 * 105.46477 * 11 10 9 40 40 H 1.09004 * 113.53638 * 270.80519 * 12 11 10 41 41 H 0.96999 * 120.00263 * 287.40623 * 13 12 11 42 42 H 0.96998 * 120.00454 * 180.02562 * 17 16 14 43 43 H 1.08996 * 113.61331 * 254.53228 * 22 10 9 44 44 H 1.09004 * 113.61249 * 25.43502 * 22 10 9 45 45 H 1.08002 * 125.99481 * 179.88589 * 25 24 23 46 46 H 1.07997 * 126.59503 * 180.24939 * 26 25 24 47 47 H 1.09002 * 109.47096 * 269.97154 * 28 27 23 48 48 H 1.08994 * 109.47272 * 29.97187 * 28 27 23 49 49 H 1.09002 * 109.47111 * 149.97482 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1667 5 6 2.2001 0.1830 -2.2940 6 6 2.7004 -0.6283 -3.4613 7 8 2.8744 -1.8224 -3.3397 8 7 2.9554 -0.0267 -4.6401 9 6 3.4423 -0.8153 -5.7747 10 6 3.6496 0.1017 -6.9817 11 6 2.3771 0.3163 -7.8182 12 6 3.2764 0.2189 -9.0640 13 7 2.6744 -0.5316 -10.1688 14 6 2.2299 0.1288 -11.2831 15 1 2.3228 1.2028 -11.3473 16 6 1.6591 -0.5823 -12.3297 17 7 1.5454 -1.8912 -12.2513 18 14 1.0534 0.3183 -13.8500 19 1 1.2952 1.7750 -13.6916 20 1 1.7843 -0.1782 -15.0436 21 1 -0.4011 0.0745 -14.0233 22 6 4.2418 -0.6158 -8.2061 23 6 2.0324 -0.7103 1.2305 24 7 2.0318 -2.0020 1.4165 25 6 2.5484 -2.2753 2.6238 26 6 2.8896 -1.1092 3.2046 27 7 2.5625 -0.1160 2.3211 28 6 2.7515 1.3228 2.5216 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2538 0.6547 -2.5588 33 1 2.9320 0.9514 -2.0450 34 1 2.8166 0.9283 -4.7373 35 1 4.3883 -1.2874 -5.5099 36 1 2.7102 -1.5835 -6.0241 37 1 4.1654 1.0273 -6.7263 38 1 1.6572 -0.4979 -7.7346 39 1 1.9246 1.2984 -7.6808 40 1 3.6892 1.1773 -9.3788 41 1 2.5905 -1.4962 -10.1110 42 1 1.1468 -2.3882 -12.9828 43 1 5.2925 -0.3852 -8.3815 44 1 4.0326 -1.6854 -8.2288 45 1 2.6733 -3.2585 3.0529 46 1 3.3359 -0.9819 4.1798 47 1 3.7345 1.6151 2.1520 48 1 1.9815 1.8697 1.9776 49 1 2.6794 1.5542 3.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100927126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:53 Heat of formation + Delta-G solvation = 18.466145 kcal Electronic energy + Delta-G solvation = -27800.082256 eV Core-core repulsion = 23764.836457 eV Total energy + Delta-G solvation = -4035.245798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46132 -39.94149 -38.68082 -37.91788 -34.65991 -34.44732 -33.29241 -32.66356 -30.39366 -29.06270 -28.87765 -27.47289 -26.45928 -25.08903 -24.00109 -23.70476 -21.72208 -21.06349 -20.75870 -20.18406 -19.07086 -17.91746 -17.23349 -17.10570 -16.90678 -16.41563 -16.10223 -15.74660 -15.21422 -14.96396 -14.77009 -14.59867 -14.25789 -13.90785 -13.74025 -13.56660 -13.44910 -13.26804 -13.22317 -13.04014 -12.89784 -12.54179 -12.39943 -11.89366 -11.80766 -11.47624 -11.39113 -11.22964 -10.85497 -10.51994 -10.25649 -10.23174 -10.12476 -10.10959 -9.96945 -9.82957 -9.79073 -9.48128 -9.02851 -8.87213 -8.77242 -6.96150 -5.78237 -3.07273 1.57191 2.16482 2.56402 2.67550 2.94084 3.42336 3.47583 3.50257 3.64290 3.95362 4.14507 4.25703 4.47712 4.54523 4.58120 4.60477 4.66447 4.73087 4.78236 4.87232 4.98490 5.01853 5.07208 5.18346 5.23415 5.30096 5.36204 5.46812 5.50732 5.78398 5.83077 5.85522 5.87673 5.93924 6.09366 6.25670 6.31468 6.36123 6.39147 6.44558 6.58262 6.61795 6.76977 6.82783 7.11429 7.44444 7.69225 7.83379 8.18989 8.40217 9.51286 10.09838 10.43866 11.44137 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.001529 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.913487 B =18303.634189 C =18384.306513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.073 0.927 4 O -0.334 6.334 5 C 0.041 3.959 6 C 0.509 3.491 7 O -0.514 6.514 8 N -0.725 5.725 9 C 0.134 3.866 10 C -0.127 4.127 11 C -0.161 4.161 12 C 0.166 3.834 13 N -0.713 5.713 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.142 4.142 23 C 0.201 3.799 24 N -0.456 5.456 25 C -0.028 4.028 26 C -0.056 4.056 27 N -0.458 5.458 28 C 0.067 3.933 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 11.370 33.609 35.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.117 3.883 3 H 0.091 0.909 4 O -0.251 6.251 5 C -0.039 4.039 6 C 0.293 3.707 7 O -0.388 6.388 8 N -0.378 5.378 9 C 0.011 3.989 10 C -0.146 4.146 11 C -0.202 4.202 12 C 0.053 3.947 13 N -0.351 5.351 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.182 4.182 23 C -0.062 4.062 24 N -0.174 5.174 25 C -0.177 4.177 26 C -0.189 4.189 27 N -0.143 5.143 28 C -0.075 4.075 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.189 0.811 46 H 0.194 0.806 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.686 9.953 32.957 34.532 hybrid contribution -0.122 1.506 -0.084 1.513 sum 2.564 11.459 32.873 34.907 Atomic orbital electron populations 1.22252 0.93468 1.04569 1.02369 1.20028 0.94155 0.92951 0.81152 0.90931 1.88232 1.86381 1.32477 1.17986 1.22331 1.01401 0.93070 0.87128 1.20108 0.78553 0.88455 0.83542 1.90780 1.50217 1.14867 1.82980 1.45910 1.68384 1.12316 1.11202 1.21449 0.99445 0.93979 0.84042 1.22634 1.00312 0.98762 0.92878 1.23978 0.96232 1.01083 0.98937 1.21550 0.91716 0.94871 0.86527 1.42423 1.70377 1.06587 1.15673 1.19349 1.32216 0.91754 0.94260 0.91045 1.24775 1.01844 0.95563 0.98750 1.69672 1.50172 1.05158 1.32911 0.86120 0.78209 0.78622 0.83237 1.20554 1.21845 1.21864 1.23444 0.99466 1.00531 0.94763 1.22792 1.03414 0.89242 0.90710 1.70308 1.18682 1.11790 1.16661 1.22440 1.04390 0.98332 0.92501 1.22734 1.09696 0.88197 0.98225 1.45263 1.46521 1.07658 1.14836 1.22099 1.03477 0.77737 1.04222 0.91560 0.91183 0.90229 0.89929 0.90411 0.76677 0.91697 0.91078 0.89405 0.90314 0.92789 0.90710 0.78040 0.93479 0.91987 0.90052 0.81097 0.80635 0.90288 0.89492 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.51 37.16 0.35 -0.88 16 2 C 0.18 1.54 2.99 -27.88 -0.08 1.45 16 3 H 0.07 0.37 6.72 -51.93 -0.35 0.02 16 4 O -0.33 -4.13 9.50 -55.14 -0.52 -4.65 16 5 C 0.04 0.37 6.23 36.00 0.22 0.59 16 6 C 0.51 6.65 7.91 -10.99 -0.09 6.56 16 7 O -0.51 -9.56 16.50 -14.36 -0.24 -9.79 16 8 N -0.72 -7.90 5.56 -60.29 -0.33 -8.24 16 9 C 0.13 1.76 5.50 -4.04 -0.02 1.74 16 10 C -0.13 -1.64 3.75 -89.81 -0.34 -1.98 16 11 C -0.16 -2.60 7.45 -25.83 -0.19 -2.79 16 12 C 0.17 3.16 4.48 -67.03 -0.30 2.86 16 13 N -0.71 -17.74 5.41 -52.55 -0.28 -18.03 16 14 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.14 -2.25 7.40 -25.92 -0.19 -2.44 16 23 C 0.20 2.14 6.79 -155.42 -1.06 1.08 16 24 N -0.46 -6.18 11.25 -10.81 -0.12 -6.31 16 25 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 26 C -0.06 -0.42 11.58 -16.56 -0.19 -0.61 16 27 N -0.46 -3.44 3.15 -121.28 -0.38 -3.82 16 28 C 0.07 0.18 10.75 59.85 0.64 0.82 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.40 3.04 8.47 -40.82 -0.35 2.69 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.09 7.87 -51.92 -0.41 0.68 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 41 H 0.39 10.27 7.92 -40.82 -0.32 9.95 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 45 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.09 0.10 7.33 -51.93 -0.38 -0.28 16 49 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 410.58 15.07 6.19 6.19 Total: -1.00 -38.94 410.58 -9.76 -48.70 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.07 Total: 7.65 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.70 Total: -1.46 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.40 Total: -63.88 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.76 Total: -14.44 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -38.94 -9.76 -48.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100927126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.171 kcal (2) G-P(sol) polarization free energy of solvation -38.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds