Wall clock time and date at job start Tue Mar 31 2020 19:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47045 * 2 1 4 4 O 1.42892 * 109.47542 * 240.00279 * 2 1 3 5 5 C 1.42899 * 114.00483 * 89.99593 * 4 2 1 6 6 C 1.50697 * 109.47650 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00295 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00210 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47526 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61708 * 274.14424 * 10 9 8 12 12 C 1.53953 * 87.01861 * 220.04611 * 11 10 9 13 13 N 1.46501 * 113.74456 * 139.94221 * 12 11 10 14 14 C 1.36944 * 119.99960 * 107.39946 * 13 12 11 15 15 H 1.07998 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99866 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46627 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47173 * 119.99605 * 18 16 14 21 21 H 1.48497 * 109.47362 * 240.00085 * 18 16 14 22 22 C 1.53775 * 113.61894 * 176.53236 * 10 9 8 23 23 C 1.50700 * 109.47181 * 119.99451 * 2 1 3 24 24 N 1.30502 * 125.64425 * 75.28055 * 23 2 1 25 25 C 1.34127 * 109.25683 * 180.14781 * 24 23 2 26 26 C 1.34672 * 108.01948 * 359.61488 * 25 24 23 27 27 N 1.35041 * 125.65474 * 255.00180 * 23 2 1 28 28 C 1.46499 * 126.39624 * 0.02562 * 27 23 2 29 29 H 1.08995 * 109.47234 * 299.99704 * 1 2 3 30 30 H 1.09000 * 109.46968 * 60.00631 * 1 2 3 31 31 H 1.09002 * 109.46580 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46957 * 300.00572 * 5 4 2 33 33 H 1.09001 * 109.46958 * 60.00319 * 5 4 2 34 34 H 0.96995 * 120.00156 * 359.97438 * 8 6 5 35 35 H 1.08993 * 109.47357 * 300.00562 * 9 8 6 36 36 H 1.09009 * 109.46859 * 60.00417 * 9 8 6 37 37 H 1.08998 * 112.84663 * 45.33197 * 10 9 8 38 38 H 1.09004 * 113.61334 * 334.56713 * 11 10 9 39 39 H 1.09000 * 113.62163 * 105.46477 * 11 10 9 40 40 H 1.09004 * 113.53638 * 270.80519 * 12 11 10 41 41 H 0.96999 * 120.00263 * 287.40623 * 13 12 11 42 42 H 0.96998 * 120.00454 * 180.02562 * 17 16 14 43 43 H 1.08996 * 113.61331 * 254.53228 * 22 10 9 44 44 H 1.09004 * 113.61249 * 25.43502 * 22 10 9 45 45 H 1.08002 * 125.99481 * 179.88589 * 25 24 23 46 46 H 1.07997 * 126.59503 * 180.24939 * 26 25 24 47 47 H 1.09002 * 109.47096 * 269.97154 * 28 27 23 48 48 H 1.08994 * 109.47272 * 29.97187 * 28 27 23 49 49 H 1.09002 * 109.47111 * 149.97482 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1667 5 6 2.2001 0.1830 -2.2940 6 6 2.7004 -0.6283 -3.4613 7 8 2.8744 -1.8224 -3.3397 8 7 2.9554 -0.0267 -4.6401 9 6 3.4423 -0.8153 -5.7747 10 6 3.6496 0.1017 -6.9817 11 6 2.3771 0.3163 -7.8182 12 6 3.2764 0.2189 -9.0640 13 7 2.6744 -0.5316 -10.1688 14 6 2.2299 0.1288 -11.2831 15 1 2.3228 1.2028 -11.3473 16 6 1.6591 -0.5823 -12.3297 17 7 1.5454 -1.8912 -12.2513 18 14 1.0534 0.3183 -13.8500 19 1 1.2952 1.7750 -13.6916 20 1 1.7843 -0.1782 -15.0436 21 1 -0.4011 0.0745 -14.0233 22 6 4.2418 -0.6158 -8.2061 23 6 2.0324 -0.7103 1.2305 24 7 2.0318 -2.0020 1.4165 25 6 2.5484 -2.2753 2.6238 26 6 2.8896 -1.1092 3.2046 27 7 2.5625 -0.1160 2.3211 28 6 2.7515 1.3228 2.5216 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2538 0.6547 -2.5588 33 1 2.9320 0.9514 -2.0450 34 1 2.8166 0.9283 -4.7373 35 1 4.3883 -1.2874 -5.5099 36 1 2.7102 -1.5835 -6.0241 37 1 4.1654 1.0273 -6.7263 38 1 1.6572 -0.4979 -7.7346 39 1 1.9246 1.2984 -7.6808 40 1 3.6892 1.1773 -9.3788 41 1 2.5905 -1.4962 -10.1110 42 1 1.1468 -2.3882 -12.9828 43 1 5.2925 -0.3852 -8.3815 44 1 4.0326 -1.6854 -8.2288 45 1 2.6733 -3.2585 3.0529 46 1 3.3359 -0.9819 4.1798 47 1 3.7345 1.6151 2.1520 48 1 1.9815 1.8697 1.9776 49 1 2.6794 1.5542 3.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100927126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:52 Heat of formation + Delta-G solvation = -10.058182 kcal Electronic energy + Delta-G solvation = -27801.319163 eV Core-core repulsion = 23764.836457 eV Total energy + Delta-G solvation = -4036.482706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.05697 -40.96579 -39.87979 -38.81240 -36.03981 -35.00631 -34.95576 -33.29739 -32.21914 -29.99041 -29.62188 -27.82638 -27.56615 -26.44098 -25.69351 -24.49040 -22.50644 -22.27909 -21.74784 -20.81578 -20.44404 -19.06031 -18.55849 -17.98728 -17.74656 -17.13833 -16.91112 -16.67888 -16.50978 -16.08130 -15.81086 -15.58539 -15.35541 -15.12040 -14.83414 -14.57596 -14.34444 -14.27165 -13.80122 -13.69971 -13.45469 -13.41172 -13.23304 -13.20123 -13.01038 -12.96137 -12.90597 -12.65569 -12.15152 -12.05921 -12.03655 -11.58004 -11.53223 -11.09679 -10.93300 -10.85662 -10.78801 -10.75459 -10.55368 -10.08483 -9.39238 -8.96557 -7.93603 -5.22144 0.98781 1.48126 1.49035 1.58890 1.59097 1.62512 2.00615 2.19983 2.57637 3.00355 3.38000 3.39405 3.63977 3.75653 3.77424 3.88899 3.96192 3.97895 4.06782 4.13118 4.19334 4.27249 4.33463 4.37360 4.43170 4.44419 4.54801 4.57380 4.66148 4.70066 4.75013 4.78683 4.82779 4.99319 5.01163 5.07003 5.21655 5.24561 5.31488 5.37148 5.44178 5.54473 5.75793 5.80780 5.99898 6.25475 6.28691 6.60472 7.20164 7.28160 7.33908 8.12778 8.34079 9.30224 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.001529 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.913487 B =18303.634189 C =18384.306513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.117 0.883 4 O -0.381 6.381 5 C 0.044 3.956 6 C 0.502 3.498 7 O -0.582 6.582 8 N -0.707 5.707 9 C 0.138 3.862 10 C -0.092 4.092 11 C -0.152 4.152 12 C 0.142 3.858 13 N -0.731 5.731 14 C -0.241 4.241 15 H 0.082 0.918 16 C -0.082 4.082 17 N -0.974 5.974 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.296 1.296 21 H -0.296 1.296 22 C -0.140 4.140 23 C 0.180 3.820 24 N -0.521 5.521 25 C -0.071 4.071 26 C -0.037 4.037 27 N -0.453 5.453 28 C 0.056 3.944 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.421 0.579 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.176 0.824 46 H 0.215 0.785 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 16.098 35.517 39.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.115 3.885 3 H 0.134 0.866 4 O -0.298 6.298 5 C -0.035 4.035 6 C 0.289 3.711 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.014 3.986 10 C -0.111 4.111 11 C -0.193 4.193 12 C 0.033 3.967 13 N -0.368 5.368 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.273 4.273 17 N -0.625 5.625 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.223 1.223 21 H -0.224 1.224 22 C -0.179 4.179 23 C -0.083 4.083 24 N -0.241 5.241 25 C -0.218 4.218 26 C -0.171 4.171 27 N -0.136 5.136 28 C -0.084 4.084 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.193 0.807 46 H 0.232 0.768 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.437 14.813 34.908 38.076 hybrid contribution -0.289 0.077 -0.569 0.643 sum 3.147 14.891 34.339 37.560 Atomic orbital electron populations 1.22224 0.93051 1.02712 1.04182 1.20329 0.94481 0.94371 0.79291 0.86571 1.88184 1.86938 1.35047 1.19678 1.22496 1.04009 0.92268 0.84711 1.21014 0.77251 0.88008 0.84813 1.90756 1.53236 1.17996 1.84158 1.45708 1.67250 1.13139 1.10020 1.21202 0.98555 0.93803 0.85005 1.22463 0.97849 0.99504 0.91254 1.23740 0.96633 1.01196 0.97738 1.22015 0.93407 0.95305 0.85980 1.42666 1.71176 1.06212 1.16787 1.19803 1.30396 0.92311 0.94752 0.90033 1.25617 1.03310 0.96332 1.02067 1.69842 1.52141 1.06804 1.33671 0.85058 0.76952 0.78372 0.79297 1.18550 1.22299 1.22382 1.23341 0.99864 0.99311 0.95407 1.23168 1.03971 0.88951 0.92190 1.70195 1.20835 1.14360 1.18672 1.22766 1.06379 1.00050 0.92633 1.23274 1.07535 0.87301 0.99027 1.45540 1.44947 1.09498 1.13646 1.22514 1.04822 0.74836 1.06260 0.89650 0.89330 0.93916 0.86561 0.86210 0.74169 0.92038 0.94020 0.85466 0.92934 0.90806 0.89830 0.79791 0.94186 0.90252 0.91906 0.80676 0.76849 0.89139 0.87585 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.51 71.98 0.68 -1.49 16 2 C 0.17 2.69 2.99 29.85 0.09 2.78 16 3 H 0.12 0.65 6.72 -2.38 -0.02 0.64 16 4 O -0.38 -9.08 9.50 -129.94 -1.23 -10.32 16 5 C 0.04 0.66 6.23 71.24 0.44 1.10 16 6 C 0.50 12.57 7.91 87.66 0.69 13.26 16 7 O -0.58 -22.43 16.50 15.98 0.26 -22.17 16 8 N -0.71 -13.77 5.56 -463.06 -2.57 -16.34 16 9 C 0.14 3.50 5.50 86.38 0.47 3.98 16 10 C -0.09 -2.14 3.75 -10.27 -0.04 -2.18 16 11 C -0.15 -4.66 7.45 31.18 0.23 -4.42 16 12 C 0.14 5.27 4.48 45.57 0.20 5.47 16 13 N -0.73 -36.85 5.41 -320.17 -1.73 -38.58 16 14 C -0.24 -13.27 9.97 84.03 0.84 -12.44 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 17 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 18 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 22 C -0.14 -4.25 7.40 31.12 0.23 -4.02 16 23 C 0.18 3.72 6.79 138.13 0.94 4.65 16 24 N -0.52 -14.90 11.25 -188.13 -2.12 -17.01 16 25 C -0.07 -1.52 11.87 83.52 0.99 -0.53 16 26 C -0.04 -0.51 11.58 83.09 0.96 0.45 16 27 N -0.45 -5.80 3.15 -537.61 -1.69 -7.50 16 28 C 0.06 0.08 10.75 127.77 1.37 1.45 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.80 7.87 -2.39 -0.02 0.78 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 0.94 7.87 -2.39 -0.02 0.92 16 33 H 0.12 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.42 4.59 8.47 -92.71 -0.79 3.81 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.32 7.87 -2.38 -0.02 1.30 16 37 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.90 7.92 -2.39 -0.02 1.88 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.95 8.10 -2.38 -0.02 2.93 16 41 H 0.37 20.51 7.92 -92.71 -0.73 19.77 16 42 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 45 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 46 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.11 -0.25 7.33 -2.39 -0.02 -0.26 16 49 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -92.87 410.58 1.25 -91.62 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.56 Total: 28.73 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 8.58 Total: 3.84 kcal Atomic # 7 Polarization: -132.06 SS G_CDS: -7.83 Total: -139.89 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.97 Total: -32.49 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -92.87 1.25 -91.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100927126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.563 kcal (2) G-P(sol) polarization free energy of solvation -92.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds