Wall clock time and date at job start Tue Mar 31 2020 19:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.63784 * 2 1 4 4 C 1.54318 * 110.87299 * 236.75313 * 2 1 3 5 5 N 1.47021 * 107.26966 * 219.37239 * 4 2 1 6 6 C 1.36944 * 125.64681 * 178.98643 * 5 4 2 7 7 H 1.07997 * 119.99826 * 174.78514 * 6 5 4 8 8 C 1.38811 * 120.00098 * 354.78158 * 6 5 4 9 9 N 1.31623 * 119.99625 * 7.05969 * 8 6 5 10 10 Si 1.86799 * 120.00238 * 187.05496 * 8 6 5 11 11 H 1.48500 * 109.47030 * 94.98792 * 10 8 6 12 12 H 1.48502 * 109.47109 * 214.99205 * 10 8 6 13 13 H 1.48499 * 109.46939 * 334.99023 * 10 8 6 14 14 C 1.47419 * 108.70561 * 358.93845 * 5 4 2 15 15 C 1.54904 * 104.83314 * 24.12966 * 14 5 4 16 16 H 1.09000 * 111.03742 * 81.07841 * 15 14 5 17 17 C 1.52995 * 111.00880 * 204.91802 * 15 14 5 18 18 N 1.46501 * 109.47042 * 287.19745 * 17 15 14 19 19 C 1.34776 * 119.99837 * 180.02562 * 18 17 15 20 20 O 1.21281 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99821 * 180.02562 * 19 18 17 22 22 O 1.42902 * 109.47244 * 179.97438 * 21 19 18 23 23 C 1.42895 * 113.99971 * 179.97438 * 22 21 19 24 24 C 1.50702 * 109.47042 * 179.97438 * 23 22 21 25 25 C 1.35314 * 126.12718 * 359.69038 * 24 23 22 26 26 C 1.39870 * 107.92134 * 179.90569 * 25 24 23 27 27 N 1.30833 * 108.20266 * 0.36263 * 26 25 24 28 28 N 1.34948 * 126.12974 * 180.02562 * 24 23 22 29 29 C 1.46501 * 126.03457 * 359.94690 * 28 24 23 30 30 H 1.09007 * 109.46595 * 296.85703 * 1 2 3 31 31 H 1.08992 * 109.47357 * 56.85919 * 1 2 3 32 32 H 1.09000 * 109.47218 * 176.86177 * 1 2 3 33 33 H 1.09004 * 109.87959 * 338.78551 * 4 2 1 34 34 H 1.09002 * 109.88465 * 99.95184 * 4 2 1 35 35 H 0.97006 * 119.99435 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.36801 * 265.29211 * 14 5 4 37 37 H 1.09000 * 110.36694 * 142.96728 * 14 5 4 38 38 H 1.08994 * 109.47770 * 167.19393 * 17 15 14 39 39 H 1.09006 * 109.47098 * 47.19440 * 17 15 14 40 40 H 0.96994 * 119.99959 * 359.97438 * 18 17 15 41 41 H 1.08994 * 109.47253 * 59.99143 * 21 19 18 42 42 H 1.09006 * 109.46782 * 299.99125 * 21 19 18 43 43 H 1.08996 * 109.47473 * 300.00206 * 23 22 21 44 44 H 1.09002 * 109.47195 * 60.00333 * 23 22 21 45 45 H 1.08001 * 126.04175 * 0.03978 * 25 24 23 46 46 H 1.07998 * 125.89955 * 180.14791 * 26 25 24 47 47 H 1.09002 * 109.47324 * 89.99615 * 29 28 24 48 48 H 1.09001 * 109.46985 * 209.99934 * 29 28 24 49 49 H 1.09005 * 109.47040 * 329.99489 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2494 -1.5469 -0.7353 6 6 4.0126 -2.3916 -1.4965 7 1 4.9037 -2.8374 -1.0797 8 6 3.6410 -2.6749 -2.8035 9 7 2.6375 -2.0277 -3.3573 10 14 4.5650 -3.9743 -3.7766 11 1 3.8536 -5.2733 -3.6677 12 1 4.6364 -3.5671 -5.2029 13 1 5.9396 -4.1156 -3.2328 14 6 3.4652 -1.2446 0.6913 15 6 2.0791 -0.7933 1.2152 16 1 1.4467 -1.6525 1.4388 17 6 2.2237 0.1112 2.4406 18 7 2.6289 -0.6931 3.5961 19 6 2.8177 -0.1046 4.7938 20 8 2.6525 1.0908 4.9149 21 6 3.2351 -0.9318 5.9824 22 8 3.3701 -0.0870 7.1270 23 6 3.7644 -0.7764 8.3149 24 6 3.8759 0.2060 9.4523 25 6 3.6494 1.5381 9.3809 26 6 3.8598 2.0792 10.6534 27 7 4.2080 1.1081 11.4580 28 7 4.2257 -0.0842 10.7229 29 6 4.5637 -1.4118 11.2420 30 1 -0.3633 0.4643 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3190 -1.4773 -1.5769 34 1 2.3775 -0.1015 -1.9963 35 1 2.3780 -2.2254 -4.2708 36 1 4.1930 -0.4408 0.8029 37 1 3.7993 -2.1363 1.2218 38 1 1.2693 0.5939 2.6506 39 1 2.9798 0.8714 2.2439 40 1 2.7607 -1.6491 3.4993 41 1 4.1899 -1.4138 5.7723 42 1 2.4795 -1.6925 6.1789 43 1 3.0194 -1.5334 8.5599 44 1 4.7299 -1.2558 8.1534 45 1 3.3557 2.0864 8.4979 46 1 3.7565 3.1196 10.9241 47 1 5.6351 -1.5818 11.1352 48 1 4.2897 -1.4707 12.2953 49 1 4.0177 -2.1708 10.6816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102080059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:44 Heat of formation + Delta-G solvation = 24.722181 kcal Electronic energy + Delta-G solvation = -28177.144449 eV Core-core repulsion = 24142.169933 eV Total energy + Delta-G solvation = -4034.974516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51150 -39.88794 -38.30306 -37.62598 -34.68892 -33.69249 -32.98492 -31.68287 -30.76536 -29.88243 -28.01464 -27.10503 -26.25820 -25.83864 -24.85791 -22.77296 -21.40463 -20.83185 -20.24069 -20.04039 -19.24900 -17.72701 -17.15681 -16.90887 -16.82611 -16.52067 -15.85986 -15.58819 -15.14238 -14.83499 -14.68646 -14.32233 -14.02003 -13.88916 -13.73666 -13.47250 -13.10643 -13.08440 -12.92414 -12.76962 -12.62028 -12.54307 -11.95922 -11.83509 -11.70007 -11.39747 -11.25609 -10.98302 -10.83660 -10.81724 -10.35959 -10.21252 -10.03237 -10.01416 -9.94197 -9.69275 -9.57163 -9.55172 -9.01647 -8.76362 -8.60776 -6.85658 -5.75398 -3.07842 1.50668 1.98193 2.55148 2.60765 2.68967 3.37073 3.42306 3.44629 3.63018 4.16384 4.27064 4.46146 4.52641 4.64148 4.66989 4.75716 4.77701 4.84577 4.90447 4.96405 5.07217 5.17775 5.30527 5.38898 5.49996 5.50302 5.53385 5.73212 5.84215 5.93650 6.00023 6.07432 6.16179 6.25690 6.36822 6.42167 6.46097 6.50567 6.54142 6.60363 6.68420 6.73976 6.91349 7.39686 7.46261 7.53877 7.62567 7.81062 8.17439 8.23149 9.18802 9.79468 10.45964 11.36501 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.001763 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.112521 B =15876.964894 C =16847.561744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.723 5.723 19 C 0.512 3.488 20 O -0.521 6.521 21 C 0.044 3.956 22 O -0.349 6.349 23 C 0.130 3.870 24 C 0.071 3.929 25 C -0.238 4.238 26 C 0.045 3.955 27 N -0.295 5.295 28 N -0.374 5.374 29 C 0.098 3.902 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.157 0.843 46 H 0.186 0.814 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 0.048 25.195 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.011 3.989 18 N -0.376 5.376 19 C 0.296 3.704 20 O -0.396 6.396 21 C -0.036 4.036 22 O -0.266 6.266 23 C 0.052 3.948 24 C -0.055 4.055 25 C -0.267 4.267 26 C -0.141 4.141 27 N -0.117 5.117 28 N -0.159 5.159 29 C -0.043 4.043 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.174 0.826 46 H 0.202 0.798 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.271 0.597 26.278 26.286 hybrid contribution 0.399 -1.286 -1.477 1.999 sum 0.128 -0.689 24.801 24.811 Atomic orbital electron populations 1.21694 0.95281 1.01611 1.00607 1.22438 0.95177 0.99150 0.96275 0.91398 1.21231 0.89180 0.93061 0.90731 1.44468 1.32585 1.51745 1.04459 1.19044 1.04339 1.18593 0.93869 0.90491 1.24826 0.98510 0.99910 0.97121 1.69981 1.30095 1.42706 1.13795 0.86129 0.78881 0.81518 0.79428 1.21652 1.21761 1.20670 1.21590 0.93002 0.97020 0.86859 1.22678 0.99424 0.98069 0.93069 0.90107 1.21420 1.00257 0.93733 0.83472 1.45945 1.70309 1.12373 1.08960 1.20063 0.78095 0.88473 0.83757 1.90743 1.49623 1.14918 1.84356 1.22265 1.02262 0.93110 0.85948 1.88008 1.89607 1.32979 1.15989 1.20581 0.99917 0.91487 0.82833 1.20497 1.02305 0.96301 0.86419 1.21399 1.12965 0.92948 0.99413 1.23941 0.98962 0.99159 0.92021 1.77379 1.24656 0.90127 1.19526 1.48383 1.54064 1.07641 1.05774 1.21873 1.01838 0.78865 1.01727 0.93624 0.92749 0.92724 0.93147 0.94223 0.93741 0.96364 0.94599 0.91506 0.91251 0.76386 0.89796 0.89932 0.91232 0.91139 0.82562 0.79752 0.90621 0.89097 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.17 37.16 0.34 -1.68 16 2 C -0.11 -1.94 3.01 -88.78 -0.27 -2.20 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 4 C 0.18 4.27 4.98 -3.07 -0.02 4.25 16 5 N -0.61 -14.92 3.39 -170.08 -0.58 -15.50 16 6 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -26.52 10.36 55.49 0.57 -25.94 16 10 Si 0.91 21.67 29.56 -169.99 -5.02 16.64 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.14 2.71 6.65 -2.54 -0.02 2.69 16 15 C -0.11 -1.76 2.49 -88.47 -0.22 -1.98 16 16 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 17 C 0.13 1.83 5.13 -4.04 -0.02 1.81 16 18 N -0.72 -8.17 5.50 -60.29 -0.33 -8.51 16 19 C 0.51 6.34 7.91 -10.98 -0.09 6.25 16 20 O -0.52 -8.90 16.50 -14.35 -0.24 -9.14 16 21 C 0.04 0.37 6.42 36.01 0.23 0.60 16 22 O -0.35 -3.67 9.17 -55.14 -0.51 -4.18 16 23 C 0.13 0.96 5.90 36.01 0.21 1.17 16 24 C 0.07 0.70 6.91 -82.26 -0.57 0.13 16 25 C -0.24 -2.63 10.14 -40.01 -0.41 -3.04 16 26 C 0.04 0.45 12.03 -17.37 -0.21 0.25 16 27 N -0.30 -3.33 12.58 30.62 0.39 -2.95 16 28 N -0.37 -3.48 4.01 -63.88 -0.26 -3.74 16 29 C 0.10 0.46 11.27 59.85 0.67 1.13 16 30 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.05 1.30 6.93 -51.93 -0.36 0.94 16 34 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 40 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.16 1.82 7.85 -52.49 -0.41 1.40 16 46 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.19 7.79 -51.93 -0.40 -0.21 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -36.25 404.34 -8.67 -44.92 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.19 Total: -0.38 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.60 Total: 2.68 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.21 Total: -56.63 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.74 Total: -13.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.25 -8.67 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102080059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds