Wall clock time and date at job start Tue Mar 31 2020 19:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.63784 * 2 1 4 4 C 1.54318 * 110.87299 * 236.75313 * 2 1 3 5 5 N 1.47021 * 107.26966 * 219.37239 * 4 2 1 6 6 C 1.36944 * 125.64681 * 178.98643 * 5 4 2 7 7 H 1.07997 * 119.99826 * 174.78514 * 6 5 4 8 8 C 1.38811 * 120.00098 * 354.78158 * 6 5 4 9 9 N 1.31623 * 119.99625 * 7.05969 * 8 6 5 10 10 Si 1.86799 * 120.00238 * 187.05496 * 8 6 5 11 11 H 1.48500 * 109.47030 * 94.98792 * 10 8 6 12 12 H 1.48502 * 109.47109 * 214.99205 * 10 8 6 13 13 H 1.48499 * 109.46939 * 334.99023 * 10 8 6 14 14 C 1.47419 * 108.70561 * 358.93845 * 5 4 2 15 15 C 1.54904 * 104.83314 * 24.12966 * 14 5 4 16 16 H 1.09000 * 111.03742 * 81.07841 * 15 14 5 17 17 C 1.52995 * 111.00880 * 204.91802 * 15 14 5 18 18 N 1.46501 * 109.47042 * 287.19745 * 17 15 14 19 19 C 1.34776 * 119.99837 * 180.02562 * 18 17 15 20 20 O 1.21281 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99821 * 180.02562 * 19 18 17 22 22 O 1.42902 * 109.47244 * 179.97438 * 21 19 18 23 23 C 1.42895 * 113.99971 * 179.97438 * 22 21 19 24 24 C 1.50702 * 109.47042 * 179.97438 * 23 22 21 25 25 C 1.35314 * 126.12718 * 359.69038 * 24 23 22 26 26 C 1.39870 * 107.92134 * 179.90569 * 25 24 23 27 27 N 1.30833 * 108.20266 * 0.36263 * 26 25 24 28 28 N 1.34948 * 126.12974 * 180.02562 * 24 23 22 29 29 C 1.46501 * 126.03457 * 359.94690 * 28 24 23 30 30 H 1.09007 * 109.46595 * 296.85703 * 1 2 3 31 31 H 1.08992 * 109.47357 * 56.85919 * 1 2 3 32 32 H 1.09000 * 109.47218 * 176.86177 * 1 2 3 33 33 H 1.09004 * 109.87959 * 338.78551 * 4 2 1 34 34 H 1.09002 * 109.88465 * 99.95184 * 4 2 1 35 35 H 0.97006 * 119.99435 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.36801 * 265.29211 * 14 5 4 37 37 H 1.09000 * 110.36694 * 142.96728 * 14 5 4 38 38 H 1.08994 * 109.47770 * 167.19393 * 17 15 14 39 39 H 1.09006 * 109.47098 * 47.19440 * 17 15 14 40 40 H 0.96994 * 119.99959 * 359.97438 * 18 17 15 41 41 H 1.08994 * 109.47253 * 59.99143 * 21 19 18 42 42 H 1.09006 * 109.46782 * 299.99125 * 21 19 18 43 43 H 1.08996 * 109.47473 * 300.00206 * 23 22 21 44 44 H 1.09002 * 109.47195 * 60.00333 * 23 22 21 45 45 H 1.08001 * 126.04175 * 0.03978 * 25 24 23 46 46 H 1.07998 * 125.89955 * 180.14791 * 26 25 24 47 47 H 1.09002 * 109.47324 * 89.99615 * 29 28 24 48 48 H 1.09001 * 109.46985 * 209.99934 * 29 28 24 49 49 H 1.09005 * 109.47040 * 329.99489 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2494 -1.5469 -0.7353 6 6 4.0126 -2.3916 -1.4965 7 1 4.9037 -2.8374 -1.0797 8 6 3.6410 -2.6749 -2.8035 9 7 2.6375 -2.0277 -3.3573 10 14 4.5650 -3.9743 -3.7766 11 1 3.8536 -5.2733 -3.6677 12 1 4.6364 -3.5671 -5.2029 13 1 5.9396 -4.1156 -3.2328 14 6 3.4652 -1.2446 0.6913 15 6 2.0791 -0.7933 1.2152 16 1 1.4467 -1.6525 1.4388 17 6 2.2237 0.1112 2.4406 18 7 2.6289 -0.6931 3.5961 19 6 2.8177 -0.1046 4.7938 20 8 2.6525 1.0908 4.9149 21 6 3.2351 -0.9318 5.9824 22 8 3.3701 -0.0870 7.1270 23 6 3.7644 -0.7764 8.3149 24 6 3.8759 0.2060 9.4523 25 6 3.6494 1.5381 9.3809 26 6 3.8598 2.0792 10.6534 27 7 4.2080 1.1081 11.4580 28 7 4.2257 -0.0842 10.7229 29 6 4.5637 -1.4118 11.2420 30 1 -0.3633 0.4643 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3190 -1.4773 -1.5769 34 1 2.3775 -0.1015 -1.9963 35 1 2.3780 -2.2254 -4.2708 36 1 4.1930 -0.4408 0.8029 37 1 3.7993 -2.1363 1.2218 38 1 1.2693 0.5939 2.6506 39 1 2.9798 0.8714 2.2439 40 1 2.7607 -1.6491 3.4993 41 1 4.1899 -1.4138 5.7723 42 1 2.4795 -1.6925 6.1789 43 1 3.0194 -1.5334 8.5599 44 1 4.7299 -1.2558 8.1534 45 1 3.3557 2.0864 8.4979 46 1 3.7565 3.1196 10.9241 47 1 5.6351 -1.5818 11.1352 48 1 4.2897 -1.4707 12.2953 49 1 4.0177 -2.1708 10.6816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102080059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:43 Heat of formation + Delta-G solvation = -0.554039 kcal Electronic energy + Delta-G solvation = -28178.240508 eV Core-core repulsion = 24142.169933 eV Total energy + Delta-G solvation = -4036.070575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18939 -40.86917 -39.62522 -38.51001 -35.99637 -34.65292 -34.27531 -32.52932 -32.35316 -31.11297 -28.99355 -27.75703 -27.60728 -26.87877 -26.16375 -24.31127 -22.15768 -21.85156 -21.57129 -20.93675 -20.62034 -18.89250 -18.39836 -17.85200 -17.52005 -17.42828 -16.83591 -16.52484 -16.41635 -16.01891 -15.68736 -15.53009 -15.34154 -14.83777 -14.68971 -14.54554 -14.39255 -14.14914 -13.84671 -13.65812 -13.41992 -13.38420 -13.20591 -13.10528 -13.04879 -12.84104 -12.66939 -12.57207 -12.38681 -11.91253 -11.83034 -11.71435 -11.54004 -11.37901 -11.34318 -10.94269 -10.77621 -10.66504 -10.18375 -10.04523 -9.47709 -8.86560 -7.83945 -5.18127 0.82122 1.39726 1.47296 1.48546 1.57511 1.65017 1.85158 1.96171 2.50919 2.94858 3.33935 3.58882 3.64553 3.71641 3.78570 3.90183 3.97062 3.98645 4.18057 4.27237 4.29513 4.37001 4.39701 4.41429 4.47675 4.53107 4.63076 4.68090 4.73305 4.76935 4.81234 4.85709 4.89051 5.00305 5.11243 5.18338 5.18868 5.36725 5.40940 5.50577 5.52582 5.70175 5.73219 5.84174 5.92570 6.11035 6.22506 6.61411 6.69003 7.12373 7.29231 7.80730 8.45636 9.26785 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.001763 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.112521 B =15876.964894 C =16847.561744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.071 0.929 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.137 3.863 15 C -0.088 4.088 16 H 0.094 0.906 17 C 0.146 3.854 18 N -0.712 5.712 19 C 0.507 3.493 20 O -0.577 6.577 21 C 0.049 3.951 22 O -0.385 6.385 23 C 0.130 3.870 24 C 0.073 3.927 25 C -0.273 4.273 26 C 0.039 3.961 27 N -0.328 5.328 28 N -0.373 5.373 29 C 0.086 3.914 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.019 0.981 34 H -0.005 1.005 35 H 0.246 0.754 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.417 0.583 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.141 0.859 46 H 0.204 0.796 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -2.261 27.304 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.213 1.213 12 H -0.226 1.226 13 H -0.192 1.192 14 C 0.012 3.988 15 C -0.108 4.108 16 H 0.112 0.888 17 C 0.022 3.978 18 N -0.366 5.366 19 C 0.294 3.706 20 O -0.455 6.455 21 C -0.030 4.030 22 O -0.303 6.303 23 C 0.053 3.947 24 C -0.056 4.056 25 C -0.303 4.303 26 C -0.146 4.146 27 N -0.151 5.151 28 N -0.158 5.158 29 C -0.053 4.053 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.158 0.842 46 H 0.221 0.779 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.091 -1.760 28.441 28.496 hybrid contribution 0.348 -0.574 -2.118 2.222 sum 0.439 -2.334 26.323 26.430 Atomic orbital electron populations 1.21637 0.93015 1.01715 1.02107 1.22318 0.96968 0.98532 0.94488 0.91046 1.20982 0.88307 0.91898 0.92217 1.44807 1.32510 1.51461 1.06757 1.19465 1.04718 1.18412 0.94358 0.89801 1.25670 0.99848 1.02129 0.98423 1.70210 1.31844 1.44208 1.13624 0.85087 0.78295 0.78797 0.77332 1.21273 1.22579 1.19182 1.21785 0.95023 0.97656 0.84346 1.22461 0.97067 0.98333 0.92923 0.88820 1.21112 1.00215 0.93083 0.83401 1.45794 1.69704 1.12938 1.08175 1.20883 0.76735 0.88168 0.84776 1.90727 1.52084 1.17508 1.85224 1.22373 1.04857 0.92240 0.83560 1.87963 1.90139 1.34922 1.17316 1.20829 1.02192 0.90826 0.80902 1.20947 1.00745 0.96491 0.87369 1.21442 1.15326 0.94150 0.99340 1.24284 0.98453 1.00122 0.91723 1.77306 1.25950 0.91171 1.20628 1.48717 1.53121 1.08395 1.05521 1.22284 1.03233 0.77368 1.02450 0.90614 0.92942 0.93129 0.96319 0.98705 0.94519 0.96709 0.92759 0.90946 0.92741 0.74587 0.86718 0.86237 0.88168 0.88508 0.84161 0.77925 0.89309 0.88745 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.17 71.98 0.66 -2.99 16 2 C -0.10 -3.56 3.01 -9.60 -0.03 -3.59 16 3 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 4 C 0.19 9.21 4.98 86.73 0.43 9.64 16 5 N -0.63 -31.19 3.39 -692.01 -2.35 -33.54 16 6 C -0.24 -13.13 10.27 84.03 0.86 -12.27 16 7 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 8 C -0.07 -3.80 5.48 84.86 0.46 -3.34 16 9 N -0.95 -56.79 10.36 21.65 0.22 -56.57 16 10 Si 0.98 44.96 29.56 68.60 2.03 46.99 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 C 0.14 5.05 6.65 86.85 0.58 5.63 16 15 C -0.09 -2.58 2.49 -9.40 -0.02 -2.61 16 16 H 0.09 2.57 8.05 -2.39 -0.02 2.55 16 17 C 0.15 3.67 5.13 86.38 0.44 4.11 16 18 N -0.71 -13.97 5.50 -463.06 -2.55 -16.52 16 19 C 0.51 11.35 7.91 87.66 0.69 12.04 16 20 O -0.58 -19.29 16.50 16.00 0.26 -19.03 16 21 C 0.05 0.61 6.42 71.24 0.46 1.07 16 22 O -0.39 -7.16 9.17 -129.94 -1.19 -8.35 16 23 C 0.13 1.46 5.90 71.24 0.42 1.88 16 24 C 0.07 1.32 6.91 41.41 0.29 1.60 16 25 C -0.27 -6.13 10.14 21.99 0.22 -5.91 16 26 C 0.04 0.80 12.03 85.24 1.02 1.83 16 27 N -0.33 -7.29 12.58 -57.03 -0.72 -8.00 16 28 N -0.37 -6.33 4.01 -356.02 -1.43 -7.76 16 29 C 0.09 0.57 11.27 127.77 1.44 2.01 16 30 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.02 1.00 6.93 -2.38 -0.02 0.99 16 34 H -0.01 -0.30 7.61 -2.39 -0.02 -0.32 16 35 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 36 H 0.02 0.57 7.91 -2.38 -0.02 0.56 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.80 8.08 -2.39 -0.02 1.79 16 39 H 0.05 1.57 7.96 -2.38 -0.02 1.55 16 40 H 0.42 5.71 8.47 -92.71 -0.79 4.92 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.14 3.49 7.85 -2.91 -0.02 3.47 16 46 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 47 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.12 0.04 7.79 -2.38 -0.02 0.02 16 Total: -1.00 -83.89 404.34 2.37 -81.52 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.15 Total: 12.16 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 7.93 Total: 9.10 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -6.82 Total: -122.40 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.93 Total: -27.38 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -83.89 2.37 -81.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102080059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.970 kcal (2) G-P(sol) polarization free energy of solvation -83.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds