Wall clock time and date at job start Tue Mar 31 2020 19:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00196 * 2 1 4 4 H 1.09004 * 109.46464 * 30.00421 * 3 2 1 5 5 C 1.50699 * 109.47389 * 270.00360 * 3 2 1 6 6 O 1.21286 * 120.00155 * 355.00169 * 5 3 2 7 7 N 1.34771 * 120.00138 * 174.99702 * 5 3 2 8 8 C 1.46504 * 120.00135 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.89377 * 57.42461 * 9 8 7 11 11 C 1.54912 * 111.00343 * 293.54458 * 9 8 7 12 12 N 1.47426 * 104.83261 * 204.88065 * 11 9 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 9 14 14 H 1.08005 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47563 * 59.99703 * 17 15 13 19 19 H 1.48504 * 109.46777 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47166 * 299.99426 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 9 22 22 C 1.54327 * 107.26774 * 358.94057 * 21 12 11 23 23 H 1.08996 * 110.72159 * 96.17410 * 22 21 12 24 24 C 1.53002 * 110.87100 * 219.37132 * 22 21 12 25 25 C 1.50696 * 109.46881 * 149.99998 * 3 2 1 26 26 C 1.39869 * 126.03832 * 40.03151 * 25 3 2 27 27 N 1.30838 * 108.19843 * 179.97438 * 26 25 3 28 28 N 1.40077 * 108.21000 * 0.02562 * 27 26 25 29 29 C 1.46497 * 126.04033 * 179.97438 * 28 27 26 30 30 C 1.34951 * 107.92221 * 359.75807 * 28 27 26 31 31 H 1.09004 * 109.47002 * 299.99763 * 1 2 3 32 32 H 1.09005 * 109.47567 * 59.99306 * 1 2 3 33 33 H 1.08995 * 109.47554 * 179.97438 * 1 2 3 34 34 H 0.97006 * 119.99699 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47113 * 60.00388 * 8 7 5 36 36 H 1.08995 * 109.46648 * 299.99912 * 8 7 5 37 37 H 1.09002 * 110.36496 * 86.04481 * 11 9 8 38 38 H 1.08997 * 110.36790 * 323.72116 * 11 9 8 39 39 H 0.97001 * 119.99407 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.88316 * 118.35549 * 21 12 11 41 41 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 42 42 H 1.08997 * 109.46866 * 173.61176 * 24 22 21 43 43 H 1.08995 * 109.47083 * 293.61308 * 24 22 21 44 44 H 1.09007 * 109.46846 * 53.61045 * 24 22 21 45 45 H 1.07993 * 125.90366 * 359.97438 * 26 25 3 46 46 H 1.08999 * 109.47736 * 89.97344 * 29 28 27 47 47 H 1.09003 * 109.47195 * 209.97429 * 29 28 27 48 48 H 1.09008 * 109.47322 * 329.97124 * 29 28 27 49 49 H 1.07999 * 126.12394 * 180.24368 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2145 1.7645 -1.4208 6 8 1.9790 1.0108 -2.3414 7 7 2.6588 3.0125 -1.6685 8 6 2.8579 3.4585 -3.0497 9 6 3.3637 4.9025 -3.0514 10 1 4.2868 4.9917 -2.4787 11 6 2.2808 5.8708 -2.5134 12 7 2.6109 7.1767 -3.1127 13 6 2.2549 8.3991 -2.6084 14 1 1.6821 8.4603 -1.6948 15 6 2.6294 9.5594 -3.2720 16 7 3.3269 9.4846 -4.3856 17 14 2.1444 11.2269 -2.5837 18 1 2.7214 11.3885 -1.2251 19 1 2.6624 12.2985 -3.4717 20 1 0.6642 11.3193 -2.5071 21 6 3.3800 6.9491 -4.3448 22 6 3.5556 5.4237 -4.5001 23 1 2.7930 5.0131 -5.1619 24 6 4.9559 5.0859 -5.0160 25 6 3.3386 1.2638 0.7104 26 6 4.2925 0.2455 0.6126 27 7 5.3096 0.5642 1.3715 28 7 5.0345 1.7967 1.9774 29 6 5.9109 2.5157 2.9054 30 6 3.8214 2.2072 1.5517 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8474 3.6152 -0.9322 35 1 1.9124 3.4038 -3.5891 36 1 3.5917 2.8163 -3.5366 37 1 2.3304 5.9290 -1.4261 38 1 1.2901 5.5467 -2.8320 39 1 3.5889 10.2955 -4.8491 40 1 2.8360 7.3486 -5.2006 41 1 4.3558 7.4285 -4.2666 42 1 5.0944 4.0048 -5.0095 43 1 5.0685 5.4606 -6.0333 44 1 5.7023 5.5517 -4.3725 45 1 4.2047 -0.6491 0.0142 46 1 6.5672 3.1807 2.3440 47 1 5.3054 3.1016 3.5970 48 1 6.5123 1.7998 3.4658 49 1 3.3243 3.1236 1.8336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102195109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:34 Heat of formation + Delta-G solvation = 24.908114 kcal Electronic energy + Delta-G solvation = -29710.652659 eV Core-core repulsion = 25675.686205 eV Total energy + Delta-G solvation = -4034.966454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56719 -39.79398 -38.21727 -37.24218 -34.60868 -33.66404 -32.95868 -31.60688 -30.74565 -29.39452 -28.34347 -26.52486 -26.20389 -25.66180 -24.70860 -22.74770 -21.41166 -21.17337 -20.34072 -19.96990 -19.22217 -17.70615 -17.30735 -16.76367 -16.61921 -15.78821 -15.63293 -15.43617 -15.00629 -14.68970 -14.55081 -14.41820 -14.03382 -13.78856 -13.42459 -13.31424 -13.15602 -12.95354 -12.90980 -12.72507 -12.53260 -12.33281 -11.81863 -11.65590 -11.61427 -11.40419 -11.21369 -10.82785 -10.80401 -10.76615 -10.71170 -10.17775 -10.03546 -9.94052 -9.85414 -9.67513 -9.62027 -9.43977 -8.90542 -8.63783 -8.61735 -6.85696 -5.73714 -3.07480 1.57132 2.21535 2.43896 2.73794 3.09336 3.37051 3.41452 3.43130 3.77442 4.29875 4.46190 4.51845 4.70734 4.80485 4.83169 4.86518 5.02243 5.11177 5.11879 5.20519 5.23530 5.30963 5.32204 5.50093 5.51187 5.55854 5.56702 5.67952 5.76110 5.88241 6.02666 6.11678 6.18685 6.27733 6.36365 6.47097 6.49318 6.54825 6.62035 6.65894 6.75542 6.85671 6.93315 7.43968 7.53480 7.59653 7.63119 7.81533 8.23652 8.29731 9.19325 9.79842 10.46289 11.37711 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002875 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.579854 B = 9737.029658 C =10372.850660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.158 3.842 4 H 0.090 0.910 5 C 0.495 3.505 6 O -0.530 6.530 7 N -0.719 5.719 8 C 0.134 3.866 9 C -0.112 4.112 10 H 0.078 0.922 11 C 0.143 3.857 12 N -0.606 5.606 13 C -0.231 4.231 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.184 3.816 22 C -0.110 4.110 23 H 0.067 0.933 24 C -0.134 4.134 25 C -0.242 4.242 26 C 0.082 3.918 27 N -0.298 5.298 28 N -0.372 5.372 29 C 0.100 3.900 30 C 0.074 3.926 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.186 0.814 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -15.772 12.842 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.095 3.905 4 H 0.107 0.893 5 C 0.279 3.721 6 O -0.406 6.406 7 N -0.371 5.371 8 C 0.010 3.990 9 C -0.132 4.132 10 H 0.097 0.903 11 C 0.017 3.983 12 N -0.332 5.332 13 C -0.359 4.359 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.060 3.940 22 C -0.130 4.130 23 H 0.086 0.914 24 C -0.192 4.192 25 C -0.255 4.255 26 C -0.104 4.104 27 N -0.119 5.119 28 N -0.153 5.153 29 C -0.041 4.041 30 C -0.074 4.074 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.203 0.797 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.020 -16.525 12.645 20.906 hybrid contribution -1.168 1.836 0.333 2.202 sum 0.851 -14.688 12.979 19.619 Atomic orbital electron populations 1.22868 0.80484 1.03220 1.00118 1.87974 1.19990 1.24639 1.94412 1.19880 0.92232 0.86979 0.91439 0.89269 1.21172 0.77297 0.81877 0.91732 1.90700 1.50284 1.53732 1.45901 1.46006 1.67396 1.14128 1.09602 1.21373 1.00998 0.94698 0.81900 1.22663 0.99762 0.92117 0.98656 0.90316 1.21553 0.94479 0.86475 0.95836 1.44457 1.63481 1.00037 1.25260 1.18994 1.29008 0.81956 1.05945 0.90584 1.24798 1.00390 0.97747 0.97418 1.69954 1.42140 1.26861 1.17848 0.86215 0.78038 0.83673 0.77901 1.21223 1.21584 1.21184 1.21215 0.96565 0.87094 0.89170 1.22442 0.96798 0.99785 0.94005 0.91440 1.21690 0.96568 0.99870 1.01046 1.19430 0.98534 0.99047 1.08442 1.23741 0.90074 0.99458 0.97123 1.77442 1.23456 0.97155 1.13833 1.48485 1.14334 1.16383 1.36091 1.21918 0.94168 0.96450 0.91559 1.22253 0.87930 1.00043 0.97183 0.93956 0.93486 0.89220 0.76727 0.91452 0.91758 0.94803 0.96368 0.93688 0.94080 0.93322 0.93633 0.92766 0.92777 0.79716 0.90349 0.89244 0.89188 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.81 101.05 1.09 1.37 16 2 O -0.35 -4.28 9.67 -55.09 -0.53 -4.81 16 3 C 0.16 1.73 2.95 -29.04 -0.09 1.64 16 4 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16 5 C 0.49 6.83 7.12 -10.99 -0.08 6.76 16 6 O -0.53 -9.37 16.51 -14.30 -0.24 -9.61 16 7 N -0.72 -9.20 5.36 -60.30 -0.32 -9.53 16 8 C 0.13 1.96 5.13 -4.04 -0.02 1.94 16 9 C -0.11 -1.83 2.55 -88.47 -0.23 -2.06 16 10 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 11 C 0.14 2.77 6.41 -2.53 -0.02 2.75 16 12 N -0.61 -15.00 3.39 -170.07 -0.58 -15.58 16 13 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 14 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 15 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -26.65 10.31 55.49 0.57 -26.07 16 17 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.18 4.36 4.97 -3.06 -0.02 4.34 16 22 C -0.11 -1.99 3.01 -88.78 -0.27 -2.26 16 23 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 24 C -0.13 -2.11 9.17 37.16 0.34 -1.77 16 25 C -0.24 -2.60 5.06 -105.06 -0.53 -3.13 16 26 C 0.08 0.99 11.71 -17.36 -0.20 0.79 16 27 N -0.30 -3.68 12.57 30.62 0.39 -3.29 16 28 N -0.37 -3.57 4.01 -68.16 -0.27 -3.84 16 29 C 0.10 0.56 11.47 59.85 0.69 1.24 16 30 C 0.07 0.64 11.40 -17.22 -0.20 0.44 16 31 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 4.33 8.34 -40.82 -0.34 3.99 16 35 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 41 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 45 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -35.36 404.75 -7.89 -43.24 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.21 Total: 1.44 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.23 Total: 5.33 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.22 Total: -58.32 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.77 Total: -14.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.36 -7.89 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102195109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.151 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds