Wall clock time and date at job start Tue Mar 31 2020 19:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00196 * 2 1 4 4 H 1.09004 * 109.46464 * 30.00421 * 3 2 1 5 5 C 1.50699 * 109.47389 * 270.00360 * 3 2 1 6 6 O 1.21286 * 120.00155 * 355.00169 * 5 3 2 7 7 N 1.34771 * 120.00138 * 174.99702 * 5 3 2 8 8 C 1.46504 * 120.00135 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.89377 * 57.42461 * 9 8 7 11 11 C 1.54912 * 111.00343 * 293.54458 * 9 8 7 12 12 N 1.47426 * 104.83261 * 204.88065 * 11 9 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 9 14 14 H 1.08005 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47563 * 59.99703 * 17 15 13 19 19 H 1.48504 * 109.46777 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47166 * 299.99426 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 9 22 22 C 1.54327 * 107.26774 * 358.94057 * 21 12 11 23 23 H 1.08996 * 110.72159 * 96.17410 * 22 21 12 24 24 C 1.53002 * 110.87100 * 219.37132 * 22 21 12 25 25 C 1.50696 * 109.46881 * 149.99998 * 3 2 1 26 26 C 1.39869 * 126.03832 * 40.03151 * 25 3 2 27 27 N 1.30838 * 108.19843 * 179.97438 * 26 25 3 28 28 N 1.40077 * 108.21000 * 0.02562 * 27 26 25 29 29 C 1.46497 * 126.04033 * 179.97438 * 28 27 26 30 30 C 1.34951 * 107.92221 * 359.75807 * 28 27 26 31 31 H 1.09004 * 109.47002 * 299.99763 * 1 2 3 32 32 H 1.09005 * 109.47567 * 59.99306 * 1 2 3 33 33 H 1.08995 * 109.47554 * 179.97438 * 1 2 3 34 34 H 0.97006 * 119.99699 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47113 * 60.00388 * 8 7 5 36 36 H 1.08995 * 109.46648 * 299.99912 * 8 7 5 37 37 H 1.09002 * 110.36496 * 86.04481 * 11 9 8 38 38 H 1.08997 * 110.36790 * 323.72116 * 11 9 8 39 39 H 0.97001 * 119.99407 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.88316 * 118.35549 * 21 12 11 41 41 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 42 42 H 1.08997 * 109.46866 * 173.61176 * 24 22 21 43 43 H 1.08995 * 109.47083 * 293.61308 * 24 22 21 44 44 H 1.09007 * 109.46846 * 53.61045 * 24 22 21 45 45 H 1.07993 * 125.90366 * 359.97438 * 26 25 3 46 46 H 1.08999 * 109.47736 * 89.97344 * 29 28 27 47 47 H 1.09003 * 109.47195 * 209.97429 * 29 28 27 48 48 H 1.09008 * 109.47322 * 329.97124 * 29 28 27 49 49 H 1.07999 * 126.12394 * 180.24368 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2145 1.7645 -1.4208 6 8 1.9790 1.0108 -2.3414 7 7 2.6588 3.0125 -1.6685 8 6 2.8579 3.4585 -3.0497 9 6 3.3637 4.9025 -3.0514 10 1 4.2868 4.9917 -2.4787 11 6 2.2808 5.8708 -2.5134 12 7 2.6109 7.1767 -3.1127 13 6 2.2549 8.3991 -2.6084 14 1 1.6821 8.4603 -1.6948 15 6 2.6294 9.5594 -3.2720 16 7 3.3269 9.4846 -4.3856 17 14 2.1444 11.2269 -2.5837 18 1 2.7214 11.3885 -1.2251 19 1 2.6624 12.2985 -3.4717 20 1 0.6642 11.3193 -2.5071 21 6 3.3800 6.9491 -4.3448 22 6 3.5556 5.4237 -4.5001 23 1 2.7930 5.0131 -5.1619 24 6 4.9559 5.0859 -5.0160 25 6 3.3386 1.2638 0.7104 26 6 4.2925 0.2455 0.6126 27 7 5.3096 0.5642 1.3715 28 7 5.0345 1.7967 1.9774 29 6 5.9109 2.5157 2.9054 30 6 3.8214 2.2072 1.5517 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8474 3.6152 -0.9322 35 1 1.9124 3.4038 -3.5891 36 1 3.5917 2.8163 -3.5366 37 1 2.3304 5.9290 -1.4261 38 1 1.2901 5.5467 -2.8320 39 1 3.5889 10.2955 -4.8491 40 1 2.8360 7.3486 -5.2006 41 1 4.3558 7.4285 -4.2666 42 1 5.0944 4.0048 -5.0095 43 1 5.0685 5.4606 -6.0333 44 1 5.7023 5.5517 -4.3725 45 1 4.2047 -0.6491 0.0142 46 1 6.5672 3.1807 2.3440 47 1 5.3054 3.1016 3.5970 48 1 6.5123 1.7998 3.4658 49 1 3.3243 3.1236 1.8336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102195109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:33 Heat of formation + Delta-G solvation = 0.783249 kcal Electronic energy + Delta-G solvation = -29711.698791 eV Core-core repulsion = 25675.686205 eV Total energy + Delta-G solvation = -4036.012586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31801 -40.86080 -39.66387 -38.24062 -35.98486 -34.72161 -34.24537 -32.53973 -32.46542 -30.70353 -29.12286 -27.85137 -27.18622 -26.94102 -25.95452 -24.30444 -22.32987 -21.98447 -21.53556 -21.33781 -20.62887 -18.92896 -18.45427 -18.10159 -17.53259 -16.94325 -16.68255 -16.34141 -16.22075 -15.91914 -15.71842 -15.49875 -15.28516 -15.14761 -14.65912 -14.42602 -14.19406 -14.06776 -13.90875 -13.55173 -13.43848 -13.41099 -13.27096 -13.09209 -12.96053 -12.82242 -12.61816 -12.43003 -12.34255 -11.96001 -11.82046 -11.68423 -11.55487 -11.52700 -11.36626 -11.29019 -10.67353 -10.46780 -10.36167 -10.04057 -9.41788 -8.86721 -7.81724 -5.17336 0.88551 1.47774 1.49957 1.50823 1.57048 1.64196 1.80795 2.11927 2.51851 2.96315 3.36504 3.62781 3.66537 3.72815 3.90323 3.93632 3.95860 3.97835 4.12736 4.21815 4.34503 4.38369 4.49087 4.51055 4.56070 4.60373 4.61357 4.74448 4.76135 4.82757 4.84776 4.86584 4.89675 4.93743 4.98502 5.08781 5.17211 5.33477 5.41296 5.49700 5.50673 5.56315 5.72776 5.83289 6.03795 6.12590 6.22601 6.60153 6.68738 7.12861 7.27153 7.81236 8.46129 9.28460 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002875 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.579854 B = 9737.029658 C =10372.850660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.165 3.835 4 H 0.123 0.877 5 C 0.494 3.506 6 O -0.575 6.575 7 N -0.709 5.709 8 C 0.146 3.854 9 C -0.089 4.089 10 H 0.086 0.914 11 C 0.140 3.860 12 N -0.629 5.629 13 C -0.241 4.241 14 H 0.087 0.913 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.977 3.023 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.278 1.278 21 C 0.194 3.806 22 C -0.103 4.103 23 H 0.072 0.928 24 C -0.128 4.128 25 C -0.260 4.260 26 C 0.064 3.936 27 N -0.333 5.333 28 N -0.373 5.373 29 C 0.091 3.909 30 C 0.090 3.910 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.412 0.588 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.245 0.755 40 H -0.002 1.002 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.177 0.823 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 -15.744 15.437 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.103 3.897 4 H 0.141 0.859 5 C 0.280 3.720 6 O -0.454 6.454 7 N -0.362 5.362 8 C 0.022 3.978 9 C -0.109 4.109 10 H 0.104 0.896 11 C 0.015 3.985 12 N -0.355 5.355 13 C -0.370 4.370 14 H 0.105 0.895 15 C -0.260 4.260 16 N -0.602 5.602 17 Si 0.805 3.195 18 H -0.199 1.199 19 H -0.225 1.225 20 H -0.205 1.205 21 C 0.069 3.931 22 C -0.123 4.123 23 H 0.091 0.909 24 C -0.185 4.185 25 C -0.273 4.273 26 C -0.122 4.122 27 N -0.155 5.155 28 N -0.154 5.154 29 C -0.049 4.049 30 C -0.059 4.059 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.248 0.752 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.034 0.966 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.194 0.806 46 H 0.102 0.898 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.565 -16.518 15.296 22.566 hybrid contribution -1.042 1.820 -0.434 2.141 sum 0.523 -14.698 14.862 20.909 Atomic orbital electron populations 1.23026 0.79263 1.04203 1.00640 1.87960 1.21472 1.25571 1.94322 1.19899 0.93094 0.87247 0.89501 0.85947 1.21799 0.76072 0.81384 0.92706 1.90680 1.52234 1.54905 1.47546 1.45871 1.66928 1.14234 1.09178 1.21105 1.00464 0.93211 0.83063 1.22445 0.99055 0.92388 0.96976 0.89564 1.21736 0.95190 0.84708 0.96886 1.44785 1.63494 1.01327 1.25854 1.19461 1.28288 0.83189 1.06081 0.89540 1.25651 1.01036 1.01372 0.97971 1.70194 1.43672 1.27029 1.19255 0.85173 0.77832 0.79058 0.77397 1.19892 1.22507 1.20453 1.20944 0.94020 0.90563 0.87621 1.22322 0.98615 0.95666 0.95656 0.90938 1.21634 0.94597 1.01504 1.00774 1.19483 0.98420 0.99546 1.09801 1.23793 0.90860 1.00003 0.97496 1.77374 1.24137 0.99081 1.14874 1.48836 1.15037 1.15617 1.35868 1.22260 0.94579 0.96522 0.91524 1.22860 0.87192 1.00440 0.95393 0.91440 0.94780 0.88244 0.75236 0.92353 0.91619 0.92683 0.96405 0.94581 0.98397 0.96601 0.90953 0.92765 0.93304 0.80562 0.89822 0.86063 0.89096 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.64 16 2 O -0.38 -8.62 9.67 -129.99 -1.26 -9.88 16 3 C 0.17 3.24 2.95 29.10 0.09 3.33 16 4 H 0.12 1.54 7.78 -2.38 -0.02 1.52 16 5 C 0.49 12.80 7.12 87.66 0.62 13.42 16 6 O -0.57 -20.00 16.51 15.94 0.26 -19.73 16 7 N -0.71 -16.31 5.36 -463.07 -2.48 -18.80 16 8 C 0.15 3.95 5.13 86.38 0.44 4.40 16 9 C -0.09 -2.73 2.55 -9.40 -0.02 -2.76 16 10 H 0.09 2.58 8.05 -2.39 -0.02 2.56 16 11 C 0.14 5.15 6.41 86.86 0.56 5.71 16 12 N -0.63 -31.04 3.39 -691.96 -2.35 -33.39 16 13 C -0.24 -13.04 10.28 84.03 0.86 -12.18 16 14 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 15 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 16 N -0.95 -56.85 10.31 21.65 0.22 -56.62 16 17 Si 0.98 44.58 29.55 68.60 2.03 46.61 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 21 C 0.19 9.39 4.97 86.73 0.43 9.83 16 22 C -0.10 -3.64 3.01 -9.60 -0.03 -3.67 16 23 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 24 C -0.13 -3.85 9.17 71.98 0.66 -3.19 16 25 C -0.26 -5.01 5.06 -20.15 -0.10 -5.11 16 26 C 0.06 1.51 11.71 85.24 1.00 2.51 16 27 N -0.33 -7.93 12.57 -57.03 -0.72 -8.65 16 28 N -0.37 -6.19 4.01 -369.56 -1.48 -7.67 16 29 C 0.09 0.74 11.47 127.77 1.47 2.20 16 30 C 0.09 1.24 11.40 83.54 0.95 2.19 16 31 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 32 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 7.40 8.34 -92.70 -0.77 6.63 16 35 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 39 H 0.24 14.34 8.31 -92.71 -0.77 13.56 16 40 H 0.00 -0.12 7.51 -2.39 -0.02 -0.14 16 41 H 0.02 0.86 7.02 -2.39 -0.02 0.84 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 1.52 8.07 -2.38 -0.02 1.50 16 45 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -79.92 404.75 3.01 -76.92 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.16 Total: 16.21 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 8.62 Total: 15.01 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -6.81 Total: -125.13 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.99 Total: -29.61 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.92 3.01 -76.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102195109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.700 kcal (2) G-P(sol) polarization free energy of solvation -79.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds