Wall clock time and date at job start Tue Mar 31 2020 19:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00338 * 2 1 4 4 H 1.08999 * 109.46793 * 29.99597 * 3 2 1 5 5 C 1.50699 * 109.47182 * 149.99821 * 3 2 1 6 6 O 1.21286 * 120.00155 * 5.00201 * 5 3 2 7 7 N 1.34771 * 120.00138 * 184.99735 * 5 3 2 8 8 C 1.46504 * 120.00135 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.89377 * 57.42461 * 9 8 7 11 11 C 1.54912 * 111.00343 * 293.54458 * 9 8 7 12 12 N 1.47426 * 104.83261 * 204.88065 * 11 9 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 9 14 14 H 1.08005 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47341 * 89.99896 * 17 15 13 19 19 H 1.48503 * 109.46756 * 209.99724 * 17 15 13 20 20 H 1.48496 * 109.46957 * 329.99498 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 9 22 22 C 1.54327 * 107.26774 * 358.94057 * 21 12 11 23 23 H 1.08996 * 110.72159 * 96.17410 * 22 21 12 24 24 C 1.53002 * 110.87100 * 219.37132 * 22 21 12 25 25 C 1.50705 * 109.46901 * 269.99917 * 3 2 1 26 26 C 1.39871 * 126.03745 * 324.68810 * 25 3 2 27 27 N 1.30837 * 108.19988 * 179.82190 * 26 25 3 28 28 N 1.40084 * 108.20382 * 0.43826 * 27 26 25 29 29 C 1.46500 * 126.03934 * 179.70111 * 28 27 26 30 30 C 1.34941 * 107.92673 * 359.71884 * 28 27 26 31 31 H 1.09000 * 109.47587 * 300.00330 * 1 2 3 32 32 H 1.09006 * 109.47183 * 60.00300 * 1 2 3 33 33 H 1.09002 * 109.47444 * 179.97438 * 1 2 3 34 34 H 0.97006 * 119.99699 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47113 * 60.00388 * 8 7 5 36 36 H 1.08995 * 109.46648 * 299.99912 * 8 7 5 37 37 H 1.09002 * 110.36496 * 86.04481 * 11 9 8 38 38 H 1.08997 * 110.36790 * 323.72116 * 11 9 8 39 39 H 0.97001 * 119.99407 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.88316 * 118.35549 * 21 12 11 41 41 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 42 42 H 1.08997 * 109.46866 * 173.61176 * 24 22 21 43 43 H 1.08995 * 109.47083 * 293.61308 * 24 22 21 44 44 H 1.09007 * 109.46846 * 53.61045 * 24 22 21 45 45 H 1.07998 * 125.89928 * 0.02562 * 26 25 3 46 46 H 1.09007 * 109.47302 * 270.02608 * 29 28 27 47 47 H 1.08998 * 109.47234 * 30.02101 * 29 28 27 48 48 H 1.08997 * 109.47635 * 150.02271 * 29 28 27 49 49 H 1.08006 * 126.13114 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3386 1.2638 0.7104 6 8 3.7897 0.2043 1.0914 7 7 4.0255 2.4038 0.9224 8 6 5.3166 2.3634 1.6135 9 6 5.8807 3.7813 1.7237 10 1 5.1832 4.4378 2.2439 11 6 6.2383 4.3467 0.3265 12 7 7.2751 5.3626 0.5845 13 6 7.5707 6.4253 -0.2271 14 1 7.0228 6.5716 -1.1462 15 6 8.5752 7.3138 0.1312 16 7 9.2431 7.1352 1.2512 17 14 8.9779 8.7638 -0.9754 18 1 8.1477 9.9310 -0.5838 19 1 10.4153 9.1094 -0.8350 20 1 8.6909 8.4037 -2.3872 21 6 7.9435 5.0421 1.8542 22 6 7.2663 3.7769 2.4218 23 1 7.8306 2.8839 2.1532 24 6 7.1077 3.8781 3.9402 25 6 2.2146 1.7642 -1.4209 26 6 2.5694 0.9539 -2.5043 27 7 2.6484 1.7084 -3.5703 28 7 2.3557 3.0263 -3.1964 29 6 2.3382 4.1908 -4.0851 30 6 2.0930 3.0339 -1.8728 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.6646 3.2512 0.6179 35 1 6.0104 1.7387 1.0510 36 1 5.1812 1.9480 2.6121 37 1 5.3627 4.8063 -0.1322 38 1 6.6319 3.5568 -0.3131 39 1 9.9448 7.7563 1.5016 40 1 9.0015 4.8488 1.6777 41 1 7.8274 5.8702 2.5535 42 1 6.5282 3.0289 4.3024 43 1 8.0915 3.8733 4.4094 44 1 6.5903 4.8043 4.1905 45 1 2.7445 -0.1112 -2.4679 46 1 3.3291 4.6445 -4.1091 47 1 2.0583 3.8763 -5.0905 48 1 1.6144 4.9179 -3.7172 49 1 1.8328 3.8985 -1.2801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102195110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:39 Heat of formation + Delta-G solvation = 25.816254 kcal Electronic energy + Delta-G solvation = -29925.404474 eV Core-core repulsion = 25890.477401 eV Total energy + Delta-G solvation = -4034.927074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52279 -39.69810 -38.20339 -37.38067 -34.60458 -33.53840 -32.95609 -31.52378 -30.74281 -29.38509 -28.32803 -26.70933 -26.12268 -25.57167 -24.68451 -22.75493 -21.32998 -21.16574 -20.32483 -19.95845 -19.20439 -17.63509 -17.30528 -16.74558 -16.60724 -15.79472 -15.57510 -15.29032 -15.12584 -14.75573 -14.53675 -14.38347 -14.01893 -13.78539 -13.47016 -13.21262 -13.13947 -12.92236 -12.84685 -12.69137 -12.53599 -12.42688 -11.80094 -11.67249 -11.57617 -11.39803 -11.21024 -10.88940 -10.84300 -10.79505 -10.27467 -10.14216 -10.02047 -9.94776 -9.87677 -9.67233 -9.60550 -9.52705 -8.90658 -8.62973 -8.59649 -6.85228 -5.73827 -3.07331 1.63992 2.29839 2.47976 2.80412 2.90183 3.36083 3.41058 3.43554 3.95879 4.31256 4.45985 4.55879 4.71192 4.81554 4.87963 4.95170 5.07342 5.11813 5.20173 5.21687 5.22452 5.24179 5.32442 5.47009 5.51108 5.56309 5.57731 5.66250 5.76799 5.88966 6.02821 6.11579 6.18683 6.28571 6.42489 6.47766 6.49589 6.55376 6.62259 6.72206 6.76022 6.87344 6.94310 7.50443 7.53572 7.59924 7.63612 7.81715 8.23737 8.31713 9.19438 9.79895 10.46472 11.37678 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.003391 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.700740 B = 8255.314893 C =10382.233052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.157 3.843 4 H 0.088 0.912 5 C 0.519 3.481 6 O -0.524 6.524 7 N -0.719 5.719 8 C 0.135 3.865 9 C -0.112 4.112 10 H 0.080 0.920 11 C 0.145 3.855 12 N -0.606 5.606 13 C -0.229 4.229 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.184 3.816 22 C -0.111 4.111 23 H 0.067 0.933 24 C -0.134 4.134 25 C -0.271 4.271 26 C 0.080 3.920 27 N -0.296 5.296 28 N -0.369 5.369 29 C 0.099 3.901 30 C 0.073 3.927 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.185 0.815 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.916 -7.995 -2.487 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.094 3.906 4 H 0.106 0.894 5 C 0.303 3.697 6 O -0.399 6.399 7 N -0.372 5.372 8 C 0.012 3.988 9 C -0.132 4.132 10 H 0.098 0.902 11 C 0.018 3.982 12 N -0.332 5.332 13 C -0.357 4.357 14 H 0.093 0.907 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.059 3.941 22 C -0.130 4.130 23 H 0.086 0.914 24 C -0.192 4.192 25 C -0.284 4.284 26 C -0.106 4.106 27 N -0.117 5.117 28 N -0.150 5.150 29 C -0.042 4.042 30 C -0.075 4.075 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.202 0.798 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.066 -8.586 -3.595 20.323 hybrid contribution -0.205 1.573 0.079 1.588 sum -18.271 -7.012 -3.516 19.883 Atomic orbital electron populations 1.22849 0.80744 1.03029 0.99970 1.88029 1.19529 1.24667 1.94638 1.19881 0.93393 0.86521 0.90758 0.89413 1.20187 0.86049 0.84213 0.79228 1.90711 1.69204 1.29676 1.50302 1.45880 1.22114 1.09174 1.60009 1.21383 0.83240 0.97525 0.96674 1.22667 0.97475 0.94043 0.99022 0.90187 1.21529 0.91989 0.91653 0.93008 1.44464 1.38559 1.27339 1.22871 1.19018 1.14934 1.00593 1.01168 0.90655 1.24795 0.98631 0.99279 0.97695 1.69962 1.25639 1.38006 1.23149 0.86142 0.77482 0.82546 0.79718 1.21634 1.21641 1.20781 1.21217 0.94729 0.91103 0.87018 1.22444 0.94845 1.01051 0.94702 0.91431 1.21690 1.01260 1.00858 0.95344 1.20159 1.18196 0.93332 0.96674 1.23709 0.97309 1.00343 0.89253 1.77446 1.23416 0.87326 1.23540 1.48513 1.52653 1.07280 1.06564 1.21938 1.03904 0.84050 0.94356 1.22284 1.00683 0.98783 0.85772 0.93941 0.93876 0.89269 0.76764 0.91445 0.91566 0.94968 0.96454 0.93741 0.94096 0.93280 0.93590 0.92778 0.92736 0.79791 0.90081 0.89243 0.89310 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.34 16 2 O -0.35 -4.24 9.60 -55.09 -0.53 -4.76 16 3 C 0.16 1.73 2.96 -29.03 -0.09 1.64 16 4 H 0.09 0.70 7.79 -51.93 -0.40 0.29 16 5 C 0.52 7.33 7.17 -10.99 -0.08 7.25 16 6 O -0.52 -9.58 16.51 -14.31 -0.24 -9.82 16 7 N -0.72 -9.23 5.36 -60.30 -0.32 -9.55 16 8 C 0.14 1.97 5.13 -4.04 -0.02 1.95 16 9 C -0.11 -1.83 2.55 -88.47 -0.23 -2.05 16 10 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 11 C 0.14 2.85 6.41 -2.53 -0.02 2.84 16 12 N -0.61 -15.10 3.39 -170.07 -0.58 -15.67 16 13 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 14 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.18 4.36 4.97 -3.06 -0.02 4.34 16 22 C -0.11 -1.99 3.01 -88.78 -0.27 -2.26 16 23 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 24 C -0.13 -2.06 9.17 37.16 0.34 -1.71 16 25 C -0.27 -2.98 5.05 -105.05 -0.53 -3.51 16 26 C 0.08 1.01 11.64 -17.36 -0.20 0.81 16 27 N -0.30 -3.93 12.58 30.62 0.39 -3.54 16 28 N -0.37 -3.93 4.01 -68.16 -0.27 -4.20 16 29 C 0.10 0.69 11.47 59.85 0.69 1.38 16 30 C 0.07 0.68 11.40 -17.23 -0.20 0.48 16 31 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 4.28 8.34 -40.82 -0.34 3.94 16 35 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 41 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 45 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.18 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -35.74 404.66 -7.88 -43.62 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.21 Total: 1.45 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 0.23 Total: 5.78 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.22 Total: -59.08 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.77 Total: -14.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.74 -7.88 -43.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102195110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.441 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds