Wall clock time and date at job start Tue Mar 31 2020 19:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00338 * 2 1 4 4 H 1.08999 * 109.46793 * 29.99597 * 3 2 1 5 5 C 1.50699 * 109.47182 * 149.99821 * 3 2 1 6 6 O 1.21286 * 120.00155 * 5.00201 * 5 3 2 7 7 N 1.34771 * 120.00138 * 184.99735 * 5 3 2 8 8 C 1.46504 * 120.00135 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.89377 * 57.42461 * 9 8 7 11 11 C 1.54912 * 111.00343 * 293.54458 * 9 8 7 12 12 N 1.47426 * 104.83261 * 204.88065 * 11 9 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 9 14 14 H 1.08005 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47341 * 89.99896 * 17 15 13 19 19 H 1.48503 * 109.46756 * 209.99724 * 17 15 13 20 20 H 1.48496 * 109.46957 * 329.99498 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 9 22 22 C 1.54327 * 107.26774 * 358.94057 * 21 12 11 23 23 H 1.08996 * 110.72159 * 96.17410 * 22 21 12 24 24 C 1.53002 * 110.87100 * 219.37132 * 22 21 12 25 25 C 1.50705 * 109.46901 * 269.99917 * 3 2 1 26 26 C 1.39871 * 126.03745 * 324.68810 * 25 3 2 27 27 N 1.30837 * 108.19988 * 179.82190 * 26 25 3 28 28 N 1.40084 * 108.20382 * 0.43826 * 27 26 25 29 29 C 1.46500 * 126.03934 * 179.70111 * 28 27 26 30 30 C 1.34941 * 107.92673 * 359.71884 * 28 27 26 31 31 H 1.09000 * 109.47587 * 300.00330 * 1 2 3 32 32 H 1.09006 * 109.47183 * 60.00300 * 1 2 3 33 33 H 1.09002 * 109.47444 * 179.97438 * 1 2 3 34 34 H 0.97006 * 119.99699 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47113 * 60.00388 * 8 7 5 36 36 H 1.08995 * 109.46648 * 299.99912 * 8 7 5 37 37 H 1.09002 * 110.36496 * 86.04481 * 11 9 8 38 38 H 1.08997 * 110.36790 * 323.72116 * 11 9 8 39 39 H 0.97001 * 119.99407 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.88316 * 118.35549 * 21 12 11 41 41 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 42 42 H 1.08997 * 109.46866 * 173.61176 * 24 22 21 43 43 H 1.08995 * 109.47083 * 293.61308 * 24 22 21 44 44 H 1.09007 * 109.46846 * 53.61045 * 24 22 21 45 45 H 1.07998 * 125.89928 * 0.02562 * 26 25 3 46 46 H 1.09007 * 109.47302 * 270.02608 * 29 28 27 47 47 H 1.08998 * 109.47234 * 30.02101 * 29 28 27 48 48 H 1.08997 * 109.47635 * 150.02271 * 29 28 27 49 49 H 1.08006 * 126.13114 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3386 1.2638 0.7104 6 8 3.7897 0.2043 1.0914 7 7 4.0255 2.4038 0.9224 8 6 5.3166 2.3634 1.6135 9 6 5.8807 3.7813 1.7237 10 1 5.1832 4.4378 2.2439 11 6 6.2383 4.3467 0.3265 12 7 7.2751 5.3626 0.5845 13 6 7.5707 6.4253 -0.2271 14 1 7.0228 6.5716 -1.1462 15 6 8.5752 7.3138 0.1312 16 7 9.2431 7.1352 1.2512 17 14 8.9779 8.7638 -0.9754 18 1 8.1477 9.9310 -0.5838 19 1 10.4153 9.1094 -0.8350 20 1 8.6909 8.4037 -2.3872 21 6 7.9435 5.0421 1.8542 22 6 7.2663 3.7769 2.4218 23 1 7.8306 2.8839 2.1532 24 6 7.1077 3.8781 3.9402 25 6 2.2146 1.7642 -1.4209 26 6 2.5694 0.9539 -2.5043 27 7 2.6484 1.7084 -3.5703 28 7 2.3557 3.0263 -3.1964 29 6 2.3382 4.1908 -4.0851 30 6 2.0930 3.0339 -1.8728 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.6646 3.2512 0.6179 35 1 6.0104 1.7387 1.0510 36 1 5.1812 1.9480 2.6121 37 1 5.3627 4.8063 -0.1322 38 1 6.6319 3.5568 -0.3131 39 1 9.9448 7.7563 1.5016 40 1 9.0015 4.8488 1.6777 41 1 7.8274 5.8702 2.5535 42 1 6.5282 3.0289 4.3024 43 1 8.0915 3.8733 4.4094 44 1 6.5903 4.8043 4.1905 45 1 2.7445 -0.1112 -2.4679 46 1 3.3291 4.6445 -4.1091 47 1 2.0583 3.8763 -5.0905 48 1 1.6144 4.9179 -3.7172 49 1 1.8328 3.8985 -1.2801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102195110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:38 Heat of formation + Delta-G solvation = 1.170614 kcal Electronic energy + Delta-G solvation = -29926.473189 eV Core-core repulsion = 25890.477401 eV Total energy + Delta-G solvation = -4035.995789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33089 -40.79834 -39.63347 -38.35240 -36.00163 -34.71298 -34.20491 -32.54467 -32.42672 -30.69450 -29.16688 -27.83017 -27.34941 -26.85129 -25.87010 -24.31314 -22.30497 -22.03692 -21.52692 -21.34976 -20.61160 -18.92038 -18.41369 -18.13620 -17.47659 -16.99683 -16.63810 -16.30295 -16.13122 -16.09870 -15.75477 -15.50454 -15.28855 -15.12918 -14.65940 -14.44038 -14.17070 -14.02870 -13.94318 -13.56774 -13.43750 -13.42656 -13.28835 -13.11028 -13.04307 -12.81243 -12.67336 -12.39306 -12.26209 -11.93482 -11.82987 -11.69435 -11.56493 -11.40176 -11.34626 -11.06521 -10.69635 -10.60299 -10.41072 -10.04659 -9.42630 -8.88409 -7.83459 -5.19047 0.88676 1.45763 1.47879 1.48690 1.56108 1.66138 1.83136 1.97352 2.49808 3.13194 3.34642 3.60278 3.61879 3.75420 3.89616 3.96232 3.96667 3.98549 4.09964 4.26647 4.33814 4.39874 4.45523 4.52163 4.60794 4.62235 4.65936 4.73280 4.74453 4.82761 4.83547 4.87176 4.88479 4.94348 4.97595 5.10970 5.19304 5.37098 5.41088 5.47998 5.50150 5.56744 5.72951 5.83294 6.06098 6.15907 6.21289 6.60711 6.68738 7.11505 7.27940 7.79412 8.44340 9.26765 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.003391 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.700740 B = 8255.314893 C =10382.233052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.383 6.383 3 C 0.166 3.834 4 H 0.127 0.873 5 C 0.517 3.483 6 O -0.572 6.572 7 N -0.708 5.708 8 C 0.146 3.854 9 C -0.088 4.088 10 H 0.096 0.904 11 C 0.142 3.858 12 N -0.628 5.628 13 C -0.240 4.240 14 H 0.084 0.916 15 C -0.067 4.067 16 N -0.951 5.951 17 Si 0.976 3.024 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.270 1.270 21 C 0.193 3.807 22 C -0.103 4.103 23 H 0.068 0.932 24 C -0.127 4.127 25 C -0.283 4.283 26 C 0.062 3.938 27 N -0.335 5.335 28 N -0.373 5.373 29 C 0.091 3.909 30 C 0.086 3.914 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.006 0.994 39 H 0.245 0.755 40 H -0.004 1.004 41 H 0.019 0.981 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.177 0.823 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.123 0.877 49 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.655 -6.976 -2.357 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C 0.104 3.896 4 H 0.144 0.856 5 C 0.303 3.697 6 O -0.451 6.451 7 N -0.361 5.361 8 C 0.022 3.978 9 C -0.108 4.108 10 H 0.114 0.886 11 C 0.017 3.983 12 N -0.354 5.354 13 C -0.369 4.369 14 H 0.101 0.899 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.805 3.195 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.195 1.195 21 C 0.068 3.932 22 C -0.123 4.123 23 H 0.087 0.913 24 C -0.184 4.184 25 C -0.295 4.295 26 C -0.123 4.123 27 N -0.157 5.157 28 N -0.154 5.154 29 C -0.049 4.049 30 C -0.062 4.062 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.142 0.858 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -20.853 -7.561 -3.500 22.456 hybrid contribution 0.643 1.245 -0.029 1.402 sum -20.210 -6.316 -3.529 21.466 Atomic orbital electron populations 1.23025 0.78774 1.03983 1.01110 1.87994 1.21738 1.25549 1.94774 1.19847 0.92084 0.87121 0.90580 0.85593 1.20838 0.86968 0.83459 0.78427 1.90690 1.70573 1.31401 1.52391 1.45732 1.21230 1.09745 1.59419 1.21130 0.83739 0.95668 0.97243 1.22469 0.96716 0.95173 0.96421 0.88560 1.21678 0.91232 0.90322 0.95067 1.44792 1.39881 1.27757 1.22948 1.19448 1.14710 1.01109 1.01673 0.89867 1.25642 0.98951 1.02168 0.99212 1.70195 1.26114 1.38794 1.24874 0.85108 0.76521 0.79388 0.78494 1.20873 1.22551 1.19469 1.20969 0.93049 0.92691 0.86534 1.22325 0.95353 0.97928 0.96677 0.91333 1.21635 1.01813 1.02054 0.92917 1.20199 1.19246 0.93821 0.96260 1.23788 0.97863 1.00485 0.90170 1.77375 1.24936 0.88968 1.24430 1.48832 1.51900 1.07037 1.07642 1.22232 1.04736 0.83510 0.94435 1.22927 0.98504 0.99395 0.85395 0.92154 0.93198 0.88618 0.75179 0.93313 0.90422 0.92996 0.97615 0.94522 0.98614 0.96245 0.90524 0.92935 0.92948 0.80570 0.90514 0.89049 0.85842 0.76382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 113.37 1.23 1.59 16 2 O -0.38 -8.67 9.60 -129.99 -1.25 -9.92 16 3 C 0.17 3.22 2.96 29.10 0.09 3.31 16 4 H 0.13 1.43 7.79 -2.39 -0.02 1.41 16 5 C 0.52 13.62 7.17 87.66 0.63 14.25 16 6 O -0.57 -20.58 16.51 15.94 0.26 -20.32 16 7 N -0.71 -16.22 5.36 -463.07 -2.48 -18.70 16 8 C 0.15 3.95 5.13 86.38 0.44 4.39 16 9 C -0.09 -2.68 2.55 -9.40 -0.02 -2.70 16 10 H 0.10 2.69 8.05 -2.39 -0.02 2.67 16 11 C 0.14 5.41 6.41 86.86 0.56 5.97 16 12 N -0.63 -31.37 3.39 -691.96 -2.35 -33.72 16 13 C -0.24 -13.14 10.28 84.03 0.86 -12.28 16 14 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 15 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 16 N -0.95 -56.84 10.31 21.65 0.22 -56.62 16 17 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 C 0.19 9.36 4.97 86.73 0.43 9.79 16 22 C -0.10 -3.63 3.01 -9.60 -0.03 -3.66 16 23 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 24 C -0.13 -3.66 9.17 71.98 0.66 -3.00 16 25 C -0.28 -5.61 5.05 -20.14 -0.10 -5.71 16 26 C 0.06 1.56 11.64 85.24 0.99 2.55 16 27 N -0.34 -8.74 12.58 -57.02 -0.72 -9.46 16 28 N -0.37 -7.12 4.01 -369.57 -1.48 -8.60 16 29 C 0.09 1.04 11.47 127.77 1.47 2.51 16 30 C 0.09 1.31 11.40 83.54 0.95 2.26 16 31 H 0.06 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 7.22 8.34 -92.70 -0.77 6.45 16 35 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.01 0.25 8.00 -2.39 -0.02 0.23 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.00 -0.25 7.51 -2.39 -0.02 -0.27 16 41 H 0.02 1.04 7.02 -2.39 -0.02 1.03 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.54 8.07 -2.38 -0.02 1.52 16 45 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -81.53 404.66 3.01 -78.52 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.16 Total: 15.89 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 8.62 Total: 15.99 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.81 Total: -127.09 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.99 Total: -30.23 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -81.53 3.01 -78.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102195110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.689 kcal (2) G-P(sol) polarization free energy of solvation -81.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds