Wall clock time and date at job start Tue Mar 31 2020 19:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47153 * 2 1 4 4 C 1.47200 * 109.46909 * 240.00116 * 2 1 3 5 5 N 2.60803 * 109.47011 * 240.00218 * 2 1 3 6 6 C 1.50693 * 109.47096 * 120.00219 * 2 1 3 7 7 O 1.21288 * 120.00079 * 120.00068 * 6 2 1 8 8 N 1.34776 * 120.00329 * 299.99744 * 6 2 1 9 9 C 1.46497 * 120.00140 * 179.97438 * 8 6 2 10 10 C 1.53003 * 109.46940 * 180.02562 * 9 8 6 11 11 C 1.53008 * 109.46884 * 180.02562 * 10 9 8 12 12 H 1.08998 * 110.28739 * 52.87678 * 11 10 9 13 13 C 1.54374 * 110.32052 * 290.63628 * 11 10 9 14 14 N 1.48563 * 104.59070 * 217.25263 * 13 11 10 15 15 C 1.46908 * 110.99803 * 159.04346 * 14 13 11 16 16 C 1.50703 * 109.47195 * 61.07270 * 15 14 13 17 17 O 1.21294 * 119.99708 * 6.06086 * 16 15 14 18 18 N 1.34776 * 120.00179 * 186.06331 * 16 15 14 19 19 C 1.37095 * 119.99971 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99768 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99738 * 359.97438 * 21 19 18 23 23 Si 1.86789 * 119.99836 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47423 * 89.99625 * 23 21 19 25 25 H 1.48499 * 109.47219 * 209.99768 * 23 21 19 26 26 H 1.48500 * 109.47276 * 329.99284 * 23 21 19 27 27 C 1.48558 * 104.22550 * 39.48674 * 14 13 11 28 28 C 1.54259 * 110.32143 * 174.99981 * 11 10 9 29 29 H 1.09005 * 110.32502 * 0.02562 * 28 11 10 30 30 C 1.52992 * 110.32548 * 237.89403 * 28 11 10 31 31 H 1.09000 * 109.47155 * 299.99658 * 1 2 3 32 32 H 1.08996 * 109.47355 * 60.00113 * 1 2 3 33 33 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99719 * 0.02562 * 8 6 2 35 35 H 1.08993 * 109.47779 * 300.00519 * 9 8 6 36 36 H 1.09006 * 109.46925 * 60.00969 * 9 8 6 37 37 H 1.08999 * 109.47313 * 299.99997 * 10 9 8 38 38 H 1.08996 * 109.47232 * 60.00737 * 10 9 8 39 39 H 1.08995 * 110.41879 * 336.03155 * 13 11 10 40 40 H 1.08999 * 110.41256 * 98.47477 * 13 11 10 41 41 H 1.08996 * 109.46934 * 181.07180 * 15 14 13 42 42 H 1.08996 * 109.46825 * 301.07611 * 15 14 13 43 43 H 0.96995 * 119.99534 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99323 * 180.02562 * 22 21 19 45 45 H 1.08993 * 110.41136 * 201.74069 * 27 14 13 46 46 H 1.09000 * 110.41219 * 79.29132 * 27 14 13 47 47 H 1.09006 * 109.47256 * 60.00096 * 30 28 11 48 48 H 1.08998 * 109.47318 * 180.02562 * 30 28 11 49 49 H 1.09002 * 109.47401 * 300.00248 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0323 -0.7104 1.2304 7 8 2.7296 -1.6966 1.1191 8 7 1.7068 -0.2500 2.4545 9 6 2.1946 -0.9410 3.6506 10 6 1.6843 -0.2201 4.8999 11 6 2.1944 -0.9414 6.1492 12 1 3.2768 -1.0600 6.1016 13 6 1.5078 -2.3167 6.2920 14 7 1.3021 -2.4823 7.7540 15 6 0.2476 -3.4674 8.0290 16 6 0.6509 -4.8056 7.4651 17 8 1.7563 -4.9546 6.9887 18 7 -0.2168 -5.8366 7.4902 19 6 0.1503 -7.0540 6.9777 20 1 1.1345 -7.1868 6.5535 21 6 -0.7442 -8.1171 7.0040 22 7 -1.9416 -7.9556 7.5206 23 14 -0.2443 -9.7756 6.3051 24 1 0.3782 -10.5963 7.3747 25 1 -1.4453 -10.4742 5.7809 26 1 0.7315 -9.5750 5.2039 27 6 0.9025 -1.1301 8.2219 28 6 1.7962 -0.1608 7.4187 29 1 1.2370 0.7360 7.1519 30 6 3.0412 0.2105 8.2265 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1488 0.5385 2.5436 35 1 1.8310 -1.9685 3.6505 36 1 3.2847 -0.9414 3.6508 37 1 2.0477 0.8075 4.9004 38 1 0.5943 -0.2201 4.8996 39 1 0.5506 -2.3198 5.7707 40 1 2.1537 -3.1059 5.9072 41 1 0.1044 -3.5552 9.1060 42 1 -0.6831 -3.1428 7.5639 43 1 -1.1007 -5.7174 7.8715 44 1 -2.5658 -8.6979 7.5393 45 1 1.0928 -1.0258 9.2900 46 1 -0.1495 -0.9474 8.0025 47 1 3.6973 0.8327 7.6176 48 1 2.7442 0.7605 9.1195 49 1 3.5692 -0.6973 8.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102783908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:41 Heat of formation + Delta-G solvation = -52.854362 kcal Electronic energy + Delta-G solvation = -28756.514373 eV Core-core repulsion = 24718.175886 eV Total energy + Delta-G solvation = -4038.338488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40339 -39.56376 -37.83582 -36.93238 -35.63894 -34.13235 -33.86170 -33.10429 -31.54048 -31.20493 -28.19108 -27.09243 -25.86646 -25.31179 -24.31272 -22.52897 -21.37715 -20.81560 -19.75513 -19.13063 -18.40721 -17.84143 -17.57027 -16.21426 -16.14587 -15.78212 -15.29790 -15.16839 -15.08068 -14.50919 -14.40540 -14.22536 -13.88726 -13.74546 -13.44280 -13.33616 -13.27112 -13.05628 -12.95264 -12.72090 -12.64517 -12.31213 -12.24218 -12.09919 -11.94886 -11.81067 -11.54103 -11.47822 -11.27037 -11.08468 -10.88596 -10.73602 -10.51981 -10.44319 -10.36432 -10.19973 -10.15171 -9.46673 -9.39216 -8.42656 -8.02073 -7.91690 -6.40500 -3.80979 2.14704 2.17689 2.49517 2.98579 3.19629 3.28311 3.34732 3.41227 3.92184 4.07830 4.22585 4.29829 4.33110 4.44981 4.49520 4.58795 4.71639 4.94842 4.99222 5.01081 5.13254 5.15073 5.22295 5.26413 5.39382 5.48422 5.50797 5.52137 5.58047 5.65569 5.75352 5.77771 5.85661 5.90397 5.95054 6.00717 6.08548 6.08953 6.21420 6.29112 6.38581 6.55533 7.02350 7.18422 7.25400 7.26745 7.56976 7.80422 8.07936 8.63208 9.19862 9.55820 10.07670 10.77332 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007416 B = 0.002937 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.485118 B = 9532.430979 C =12553.658147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.140 0.860 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.518 3.482 7 O -0.521 6.521 8 N -0.722 5.722 9 C 0.114 3.886 10 C -0.120 4.120 11 C -0.088 4.088 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.484 5.484 15 C 0.035 3.965 16 C 0.442 3.558 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.032 3.968 28 C -0.088 4.088 29 H 0.072 0.928 30 C -0.140 4.140 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.079 0.921 46 H 0.039 0.961 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 25.185 -4.810 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.301 3.699 7 O -0.396 6.396 8 N -0.375 5.375 9 C -0.008 4.008 10 C -0.158 4.158 11 C -0.107 4.107 12 H 0.103 0.897 13 C -0.087 4.087 14 N -0.208 5.208 15 C -0.097 4.097 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.097 4.097 28 C -0.107 4.107 29 H 0.091 0.909 30 C -0.197 4.197 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.469 23.179 -6.316 24.150 hybrid contribution -1.708 -0.001 0.075 1.709 sum 0.762 23.178 -6.241 24.016 Atomic orbital electron populations 1.21819 0.89504 1.04648 1.04369 1.18838 0.98839 1.00094 0.85702 0.84219 1.28073 0.93914 0.94038 0.94006 1.81210 1.07567 1.07532 1.12185 1.19987 0.80872 0.84830 0.84208 1.90846 1.36868 1.25450 1.86418 1.45887 1.53877 1.32233 1.05460 1.21545 0.99831 0.97147 0.82317 1.21894 1.01257 0.99360 0.93310 1.21984 1.01279 0.94804 0.92653 0.89701 1.23299 0.99684 0.96847 0.88886 1.65166 1.39054 1.03681 1.12919 1.22067 0.92805 0.93068 1.01746 1.19723 0.86520 0.85433 0.85539 1.90503 1.21699 1.83706 1.50186 1.41867 1.15016 1.09552 1.53694 1.19699 1.01190 0.86209 1.35605 0.87913 1.25249 0.95129 0.99985 0.97563 1.69614 1.06101 1.33199 1.45530 0.85873 0.77958 0.81338 0.79254 1.20390 1.20950 1.19377 1.23249 0.96826 0.89451 1.00144 1.21889 0.96738 0.97246 0.94819 0.90929 1.21807 0.97043 1.01683 0.99191 0.89848 0.90206 0.90771 0.76387 0.90427 0.90918 0.91122 0.91195 0.94529 0.87804 0.89237 0.93576 0.77545 0.91914 0.90264 0.94267 0.93027 0.93010 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.48 9.04 37.16 0.34 -0.15 16 2 C -0.01 -0.06 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 4 C 0.22 2.27 13.88 -20.76 -0.29 1.98 16 5 N -0.41 -5.62 18.54 42.15 0.78 -4.84 16 6 C 0.52 4.80 7.14 -10.99 -0.08 4.73 16 7 O -0.52 -7.94 16.03 5.55 0.09 -7.85 16 8 N -0.72 -4.83 5.45 -60.30 -0.33 -5.16 16 9 C 0.11 1.06 5.54 -4.04 -0.02 1.04 16 10 C -0.12 -0.89 4.51 -26.73 -0.12 -1.01 16 11 C -0.09 -0.92 2.71 -89.24 -0.24 -1.17 16 12 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 13 C 0.04 0.61 4.39 -2.18 -0.01 0.60 16 14 N -0.48 -7.75 5.18 -231.41 -1.20 -8.95 16 15 C 0.03 0.62 5.39 -4.97 -0.03 0.59 16 16 C 0.44 10.39 7.43 -10.98 -0.08 10.31 16 17 O -0.58 -15.46 14.01 5.55 0.08 -15.39 16 18 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 C 0.03 0.37 6.04 -2.18 -0.01 0.36 16 28 C -0.09 -0.83 3.30 -89.24 -0.29 -1.13 16 29 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 30 C -0.14 -1.26 8.90 37.15 0.33 -0.93 16 31 H 0.08 0.08 7.56 -51.93 -0.39 -0.32 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.10 7.89 -40.82 -0.32 0.77 16 35 H 0.08 0.96 7.58 -51.93 -0.39 0.56 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.49 7.98 -51.93 -0.41 0.08 16 39 H 0.04 0.55 7.56 -51.93 -0.39 0.16 16 40 H 0.10 1.98 6.53 -51.93 -0.34 1.64 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.05 0.74 7.98 -51.93 -0.41 0.33 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 46 H 0.04 0.43 7.92 -51.93 -0.41 0.02 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -37.10 405.91 -7.79 -44.89 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.93 Total: 6.29 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.04 Total: 6.88 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.08 Total: -57.29 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.10 -7.79 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102783908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.966 kcal (2) G-P(sol) polarization free energy of solvation -37.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds