Wall clock time and date at job start Tue Mar 31 2020 19:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35768 * 117.00069 * 2 1 4 4 C 1.35595 * 126.08972 * 179.64502 * 3 2 1 5 5 C 1.41057 * 107.80176 * 180.17827 * 4 3 2 6 6 C 1.47721 * 125.97945 * 179.86090 * 5 4 3 7 7 O 1.21572 * 120.00307 * 359.72448 * 6 5 4 8 8 N 1.34782 * 119.99690 * 179.71617 * 6 5 4 9 9 C 1.46500 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47041 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46818 * 180.02562 * 10 9 8 12 12 H 1.08995 * 110.64645 * 51.85492 * 11 10 9 13 13 C 1.54338 * 111.00135 * 288.77639 * 11 10 9 14 14 N 1.47015 * 107.26679 * 219.60722 * 13 11 10 15 15 C 1.36936 * 125.65021 * 178.85338 * 14 13 11 16 16 H 1.08005 * 119.99952 * 359.43467 * 15 14 13 17 17 C 1.38807 * 120.00451 * 179.71533 * 15 14 13 18 18 N 1.31623 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46902 * 89.99791 * 19 17 15 21 21 H 1.48499 * 109.47244 * 209.99710 * 19 17 15 22 22 H 1.48500 * 109.47288 * 330.00316 * 19 17 15 23 23 C 1.47422 * 108.70509 * 358.58419 * 14 13 11 24 24 C 1.54910 * 104.83308 * 24.35823 * 23 14 13 25 25 H 1.09005 * 111.00197 * 81.06176 * 24 23 14 26 26 C 1.52996 * 111.00753 * 204.88047 * 24 23 14 27 27 N 1.31864 * 108.03382 * 359.60779 * 5 4 3 28 28 N 1.35848 * 126.08127 * 359.39811 * 3 2 1 29 29 C 1.46498 * 125.94871 * 359.96042 * 28 3 2 30 30 H 1.09003 * 109.47529 * 51.91299 * 1 2 3 31 31 H 1.09003 * 109.47170 * 171.90993 * 1 2 3 32 32 H 1.09000 * 109.47089 * 291.90660 * 1 2 3 33 33 H 1.08002 * 126.09898 * 0.06716 * 4 3 2 34 34 H 0.97002 * 120.00205 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47002 * 60.00755 * 9 8 6 36 36 H 1.08999 * 109.47445 * 300.00752 * 9 8 6 37 37 H 1.08996 * 109.47031 * 60.00253 * 10 9 8 38 38 H 1.08995 * 109.46764 * 300.00604 * 10 9 8 39 39 H 1.08997 * 109.99240 * 100.12912 * 13 11 10 40 40 H 1.09000 * 109.77897 * 338.96350 * 13 11 10 41 41 H 0.97000 * 120.00379 * 179.97438 * 18 17 15 42 42 H 1.09006 * 110.36882 * 143.19813 * 23 14 13 43 43 H 1.08997 * 110.37358 * 265.51971 * 23 14 13 44 44 H 1.08994 * 109.47075 * 58.54427 * 26 24 23 45 45 H 1.08995 * 109.47221 * 178.54641 * 26 24 23 46 46 H 1.09000 * 109.46516 * 298.54328 * 26 24 23 47 47 H 1.08996 * 109.47273 * 277.05108 * 29 28 3 48 48 H 1.08993 * 109.47120 * 37.05483 * 29 28 3 49 49 H 1.09002 * 109.46830 * 157.05218 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.3842 1.4239 0.0068 5 6 3.5979 2.8182 0.0082 6 6 4.9109 3.4950 0.0179 7 8 5.9335 2.8377 0.0306 8 7 4.9751 4.8412 0.0125 9 6 6.2773 5.5124 0.0215 10 6 6.0698 7.0283 0.0134 11 6 7.4297 7.7292 0.0222 12 1 8.0668 7.3420 -0.7729 13 6 8.1221 7.5760 1.3930 14 7 8.7707 8.8591 1.7001 15 6 9.4744 9.1452 2.8394 16 1 9.5810 8.3966 3.6106 17 6 10.0457 10.3992 3.0060 18 7 9.9117 11.3133 2.0684 19 14 11.0050 10.7897 4.5606 20 1 12.4342 10.4388 4.3615 21 1 10.8886 12.2388 4.8633 22 1 10.4550 10.0017 5.6927 23 6 8.5438 9.7847 0.5753 24 6 7.2564 9.2653 -0.1122 25 1 6.3663 9.6058 0.4169 26 6 7.2117 9.6864 -1.5824 27 7 2.4204 3.4116 -0.0061 28 7 1.4304 2.4210 -0.0115 29 6 -0.0164 2.6509 -0.0270 30 1 -0.3634 0.6339 -0.8088 31 1 -0.3634 -1.0175 -0.1446 32 1 -0.3633 0.3834 0.9535 33 1 4.1504 0.6627 0.0121 34 1 4.1592 5.3657 0.0026 35 1 6.8438 5.2183 -0.8620 36 1 6.8275 5.2261 0.9178 37 1 5.5034 7.3222 0.8971 38 1 5.5194 7.3148 -0.8827 39 1 8.8698 6.7844 1.3465 40 1 7.3802 7.3435 2.1570 41 1 10.3106 12.1898 2.1849 42 1 8.3941 10.7997 0.9435 43 1 9.3838 9.7521 -0.1184 44 1 8.0897 9.2980 -2.0984 45 1 6.3105 9.2868 -2.0475 46 1 7.2029 10.7743 -1.6485 47 1 -0.3848 2.5788 -1.0502 48 1 -0.5101 1.9007 0.5907 49 1 -0.2306 3.6443 0.3672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103213215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:22 Heat of formation + Delta-G solvation = 41.995196 kcal Electronic energy + Delta-G solvation = -28454.069409 eV Core-core repulsion = 24419.843907 eV Total energy + Delta-G solvation = -4034.225502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00502 -39.67068 -38.58796 -38.03269 -35.22683 -33.92657 -33.20142 -31.31940 -30.65731 -30.29689 -28.44523 -27.26575 -26.48890 -25.59939 -24.33145 -23.06609 -21.96179 -21.74119 -20.27690 -19.61097 -19.17134 -18.49207 -17.22423 -16.80942 -16.64220 -16.21305 -15.70723 -15.68399 -15.38710 -15.10775 -14.83206 -14.34404 -14.32779 -13.96690 -13.81962 -13.59592 -13.39282 -13.31819 -12.91869 -12.75337 -12.05020 -12.02299 -11.94880 -11.79384 -11.58295 -11.44341 -11.19269 -11.07042 -10.96760 -10.79431 -10.70254 -10.31537 -10.04409 -9.82970 -9.75705 -9.65541 -9.59458 -9.26715 -9.05835 -8.80259 -8.58341 -6.74664 -5.58481 -2.99565 1.03678 1.69257 1.85786 2.38018 3.10858 3.25673 3.44458 3.49324 3.51214 3.76094 4.18147 4.24134 4.47902 4.50236 4.54980 4.63347 4.87229 4.92154 4.96340 5.09072 5.17514 5.36187 5.48602 5.52177 5.55020 5.60153 5.62336 5.73689 5.83476 6.00052 6.02377 6.05845 6.20646 6.30726 6.33106 6.38868 6.43709 6.62634 6.68408 6.76974 6.81914 6.90006 6.94079 7.09738 7.46726 7.62527 7.70921 7.93831 8.08551 8.43975 9.29727 9.90805 10.56497 11.45219 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.001862 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.579254 B =15031.862853 C =15536.197453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.287 6.287 3 C 0.269 3.731 4 C -0.234 4.234 5 C 0.061 3.939 6 C 0.597 3.403 7 O -0.522 6.522 8 N -0.712 5.712 9 C 0.117 3.883 10 C -0.116 4.116 11 C -0.092 4.092 12 H 0.073 0.927 13 C 0.139 3.861 14 N -0.606 5.606 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.159 3.841 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 N -0.250 5.250 28 N -0.393 5.393 29 C 0.076 3.924 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.167 0.833 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.251 0.749 42 H 0.104 0.896 43 H 0.011 0.989 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.356 -18.473 -8.154 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.193 6.193 3 C 0.102 3.898 4 C -0.264 4.264 5 C -0.106 4.106 6 C 0.379 3.621 7 O -0.396 6.396 8 N -0.363 5.363 9 C -0.006 4.006 10 C -0.154 4.154 11 C -0.112 4.112 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.347 4.347 16 H 0.094 0.906 17 C -0.209 4.209 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.034 3.966 24 C -0.135 4.135 25 H 0.086 0.914 26 C -0.191 4.191 27 N -0.081 5.081 28 N -0.190 5.190 29 C -0.064 4.064 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.184 0.816 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.029 0.971 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.118 -17.974 -8.040 31.135 hybrid contribution 0.082 -0.300 0.767 0.827 sum -24.036 -18.274 -7.274 31.057 Atomic orbital electron populations 1.23667 0.77921 1.05428 1.01529 1.86317 1.21659 1.21516 1.89852 1.19571 0.91052 0.78921 1.00251 1.20371 0.91990 0.95663 1.18336 1.21903 0.92789 0.93120 1.02822 1.16865 0.85869 0.82169 0.77158 1.90834 1.34128 1.65166 1.49445 1.45944 1.10734 1.05729 1.73921 1.21595 0.83629 0.92304 1.03049 1.21788 0.98706 0.92472 1.02473 1.22147 0.94393 0.96011 0.98627 0.90876 1.21382 0.94470 0.89891 0.92964 1.44504 1.61711 1.08506 1.18410 1.19096 1.24496 0.97157 0.93986 0.90555 1.24779 1.01260 0.96410 0.98437 1.69809 1.49431 1.04964 1.33008 0.86083 0.79827 0.77248 0.82427 1.21693 1.21729 1.20747 1.21961 0.90007 0.97192 0.87451 1.22630 1.01450 0.93839 0.95539 0.91392 1.21631 1.00415 1.00970 0.96064 1.77704 0.95064 1.11123 1.24244 1.49059 1.06899 1.02928 1.60156 1.22538 0.74524 1.05722 1.03609 0.91706 0.87217 0.91780 0.81575 0.75889 0.91092 0.90606 0.91114 0.91499 0.96195 0.95944 0.93850 0.87806 0.97097 0.93078 0.93853 0.92852 0.90254 0.88602 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.42 101.05 0.95 0.98 16 2 O -0.29 -2.25 10.57 -19.01 -0.20 -2.45 16 3 C 0.27 2.63 7.78 -16.72 -0.13 2.50 16 4 C -0.23 -2.76 10.59 -39.46 -0.42 -3.18 16 5 C 0.06 0.77 7.09 -82.91 -0.59 0.19 16 6 C 0.60 8.46 7.83 -12.38 -0.10 8.36 16 7 O -0.52 -9.03 16.90 5.30 0.09 -8.94 16 8 N -0.71 -8.82 5.55 -61.29 -0.34 -9.16 16 9 C 0.12 1.57 5.56 -4.04 -0.02 1.54 16 10 C -0.12 -1.55 4.74 -26.73 -0.13 -1.68 16 11 C -0.09 -1.57 2.38 -88.78 -0.21 -1.79 16 12 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 13 C 0.14 2.95 6.25 -3.06 -0.02 2.93 16 14 N -0.61 -15.87 3.39 -170.07 -0.58 -16.44 16 15 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 18 N -0.92 -27.33 10.09 55.49 0.56 -26.77 16 19 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.16 3.89 5.36 -2.53 -0.01 3.87 16 24 C -0.11 -2.14 3.09 -88.47 -0.27 -2.41 16 25 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 26 C -0.13 -2.07 9.30 37.16 0.35 -1.72 16 27 N -0.25 -2.82 12.26 33.34 0.41 -2.41 16 28 N -0.39 -3.45 4.04 -68.19 -0.28 -3.73 16 29 C 0.08 0.28 9.59 59.85 0.57 0.86 16 30 H 0.06 0.10 5.92 -51.93 -0.31 -0.20 16 31 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.06 0.10 6.45 -51.93 -0.33 -0.23 16 33 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.41 4.27 8.17 -40.82 -0.33 3.94 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 37 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.10 2.87 5.88 -51.93 -0.31 2.56 16 43 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 44 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.17 7.58 -51.93 -0.39 -0.22 16 48 H 0.10 0.13 4.68 -51.93 -0.24 -0.11 16 49 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -35.34 393.81 -7.43 -42.78 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.73 Total: 0.13 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.28 Total: 3.55 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.22 Total: -58.52 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.11 Total: -11.39 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.34 -7.43 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103213215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.771 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds