Wall clock time and date at job start Tue Mar 31 2020 19:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35768 * 117.00069 * 2 1 4 4 C 1.35595 * 126.08972 * 179.64502 * 3 2 1 5 5 C 1.41057 * 107.80176 * 180.17827 * 4 3 2 6 6 C 1.47721 * 125.97945 * 179.86090 * 5 4 3 7 7 O 1.21572 * 120.00307 * 359.72448 * 6 5 4 8 8 N 1.34782 * 119.99690 * 179.71617 * 6 5 4 9 9 C 1.46500 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47041 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46818 * 180.02562 * 10 9 8 12 12 H 1.08995 * 110.64645 * 51.85492 * 11 10 9 13 13 C 1.54338 * 111.00135 * 288.77639 * 11 10 9 14 14 N 1.47015 * 107.26679 * 219.60722 * 13 11 10 15 15 C 1.36936 * 125.65021 * 178.85338 * 14 13 11 16 16 H 1.08005 * 119.99952 * 359.43467 * 15 14 13 17 17 C 1.38807 * 120.00451 * 179.71533 * 15 14 13 18 18 N 1.31623 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46902 * 89.99791 * 19 17 15 21 21 H 1.48499 * 109.47244 * 209.99710 * 19 17 15 22 22 H 1.48500 * 109.47288 * 330.00316 * 19 17 15 23 23 C 1.47422 * 108.70509 * 358.58419 * 14 13 11 24 24 C 1.54910 * 104.83308 * 24.35823 * 23 14 13 25 25 H 1.09005 * 111.00197 * 81.06176 * 24 23 14 26 26 C 1.52996 * 111.00753 * 204.88047 * 24 23 14 27 27 N 1.31864 * 108.03382 * 359.60779 * 5 4 3 28 28 N 1.35848 * 126.08127 * 359.39811 * 3 2 1 29 29 C 1.46498 * 125.94871 * 359.96042 * 28 3 2 30 30 H 1.09003 * 109.47529 * 51.91299 * 1 2 3 31 31 H 1.09003 * 109.47170 * 171.90993 * 1 2 3 32 32 H 1.09000 * 109.47089 * 291.90660 * 1 2 3 33 33 H 1.08002 * 126.09898 * 0.06716 * 4 3 2 34 34 H 0.97002 * 120.00205 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47002 * 60.00755 * 9 8 6 36 36 H 1.08999 * 109.47445 * 300.00752 * 9 8 6 37 37 H 1.08996 * 109.47031 * 60.00253 * 10 9 8 38 38 H 1.08995 * 109.46764 * 300.00604 * 10 9 8 39 39 H 1.08997 * 109.99240 * 100.12912 * 13 11 10 40 40 H 1.09000 * 109.77897 * 338.96350 * 13 11 10 41 41 H 0.97000 * 120.00379 * 179.97438 * 18 17 15 42 42 H 1.09006 * 110.36882 * 143.19813 * 23 14 13 43 43 H 1.08997 * 110.37358 * 265.51971 * 23 14 13 44 44 H 1.08994 * 109.47075 * 58.54427 * 26 24 23 45 45 H 1.08995 * 109.47221 * 178.54641 * 26 24 23 46 46 H 1.09000 * 109.46516 * 298.54328 * 26 24 23 47 47 H 1.08996 * 109.47273 * 277.05108 * 29 28 3 48 48 H 1.08993 * 109.47120 * 37.05483 * 29 28 3 49 49 H 1.09002 * 109.46830 * 157.05218 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.3842 1.4239 0.0068 5 6 3.5979 2.8182 0.0082 6 6 4.9109 3.4950 0.0179 7 8 5.9335 2.8377 0.0306 8 7 4.9751 4.8412 0.0125 9 6 6.2773 5.5124 0.0215 10 6 6.0698 7.0283 0.0134 11 6 7.4297 7.7292 0.0222 12 1 8.0668 7.3420 -0.7729 13 6 8.1221 7.5760 1.3930 14 7 8.7707 8.8591 1.7001 15 6 9.4744 9.1452 2.8394 16 1 9.5810 8.3966 3.6106 17 6 10.0457 10.3992 3.0060 18 7 9.9117 11.3133 2.0684 19 14 11.0050 10.7897 4.5606 20 1 12.4342 10.4388 4.3615 21 1 10.8886 12.2388 4.8633 22 1 10.4550 10.0017 5.6927 23 6 8.5438 9.7847 0.5753 24 6 7.2564 9.2653 -0.1122 25 1 6.3663 9.6058 0.4169 26 6 7.2117 9.6864 -1.5824 27 7 2.4204 3.4116 -0.0061 28 7 1.4304 2.4210 -0.0115 29 6 -0.0164 2.6509 -0.0270 30 1 -0.3634 0.6339 -0.8088 31 1 -0.3634 -1.0175 -0.1446 32 1 -0.3633 0.3834 0.9535 33 1 4.1504 0.6627 0.0121 34 1 4.1592 5.3657 0.0026 35 1 6.8438 5.2183 -0.8620 36 1 6.8275 5.2261 0.9178 37 1 5.5034 7.3222 0.8971 38 1 5.5194 7.3148 -0.8827 39 1 8.8698 6.7844 1.3465 40 1 7.3802 7.3435 2.1570 41 1 10.3106 12.1898 2.1849 42 1 8.3941 10.7997 0.9435 43 1 9.3838 9.7521 -0.1184 44 1 8.0897 9.2980 -2.0984 45 1 6.3105 9.2868 -2.0475 46 1 7.2029 10.7743 -1.6485 47 1 -0.3848 2.5788 -1.0502 48 1 -0.5101 1.9007 0.5907 49 1 -0.2306 3.6443 0.3672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103213215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:21 Heat of formation + Delta-G solvation = 15.867322 kcal Electronic energy + Delta-G solvation = -28455.202399 eV Core-core repulsion = 24419.843907 eV Total energy + Delta-G solvation = -4035.358492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.72778 -40.69705 -39.71032 -39.16261 -36.51536 -35.02758 -34.49803 -32.57575 -32.49191 -31.11214 -29.12165 -28.47385 -27.54921 -27.02551 -25.72956 -24.26751 -23.20902 -22.50370 -21.48311 -21.14879 -20.54886 -19.24866 -18.84834 -17.74899 -17.52443 -17.10309 -17.05454 -16.58786 -16.31942 -16.19864 -15.99734 -15.58466 -15.44078 -14.99436 -14.88329 -14.63443 -14.55712 -14.16137 -14.02102 -13.90215 -13.67053 -13.46817 -13.34376 -12.85648 -12.76583 -12.71938 -12.43363 -12.38858 -12.29666 -12.18197 -11.94089 -11.83720 -11.77151 -11.49130 -11.33925 -11.22772 -10.93381 -10.72305 -10.34285 -10.06589 -9.55099 -8.85127 -7.75596 -5.19886 0.17739 1.03134 1.07823 1.45439 1.47628 1.56365 1.76700 2.24461 2.26326 2.50204 3.07891 3.32707 3.72161 3.75767 3.80859 3.93766 4.00472 4.09151 4.12852 4.26341 4.28041 4.32751 4.36726 4.39870 4.53266 4.54423 4.65754 4.66557 4.73651 4.75529 4.81810 4.86403 4.98139 5.04167 5.05315 5.14359 5.20904 5.21604 5.30153 5.37287 5.43431 5.47924 5.57622 5.79395 5.87984 6.08555 6.26812 6.34499 6.51216 7.05816 7.13592 7.81708 8.45775 9.25632 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.001862 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.579254 B =15031.862853 C =15536.197453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.300 6.300 3 C 0.281 3.719 4 C -0.265 4.265 5 C 0.043 3.957 6 C 0.596 3.404 7 O -0.563 6.563 8 N -0.699 5.699 9 C 0.123 3.877 10 C -0.100 4.100 11 C -0.078 4.078 12 H 0.079 0.921 13 C 0.133 3.867 14 N -0.630 5.630 15 C -0.239 4.239 16 H 0.076 0.924 17 C -0.069 4.069 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.271 1.271 23 C 0.160 3.840 24 C -0.101 4.101 25 H 0.071 0.929 26 C -0.127 4.127 27 N -0.256 5.256 28 N -0.382 5.382 29 C 0.061 3.939 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.418 0.582 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.013 0.987 40 H 0.026 0.974 41 H 0.247 0.753 42 H 0.068 0.932 43 H -0.017 1.017 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.101 0.899 48 H 0.123 0.877 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.667 -19.406 -8.765 34.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.206 6.206 3 C 0.112 3.888 4 C -0.295 4.295 5 C -0.123 4.123 6 C 0.380 3.620 7 O -0.440 6.440 8 N -0.350 5.350 9 C -0.001 4.001 10 C -0.138 4.138 11 C -0.097 4.097 12 H 0.098 0.902 13 C 0.008 3.992 14 N -0.355 5.355 15 C -0.369 4.369 16 H 0.094 0.906 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.808 3.192 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.196 1.196 23 C 0.035 3.965 24 C -0.121 4.121 25 H 0.089 0.911 26 C -0.184 4.184 27 N -0.088 5.088 28 N -0.181 5.181 29 C -0.077 4.077 30 H 0.100 0.900 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.176 0.824 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.000 1.000 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -27.493 -18.914 -8.659 34.476 hybrid contribution 0.973 -0.097 0.968 1.376 sum -26.520 -19.011 -7.691 33.524 Atomic orbital electron populations 1.24105 0.75201 1.07478 1.03163 1.86336 1.24499 1.20341 1.89453 1.19452 0.90690 0.79921 0.98694 1.20431 0.93293 0.95458 1.20345 1.21612 0.92527 0.93422 1.04763 1.17109 0.86127 0.82413 0.76332 1.90803 1.35659 1.66044 1.51466 1.45784 1.10841 1.05320 1.73088 1.21434 0.83978 0.92453 1.02196 1.21632 0.96413 0.91625 1.04148 1.22048 0.96247 0.95391 0.96050 0.90227 1.21586 0.94318 0.87683 0.95661 1.44853 1.61786 1.10687 1.18193 1.19454 1.24923 0.97421 0.95054 0.90584 1.25632 1.02554 0.96355 1.01590 1.70073 1.50115 1.04969 1.34614 0.85058 0.78213 0.76848 0.79094 1.21512 1.21675 1.19554 1.21781 0.92067 0.95751 0.86903 1.22475 0.98029 0.94430 0.97126 0.91057 1.21592 1.02164 1.01039 0.93625 1.77604 0.95017 1.11968 1.24248 1.49411 1.08191 1.02091 1.58381 1.23063 0.71665 1.07201 1.05791 0.89981 0.85171 0.90126 0.82438 0.74523 0.91048 0.92575 0.90846 0.88389 0.96930 0.95645 0.94377 0.91351 0.99953 0.93267 0.90141 0.93090 0.88042 0.85887 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.01 9.42 113.37 1.07 1.05 16 2 O -0.30 -4.13 10.57 -90.95 -0.96 -5.09 16 3 C 0.28 5.12 7.78 83.46 0.65 5.77 16 4 C -0.26 -6.34 10.59 22.35 0.24 -6.11 16 5 C 0.04 1.08 7.09 42.34 0.30 1.38 16 6 C 0.60 17.02 7.83 86.75 0.68 17.70 16 7 O -0.56 -20.12 16.90 -3.94 -0.07 -20.19 16 8 N -0.70 -16.57 5.55 -466.08 -2.59 -19.16 16 9 C 0.12 3.14 5.56 86.38 0.48 3.63 16 10 C -0.10 -2.42 4.74 30.59 0.14 -2.27 16 11 C -0.08 -2.56 2.38 -9.60 -0.02 -2.58 16 12 H 0.08 2.54 8.02 -2.39 -0.02 2.52 16 13 C 0.13 5.69 6.25 86.74 0.54 6.23 16 14 N -0.63 -33.87 3.39 -691.98 -2.35 -36.22 16 15 C -0.24 -14.04 10.27 84.03 0.86 -13.18 16 16 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 17 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 18 N -0.95 -57.98 10.09 21.65 0.22 -57.76 16 19 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.16 8.07 5.36 86.86 0.47 8.53 16 24 C -0.10 -3.65 3.09 -9.40 -0.03 -3.68 16 25 H 0.07 2.55 8.05 -2.38 -0.02 2.53 16 26 C -0.13 -3.64 9.30 71.98 0.67 -2.97 16 27 N -0.26 -5.41 12.26 -48.43 -0.59 -6.01 16 28 N -0.38 -5.86 4.04 -480.58 -1.94 -7.80 16 29 C 0.06 0.23 9.59 127.77 1.23 1.46 16 30 H 0.08 -0.07 5.92 -2.39 -0.01 -0.08 16 31 H 0.13 -0.20 8.14 -2.39 -0.02 -0.21 16 32 H 0.08 -0.06 6.45 -2.39 -0.02 -0.07 16 33 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.42 7.95 8.17 -92.71 -0.76 7.19 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.68 7.69 -2.39 -0.02 1.66 16 37 H 0.07 1.79 7.95 -2.39 -0.02 1.77 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.07 3.94 5.88 -2.38 -0.01 3.93 16 43 H -0.02 -0.96 8.04 -2.39 -0.02 -0.98 16 44 H 0.05 1.43 8.11 -2.39 -0.02 1.42 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.10 0.01 7.58 -2.39 -0.02 -0.01 16 48 H 0.12 -0.19 4.68 -2.39 -0.01 -0.20 16 49 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -81.02 393.81 1.69 -79.33 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.21 Total: 12.30 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 7.74 Total: 11.37 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -7.25 Total: -126.95 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.03 Total: -25.28 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.02 1.69 -79.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103213215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.197 kcal (2) G-P(sol) polarization free energy of solvation -81.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds