Wall clock time and date at job start Tue Mar 31 2020 19:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35852 * 117.00065 * 2 1 4 4 N 1.30811 * 126.05590 * 0.19909 * 3 2 1 5 5 N 1.39922 * 108.87766 * 180.24515 * 4 3 2 6 6 C 1.46501 * 125.68574 * 179.73834 * 5 4 3 7 7 C 1.34160 * 108.62423 * 359.72412 * 5 4 3 8 8 C 1.38131 * 107.50906 * 0.02562 * 7 5 4 9 9 C 1.47250 * 126.45113 * 179.97438 * 8 7 5 10 10 O 1.21619 * 120.00196 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99556 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99790 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47243 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47515 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.63772 * 51.85599 * 14 13 12 16 16 C 1.54335 * 110.84636 * 288.69230 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.66998 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46860 * 120.00310 * 22 20 18 25 25 H 1.48500 * 109.47264 * 240.00123 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.08995 * 111.00742 * 81.05954 * 27 26 17 29 29 C 1.52998 * 111.00086 * 204.87731 * 27 26 17 30 30 H 1.09003 * 109.47238 * 60.00059 * 1 2 3 31 31 H 1.09006 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47085 * 299.99754 * 1 2 3 33 33 H 1.09002 * 109.46802 * 269.98998 * 6 5 4 34 34 H 1.08998 * 109.47605 * 29.98825 * 6 5 4 35 35 H 1.09001 * 109.47040 * 149.99908 * 6 5 4 36 36 H 1.08005 * 126.24590 * 180.02562 * 7 5 4 37 37 H 0.97000 * 120.00187 * 0.02562 * 11 9 8 38 38 H 1.09005 * 109.47065 * 60.00370 * 12 11 9 39 39 H 1.08992 * 109.47740 * 300.00587 * 12 11 9 40 40 H 1.09004 * 109.47529 * 60.00110 * 13 12 11 41 41 H 1.09005 * 109.47175 * 300.00548 * 13 12 11 42 42 H 1.09007 * 109.99076 * 100.19801 * 16 14 13 43 43 H 1.09002 * 109.78210 * 339.02796 * 16 14 13 44 44 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 46 46 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 47 47 H 1.08996 * 109.47303 * 58.54471 * 29 27 26 48 48 H 1.09006 * 109.46537 * 178.54319 * 29 27 26 49 49 H 1.08996 * 109.47165 * 298.54472 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4530 2.3766 0.0037 5 7 2.4281 3.3800 -0.0034 6 6 2.1703 4.8222 -0.0076 7 6 3.6385 2.8013 -0.0055 8 6 3.4452 1.4336 -0.0003 9 6 4.4955 0.4016 -0.0008 10 8 4.1912 -0.7759 0.0036 11 7 5.7942 0.7620 -0.0063 12 6 6.8393 -0.2647 -0.0063 13 6 8.2140 0.4068 -0.0124 14 6 9.3054 -0.6655 -0.0130 15 1 9.1355 -1.3862 -0.8128 16 6 9.3776 -1.3765 1.3549 17 7 10.7996 -1.5919 1.6601 18 6 11.2923 -2.1751 2.7969 19 1 10.6152 -2.5140 3.5671 20 6 12.6624 -2.3257 2.9619 21 7 13.4878 -1.9074 2.0260 22 14 13.3345 -3.1206 4.5130 23 1 12.2079 -3.5004 5.4028 24 1 14.1098 -4.3344 4.1510 25 1 14.2202 -2.1594 5.2179 26 6 11.6068 -1.0819 0.5369 27 6 10.7098 -0.0192 -0.1456 28 1 10.7547 0.9306 0.3872 29 6 11.0948 0.1611 -1.6154 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.1028 5.1762 -1.0363 34 1 1.2321 5.0251 0.5087 35 1 2.9843 5.3383 0.5015 36 1 4.5903 3.3117 -0.0103 37 1 6.0370 1.7011 -0.0095 38 1 6.7354 -0.8889 -0.8939 39 1 6.7413 -0.8830 0.8860 40 1 8.3176 1.0307 0.8754 41 1 8.3123 1.0253 -0.9045 42 1 8.8600 -2.3345 1.3047 43 1 8.9249 -0.7479 2.1218 44 1 14.4451 -2.0123 2.1414 45 1 12.5240 -0.6233 0.9065 46 1 11.8385 -1.8871 -0.1601 47 1 11.0007 -0.7922 -2.1353 48 1 10.4327 0.8937 -2.0771 49 1 12.1252 0.5104 -1.6808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103306718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:31 Heat of formation + Delta-G solvation = 27.997270 kcal Electronic energy + Delta-G solvation = -28655.563189 eV Core-core repulsion = 24620.730691 eV Total energy + Delta-G solvation = -4034.832498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81346 -39.19591 -38.53646 -38.02685 -35.06921 -33.32621 -33.16684 -31.52057 -30.68201 -30.24226 -28.22777 -27.09576 -26.32452 -25.56154 -24.14527 -22.84499 -21.94858 -21.20725 -20.40235 -19.66998 -19.16882 -18.25839 -17.14961 -16.78489 -16.62048 -16.07949 -15.57090 -15.49829 -15.32477 -15.21017 -14.85850 -14.27301 -14.08464 -13.69101 -13.50366 -13.31610 -13.19031 -13.02563 -12.87247 -12.74348 -12.21794 -12.00212 -11.92801 -11.57374 -11.52431 -11.45140 -11.18007 -11.07445 -10.96227 -10.80052 -10.70720 -10.07079 -9.94619 -9.80875 -9.72664 -9.66034 -9.50489 -9.26459 -9.02311 -8.73711 -8.59630 -6.75476 -5.59571 -3.00530 1.12166 1.79247 1.99856 2.90770 3.31482 3.43204 3.43943 3.48980 3.51450 3.97905 4.22841 4.54186 4.60557 4.67587 4.87269 4.90530 4.96258 4.98225 5.06203 5.18510 5.21856 5.25158 5.36938 5.45018 5.52162 5.60296 5.63158 5.75048 5.84994 6.02321 6.07553 6.21309 6.30760 6.33267 6.34176 6.40425 6.53043 6.62431 6.67436 6.76782 6.88861 6.89882 7.09250 7.25731 7.59982 7.61645 7.70543 7.92738 8.37151 8.42978 9.28909 9.89924 10.55565 11.44255 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002040 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.940812 B =13722.409758 C =14322.638457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.266 6.266 3 C 0.316 3.684 4 N -0.353 5.353 5 N -0.349 5.349 6 C 0.099 3.901 7 C 0.122 3.878 8 C -0.289 4.289 9 C 0.590 3.410 10 O -0.530 6.530 11 N -0.729 5.729 12 C 0.121 3.879 13 C -0.115 4.115 14 C -0.092 4.092 15 H 0.072 0.928 16 C 0.139 3.861 17 N -0.606 5.606 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.158 3.842 27 C -0.115 4.115 28 H 0.067 0.933 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.191 0.809 37 H 0.394 0.606 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.250 0.750 45 H 0.104 0.896 46 H 0.011 0.989 47 H 0.050 0.950 48 H 0.042 0.958 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.299 16.647 -8.049 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.168 6.168 3 C 0.111 3.889 4 N -0.194 5.194 5 N -0.130 5.130 6 C -0.041 4.041 7 C -0.031 4.031 8 C -0.305 4.305 9 C 0.376 3.624 10 O -0.407 6.407 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.154 4.154 14 C -0.112 4.112 15 H 0.091 0.909 16 C 0.013 3.987 17 N -0.332 5.332 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.033 3.967 27 C -0.134 4.134 28 H 0.086 0.914 29 C -0.191 4.191 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.208 0.792 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.122 0.878 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.408 16.080 -7.924 29.484 hybrid contribution 0.966 -0.193 0.761 1.244 sum -22.442 15.887 -7.163 28.414 Atomic orbital electron populations 1.23044 0.77713 1.03901 1.01906 1.86532 1.21774 1.20339 1.88139 1.20429 0.90133 0.85262 0.93098 1.77330 1.13116 0.94592 1.34331 1.47686 1.03182 1.06563 1.55582 1.22028 1.04666 0.73419 1.04018 1.23071 0.91285 0.92130 0.96575 1.19763 0.91923 0.92600 1.26164 1.17066 0.81481 0.87512 0.76301 1.90826 1.82179 1.18044 1.49615 1.45859 1.05494 1.10144 1.76619 1.21469 0.85576 0.90442 1.02758 1.21784 0.92759 0.98640 1.02172 1.22148 0.94080 0.96355 0.98601 0.90912 1.21384 0.87916 0.96392 0.92992 1.44525 0.99538 1.70453 1.18671 1.19147 0.90665 1.30682 0.94143 0.90502 1.24781 0.95879 1.01813 0.98453 1.69816 1.01937 1.52431 1.33045 0.86012 0.78747 0.78557 0.82311 1.20544 1.21814 1.21827 1.21964 0.95029 0.92142 0.87524 1.22624 0.95277 1.00024 0.95502 0.91432 1.21632 1.00618 1.00728 0.96090 0.92502 0.87919 0.92459 0.90098 0.88817 0.88704 0.79249 0.77305 0.91511 0.91011 0.91276 0.91673 0.96208 0.95946 0.93899 0.87802 0.97102 0.93081 0.93880 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 101.05 1.08 1.35 16 2 O -0.27 -3.65 9.98 -24.63 -0.25 -3.90 16 3 C 0.32 4.13 7.85 -16.66 -0.13 4.00 16 4 N -0.35 -3.93 11.90 30.79 0.37 -3.56 16 5 N -0.35 -2.65 3.97 -67.60 -0.27 -2.92 16 6 C 0.10 0.26 11.44 59.85 0.68 0.94 16 7 C 0.12 0.89 10.98 -16.57 -0.18 0.71 16 8 C -0.29 -3.45 6.14 -104.95 -0.64 -4.09 16 9 C 0.59 8.40 7.81 -12.60 -0.10 8.31 16 10 O -0.53 -9.99 16.43 -0.10 0.00 -9.99 16 11 N -0.73 -8.26 5.54 -61.44 -0.34 -8.60 16 12 C 0.12 1.60 5.56 -4.04 -0.02 1.58 16 13 C -0.12 -1.47 4.73 -26.73 -0.13 -1.60 16 14 C -0.09 -1.56 2.39 -88.78 -0.21 -1.77 16 15 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 16 C 0.14 2.95 6.24 -3.06 -0.02 2.93 16 17 N -0.61 -15.82 3.39 -170.06 -0.58 -16.40 16 18 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 21 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.16 3.85 5.36 -2.53 -0.01 3.84 16 27 C -0.11 -2.09 3.09 -88.47 -0.27 -2.37 16 28 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 29 C -0.13 -2.02 9.30 37.16 0.35 -1.67 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.19 0.48 7.46 -52.48 -0.39 0.09 16 37 H 0.39 2.98 7.39 -40.82 -0.30 2.68 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 40 H 0.07 0.88 7.94 -51.93 -0.41 0.46 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.02 0.47 7.69 -51.93 -0.40 0.07 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.10 2.85 5.87 -51.93 -0.31 2.54 16 46 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 47 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -38.07 401.47 -7.42 -45.49 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.08 Total: -2.22 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.14 Total: 5.29 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.26 Total: -58.16 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.25 Total: -13.89 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.07 -7.42 -45.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103306718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.492 kcal (2) G-P(sol) polarization free energy of solvation -38.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds