Wall clock time and date at job start Tue Mar 31 2020 19:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35852 * 117.00065 * 2 1 4 4 N 1.30811 * 126.05590 * 0.19909 * 3 2 1 5 5 N 1.39922 * 108.87766 * 180.24515 * 4 3 2 6 6 C 1.46501 * 125.68574 * 179.73834 * 5 4 3 7 7 C 1.34160 * 108.62423 * 359.72412 * 5 4 3 8 8 C 1.38131 * 107.50906 * 0.02562 * 7 5 4 9 9 C 1.47250 * 126.45113 * 179.97438 * 8 7 5 10 10 O 1.21619 * 120.00196 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99556 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99790 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47243 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47515 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.63772 * 51.85599 * 14 13 12 16 16 C 1.54335 * 110.84636 * 288.69230 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.66998 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46860 * 120.00310 * 22 20 18 25 25 H 1.48500 * 109.47264 * 240.00123 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.08995 * 111.00742 * 81.05954 * 27 26 17 29 29 C 1.52998 * 111.00086 * 204.87731 * 27 26 17 30 30 H 1.09003 * 109.47238 * 60.00059 * 1 2 3 31 31 H 1.09006 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47085 * 299.99754 * 1 2 3 33 33 H 1.09002 * 109.46802 * 269.98998 * 6 5 4 34 34 H 1.08998 * 109.47605 * 29.98825 * 6 5 4 35 35 H 1.09001 * 109.47040 * 149.99908 * 6 5 4 36 36 H 1.08005 * 126.24590 * 180.02562 * 7 5 4 37 37 H 0.97000 * 120.00187 * 0.02562 * 11 9 8 38 38 H 1.09005 * 109.47065 * 60.00370 * 12 11 9 39 39 H 1.08992 * 109.47740 * 300.00587 * 12 11 9 40 40 H 1.09004 * 109.47529 * 60.00110 * 13 12 11 41 41 H 1.09005 * 109.47175 * 300.00548 * 13 12 11 42 42 H 1.09007 * 109.99076 * 100.19801 * 16 14 13 43 43 H 1.09002 * 109.78210 * 339.02796 * 16 14 13 44 44 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 46 46 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 47 47 H 1.08996 * 109.47303 * 58.54471 * 29 27 26 48 48 H 1.09006 * 109.46537 * 178.54319 * 29 27 26 49 49 H 1.08996 * 109.47165 * 298.54472 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4530 2.3766 0.0037 5 7 2.4281 3.3800 -0.0034 6 6 2.1703 4.8222 -0.0076 7 6 3.6385 2.8013 -0.0055 8 6 3.4452 1.4336 -0.0003 9 6 4.4955 0.4016 -0.0008 10 8 4.1912 -0.7759 0.0036 11 7 5.7942 0.7620 -0.0063 12 6 6.8393 -0.2647 -0.0063 13 6 8.2140 0.4068 -0.0124 14 6 9.3054 -0.6655 -0.0130 15 1 9.1355 -1.3862 -0.8128 16 6 9.3776 -1.3765 1.3549 17 7 10.7996 -1.5919 1.6601 18 6 11.2923 -2.1751 2.7969 19 1 10.6152 -2.5140 3.5671 20 6 12.6624 -2.3257 2.9619 21 7 13.4878 -1.9074 2.0260 22 14 13.3345 -3.1206 4.5130 23 1 12.2079 -3.5004 5.4028 24 1 14.1098 -4.3344 4.1510 25 1 14.2202 -2.1594 5.2179 26 6 11.6068 -1.0819 0.5369 27 6 10.7098 -0.0192 -0.1456 28 1 10.7547 0.9306 0.3872 29 6 11.0948 0.1611 -1.6154 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.1028 5.1762 -1.0363 34 1 1.2321 5.0251 0.5087 35 1 2.9843 5.3383 0.5015 36 1 4.5903 3.3117 -0.0103 37 1 6.0370 1.7011 -0.0095 38 1 6.7354 -0.8889 -0.8939 39 1 6.7413 -0.8830 0.8860 40 1 8.3176 1.0307 0.8754 41 1 8.3123 1.0253 -0.9045 42 1 8.8600 -2.3345 1.3047 43 1 8.9249 -0.7479 2.1218 44 1 14.4451 -2.0123 2.1414 45 1 12.5240 -0.6233 0.9065 46 1 11.8385 -1.8871 -0.1601 47 1 11.0007 -0.7922 -2.1353 48 1 10.4327 0.8937 -2.0771 49 1 12.1252 0.5104 -1.6808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103306718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:30 Heat of formation + Delta-G solvation = -1.659915 kcal Electronic energy + Delta-G solvation = -28656.849221 eV Core-core repulsion = 24620.730691 eV Total energy + Delta-G solvation = -4036.118530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52117 -40.30545 -39.56676 -39.33917 -36.35267 -34.96756 -33.84698 -32.67540 -32.49891 -31.22705 -28.83323 -28.47800 -27.50562 -26.93226 -25.58913 -23.90688 -23.18423 -21.93973 -21.44477 -21.25425 -20.57029 -19.05801 -18.84326 -17.96391 -17.36905 -17.12280 -16.86168 -16.43143 -16.32593 -16.00792 -15.93821 -15.76363 -15.53849 -14.91997 -14.78213 -14.52846 -14.18110 -13.96138 -13.64918 -13.55399 -13.46929 -13.38086 -13.32560 -12.86609 -12.80528 -12.76117 -12.69507 -12.35341 -12.16369 -12.12396 -11.93651 -11.91384 -11.75249 -11.38315 -11.21785 -11.09531 -10.82036 -10.71268 -10.26189 -10.03106 -9.48754 -8.85018 -7.75825 -5.20031 0.49936 1.11452 1.27642 1.45571 1.46725 1.57236 2.16265 2.44837 2.47430 2.50141 3.32531 3.39886 3.75633 3.78193 3.81803 3.98237 4.11978 4.20483 4.25025 4.30883 4.31344 4.40718 4.43779 4.51677 4.54106 4.57830 4.63674 4.68954 4.73223 4.80133 4.81752 4.85246 4.89650 5.06313 5.12066 5.17986 5.26737 5.34698 5.44616 5.49282 5.54752 5.59675 5.81281 5.87362 5.88820 6.15227 6.34979 6.48928 6.75440 7.13908 7.41785 7.81900 8.45795 9.25544 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002040 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.940812 B =13722.409758 C =14322.638457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.290 3.710 4 N -0.373 5.373 5 N -0.341 5.341 6 C 0.087 3.913 7 C 0.158 3.842 8 C -0.333 4.333 9 C 0.588 3.412 10 O -0.591 6.591 11 N -0.709 5.709 12 C 0.127 3.873 13 C -0.097 4.097 14 C -0.079 4.079 15 H 0.074 0.926 16 C 0.133 3.867 17 N -0.630 5.630 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.069 4.069 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.287 1.287 26 C 0.158 3.842 27 C -0.099 4.099 28 H 0.075 0.925 29 C -0.127 4.127 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.246 0.754 37 H 0.416 0.584 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.007 0.993 43 H 0.028 0.972 44 H 0.247 0.753 45 H 0.069 0.931 46 H -0.020 1.020 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.911 20.254 -8.641 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.085 3.915 4 N -0.213 5.213 5 N -0.121 5.121 6 C -0.051 4.051 7 C 0.003 3.997 8 C -0.348 4.348 9 C 0.377 3.623 10 O -0.472 6.472 11 N -0.362 5.362 12 C 0.003 3.997 13 C -0.135 4.135 14 C -0.099 4.099 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.356 5.356 18 C -0.367 4.367 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.807 3.193 23 H -0.194 1.194 24 H -0.220 1.220 25 H -0.214 1.214 26 C 0.033 3.967 27 C -0.118 4.118 28 H 0.094 0.906 29 C -0.184 4.184 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.262 0.738 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.025 0.975 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.087 0.913 46 H -0.002 1.002 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.057 19.768 -8.524 32.283 hybrid contribution 1.103 -1.235 0.956 1.912 sum -22.954 18.533 -7.569 30.457 Atomic orbital electron populations 1.23216 0.76037 1.05125 1.02307 1.86461 1.23778 1.21783 1.88405 1.20788 0.91005 0.85448 0.94263 1.77270 1.14592 0.94756 1.34720 1.48196 1.02807 1.07694 1.53387 1.22526 1.06315 0.70547 1.05734 1.23744 0.92909 0.90368 0.92646 1.19761 0.90859 0.94156 1.30068 1.17457 0.82497 0.87223 0.75152 1.90787 1.83155 1.20654 1.52652 1.45562 1.04154 1.10966 1.75516 1.21241 0.86569 0.90789 1.01110 1.21630 0.90185 0.97263 1.04443 1.22061 0.94941 0.97163 0.95709 0.90762 1.21592 0.85295 0.96441 0.95910 1.44883 1.01867 1.70389 1.18450 1.19479 0.91141 1.30934 0.95188 0.90699 1.25623 0.96171 1.02745 1.01561 1.70076 1.01777 1.53286 1.34632 0.84998 0.78053 0.77344 0.78878 1.19440 1.21982 1.21396 1.21806 0.95284 0.92678 0.86902 1.22463 0.94208 0.98035 0.97113 0.90631 1.21599 1.01496 1.01709 0.93636 0.91942 0.86362 0.92097 0.88392 0.88834 0.85016 0.73833 0.74636 0.92389 0.93828 0.90347 0.87914 0.97529 0.95446 0.94360 0.91261 1.00207 0.93603 0.89809 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 113.37 1.21 1.73 16 2 O -0.30 -8.74 9.98 -86.76 -0.87 -9.61 16 3 C 0.29 7.63 7.85 85.70 0.67 8.30 16 4 N -0.37 -7.90 11.90 -169.99 -2.02 -9.93 16 5 N -0.34 -4.05 3.97 -367.78 -1.46 -5.51 16 6 C 0.09 0.08 11.44 127.77 1.46 1.54 16 7 C 0.16 1.69 10.98 84.31 0.93 2.62 16 8 C -0.33 -7.56 6.14 -20.08 -0.12 -7.68 16 9 C 0.59 16.52 7.81 86.61 0.68 17.20 16 10 O -0.59 -23.29 16.43 1.03 0.02 -23.27 16 11 N -0.71 -14.36 5.54 -466.55 -2.59 -16.95 16 12 C 0.13 3.17 5.56 86.38 0.48 3.65 16 13 C -0.10 -2.13 4.73 30.59 0.14 -1.98 16 14 C -0.08 -2.54 2.39 -9.60 -0.02 -2.56 16 15 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 16 C 0.13 5.67 6.24 86.73 0.54 6.21 16 17 N -0.63 -33.74 3.39 -691.95 -2.35 -36.09 16 18 C -0.24 -13.93 10.27 84.04 0.86 -13.07 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 21 N -0.95 -57.64 10.09 21.65 0.22 -57.43 16 22 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 C 0.16 7.89 5.36 86.86 0.47 8.36 16 27 C -0.10 -3.44 3.09 -9.40 -0.03 -3.47 16 28 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 29 C -0.13 -3.49 9.30 71.98 0.67 -2.82 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.25 -0.40 7.46 -2.91 -0.02 -0.43 16 37 H 0.42 4.38 7.39 -92.71 -0.69 3.69 16 38 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 39 H 0.04 1.35 7.68 -2.39 -0.02 1.33 16 40 H 0.08 1.65 7.94 -2.38 -0.02 1.63 16 41 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.03 1.14 7.69 -2.39 -0.02 1.13 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 46 H -0.02 -1.10 8.04 -2.39 -0.02 -1.11 16 47 H 0.04 1.31 8.11 -2.39 -0.02 1.29 16 48 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -91.09 401.47 1.64 -89.46 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.26 Total: 5.82 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 8.40 Total: 14.48 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -8.20 Total: -125.91 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.85 Total: -32.88 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -91.09 1.64 -89.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103306718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.795 kcal (2) G-P(sol) polarization free energy of solvation -91.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds