Wall clock time and date at job start Tue Mar 31 2020 19:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.64123 * 2 1 4 4 C 1.54324 * 110.87083 * 236.75412 * 2 1 3 5 5 N 1.47018 * 107.27130 * 219.36883 * 4 2 1 6 6 C 1.36937 * 125.64960 * 178.98415 * 5 4 2 7 7 H 1.08007 * 119.99870 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.00266 * 359.97438 * 6 5 4 9 9 N 1.31620 * 119.99508 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47119 * 60.00329 * 10 8 6 12 12 H 1.48506 * 109.47107 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47044 * 299.99728 * 10 8 6 14 14 C 1.47426 * 108.70478 * 358.94347 * 5 4 2 15 15 C 1.54906 * 104.83242 * 24.12359 * 14 5 4 16 16 H 1.09003 * 111.03654 * 81.08233 * 15 14 5 17 17 C 1.53001 * 111.00635 * 204.92020 * 15 14 5 18 18 C 1.53002 * 109.47102 * 287.19683 * 17 15 14 19 19 N 1.46502 * 109.47156 * 180.02562 * 18 17 15 20 20 C 1.34769 * 119.99912 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00261 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00040 * 179.97438 * 20 19 18 23 23 O 1.42891 * 109.47236 * 180.02562 * 22 20 19 24 24 C 1.36232 * 117.00022 * 180.02562 * 23 22 20 25 25 C 1.40109 * 126.05064 * 0.02562 * 24 23 22 26 26 N 1.30874 * 108.35898 * 179.97438 * 25 24 23 27 27 N 1.40086 * 108.31856 * 0.02562 * 26 25 24 28 28 C 1.46493 * 126.07416 * 179.97438 * 27 26 25 29 29 C 1.35590 * 126.05188 * 180.02562 * 24 23 22 30 30 H 1.09008 * 109.47071 * 296.85857 * 1 2 3 31 31 H 1.09003 * 109.47739 * 56.85510 * 1 2 3 32 32 H 1.08995 * 109.47272 * 176.86296 * 1 2 3 33 33 H 1.08997 * 109.88264 * 338.78390 * 4 2 1 34 34 H 1.09001 * 109.88567 * 99.95649 * 4 2 1 35 35 H 0.97003 * 120.00022 * 179.97438 * 9 8 6 36 36 H 1.09008 * 110.36620 * 265.28740 * 14 5 4 37 37 H 1.08994 * 110.37311 * 142.96877 * 14 5 4 38 38 H 1.09003 * 109.47286 * 167.19471 * 17 15 14 39 39 H 1.08995 * 109.47371 * 47.19731 * 17 15 14 40 40 H 1.08998 * 109.46937 * 60.00096 * 18 17 15 41 41 H 1.09003 * 109.46894 * 299.99963 * 18 17 15 42 42 H 0.97000 * 119.99924 * 359.97438 * 19 18 17 43 43 H 1.09002 * 109.46381 * 59.99853 * 22 20 19 44 44 H 1.08994 * 109.47128 * 300.00647 * 22 20 19 45 45 H 1.07996 * 125.82291 * 0.02562 * 25 24 23 46 46 H 1.09005 * 109.46963 * 90.02436 * 28 27 26 47 47 H 1.08998 * 109.46969 * 210.01959 * 28 27 26 48 48 H 1.08998 * 109.47482 * 330.02512 * 28 27 26 49 49 H 1.08004 * 126.21163 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0797 -0.7905 -1.2060 5 7 3.2493 -1.5469 -0.7355 6 6 4.0125 -2.3916 -1.4966 7 1 4.8556 -2.9027 -1.0556 8 6 3.7026 -2.5909 -2.8349 9 7 2.6749 -1.9683 -3.3721 10 14 4.7440 -3.7426 -3.8733 11 1 4.7053 -5.1073 -3.2891 12 1 4.2080 -3.7820 -5.2577 13 1 6.1463 -3.2545 -3.8987 14 6 3.4652 -1.2447 0.6912 15 6 2.0790 -0.7934 1.2151 16 1 1.4466 -1.6525 1.4387 17 6 2.2237 0.1112 2.4406 18 6 2.6469 -0.7288 3.6473 19 7 2.7849 0.1372 4.8209 20 6 3.1524 -0.3880 6.0064 21 8 3.3694 -1.5774 6.1016 22 6 3.2949 0.5029 7.2135 23 8 3.6912 -0.2814 8.3403 24 6 3.8650 0.3758 9.5209 25 6 3.6906 1.7496 9.7333 26 7 3.9472 2.0083 10.9904 27 7 4.2950 0.8086 11.6246 28 6 4.6568 0.6521 13.0355 29 6 4.2372 -0.1840 10.6985 30 1 -0.3634 0.4643 0.9169 31 1 -0.3635 0.5619 -0.8604 32 1 -0.3633 -1.0261 -0.0562 33 1 1.3190 -1.4773 -1.5770 34 1 2.3774 -0.1015 -1.9964 35 1 2.4585 -2.1073 -4.3074 36 1 4.1930 -0.4408 0.8028 37 1 3.7993 -2.1363 1.2216 38 1 1.2693 0.5939 2.6506 39 1 2.9797 0.8713 2.2439 40 1 3.6014 -1.2115 3.4373 41 1 1.8908 -1.4889 3.8440 42 1 2.6125 1.0887 4.7445 43 1 2.3403 0.9853 7.4237 44 1 4.0506 1.2634 7.0167 45 1 3.3942 2.4720 8.9872 46 1 3.7594 0.4511 13.6206 47 1 5.3536 -0.1793 13.1418 48 1 5.1266 1.5680 13.3939 49 1 4.4494 -1.2291 10.8693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103371741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:51 Heat of formation + Delta-G solvation = 30.209403 kcal Electronic energy + Delta-G solvation = -27869.220303 eV Core-core repulsion = 23834.483730 eV Total energy + Delta-G solvation = -4034.736572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66052 -39.95314 -38.32393 -37.86190 -35.26705 -33.38880 -33.24780 -31.47890 -30.67163 -30.41941 -28.52200 -26.91528 -26.47860 -25.57477 -23.99410 -22.13908 -21.77544 -21.43825 -20.60805 -19.72549 -19.20421 -18.50939 -17.25190 -16.82066 -16.73543 -16.25964 -15.82275 -15.63946 -15.26588 -14.79721 -14.77417 -14.68123 -14.22331 -13.85191 -13.67229 -13.49469 -13.13133 -13.05524 -13.02465 -12.60677 -12.54672 -12.30209 -11.91353 -11.68792 -11.51496 -11.35656 -11.20133 -11.10861 -11.05997 -10.75728 -10.72220 -10.10146 -10.01345 -9.88556 -9.86946 -9.81259 -9.61999 -9.47031 -9.17823 -8.55248 -8.28627 -6.77199 -5.66299 -2.99282 1.37834 1.89614 2.35038 2.43510 2.50231 3.44063 3.45174 3.48147 3.49357 4.25510 4.29850 4.46264 4.54357 4.65668 4.66740 4.70132 4.75037 4.89546 4.92425 5.08725 5.10148 5.28089 5.30687 5.48790 5.51452 5.62089 5.69579 5.75188 5.79249 5.93038 5.99600 6.09872 6.23072 6.25410 6.31591 6.38130 6.46564 6.53452 6.65884 6.68989 6.81937 7.00000 7.03803 7.16652 7.31600 7.61914 7.69215 7.88550 8.03518 8.31679 9.27703 9.88173 10.54659 11.45255 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.001619 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.227565 B =17288.826320 C =18147.519095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.139 3.861 15 C -0.096 4.096 16 H 0.077 0.923 17 C -0.116 4.116 18 C 0.120 3.880 19 N -0.725 5.725 20 C 0.512 3.488 21 O -0.516 6.516 22 C 0.048 3.952 23 O -0.277 6.277 24 C -0.029 4.029 25 C -0.006 4.006 26 N -0.273 5.273 27 N -0.370 5.370 28 C 0.108 3.892 29 C 0.026 3.974 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.017 0.983 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.400 0.600 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.187 0.813 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 10.315 28.836 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.571 5.571 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.116 4.116 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.003 4.003 19 N -0.379 5.379 20 C 0.296 3.704 21 O -0.391 6.391 22 C -0.031 4.031 23 O -0.189 6.189 24 C -0.083 4.083 25 C -0.192 4.192 26 N -0.097 5.097 27 N -0.159 5.159 28 C -0.033 4.033 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.094 0.906 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.966 9.976 29.633 31.282 hybrid contribution 0.351 -0.495 -1.384 1.511 sum -0.615 9.481 28.250 29.805 Atomic orbital electron populations 1.21675 0.95577 1.01561 1.00240 1.22480 0.94922 0.98932 0.97036 0.91811 1.21199 0.89061 0.93075 0.90772 1.44459 1.32376 1.51658 1.04782 1.19033 1.07404 1.17836 0.91298 0.90554 1.24787 0.98444 1.00387 0.96894 1.69959 1.28770 1.45767 1.12567 0.86209 0.79499 0.80592 0.79531 1.21197 1.21630 1.21236 1.21622 0.93278 0.97097 0.86716 1.22335 0.98928 0.97605 0.92698 0.90496 1.21750 1.01486 0.98507 0.93679 1.21534 1.02509 0.93102 0.83155 1.45907 1.70555 1.12313 1.09129 1.20007 0.77715 0.88777 0.83864 1.90774 1.48020 1.15721 1.84560 1.22356 1.01774 0.93755 0.85202 1.86112 1.85509 1.33159 1.14096 1.18662 1.11084 0.90911 0.87661 1.24062 1.04650 0.95312 0.95187 1.77273 1.20051 1.05314 1.07056 1.48263 1.54015 1.04438 1.09154 1.21869 1.01606 1.04220 0.75643 1.21573 1.06880 0.95643 0.87723 0.93837 0.93014 0.92760 0.93466 0.94282 0.93807 0.96550 0.94455 0.91549 0.91247 0.90781 0.91257 0.76572 0.89384 0.89324 0.79655 0.90580 0.89173 0.89131 0.79911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.17 37.15 0.34 -1.68 16 2 C -0.11 -2.03 3.01 -88.79 -0.27 -2.30 16 3 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 4 C 0.18 4.42 4.97 -3.07 -0.02 4.41 16 5 N -0.61 -15.62 3.39 -170.08 -0.58 -16.19 16 6 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 7 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.14 2.84 6.18 -2.53 -0.02 2.83 16 15 C -0.10 -1.56 2.45 -88.47 -0.22 -1.78 16 16 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 17 C -0.12 -1.37 4.84 -26.73 -0.13 -1.50 16 18 C 0.12 1.44 5.58 -4.04 -0.02 1.42 16 19 N -0.73 -6.91 5.56 -60.29 -0.33 -7.25 16 20 C 0.51 5.99 7.91 -10.99 -0.09 5.90 16 21 O -0.52 -8.72 16.50 -14.35 -0.24 -8.96 16 22 C 0.05 0.40 5.56 36.01 0.20 0.60 16 23 O -0.28 -3.18 9.76 -40.39 -0.39 -3.57 16 24 C -0.03 -0.28 6.96 -39.83 -0.28 -0.56 16 25 C -0.01 -0.05 11.07 -17.26 -0.19 -0.24 16 26 N -0.27 -2.67 12.57 30.68 0.39 -2.28 16 27 N -0.37 -2.93 4.04 -67.85 -0.27 -3.20 16 28 C 0.11 0.36 11.48 59.84 0.69 1.05 16 29 C 0.03 0.22 11.56 -16.71 -0.19 0.02 16 30 H 0.04 0.54 8.09 -51.92 -0.42 0.12 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 1.26 7.02 -51.93 -0.36 0.90 16 34 H 0.04 1.05 7.51 -51.93 -0.39 0.66 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.02 0.34 7.91 -51.92 -0.41 -0.07 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 40 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.40 2.38 8.47 -40.82 -0.35 2.04 16 43 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.19 0.98 7.69 -52.49 -0.40 0.58 16 46 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 48 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -37.64 403.39 -8.41 -46.05 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.17 Total: -2.53 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.44 Total: 1.21 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.23 Total: -55.70 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.63 Total: -12.53 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.64 -8.41 -46.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103371741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.257 kcal (2) G-P(sol) polarization free energy of solvation -37.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds