Wall clock time and date at job start Tue Mar 31 2020 19:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.64123 * 2 1 4 4 C 1.54324 * 110.87083 * 236.75412 * 2 1 3 5 5 N 1.47018 * 107.27130 * 219.36883 * 4 2 1 6 6 C 1.36937 * 125.64960 * 178.98415 * 5 4 2 7 7 H 1.08007 * 119.99870 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.00266 * 359.97438 * 6 5 4 9 9 N 1.31620 * 119.99508 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47119 * 60.00329 * 10 8 6 12 12 H 1.48506 * 109.47107 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47044 * 299.99728 * 10 8 6 14 14 C 1.47426 * 108.70478 * 358.94347 * 5 4 2 15 15 C 1.54906 * 104.83242 * 24.12359 * 14 5 4 16 16 H 1.09003 * 111.03654 * 81.08233 * 15 14 5 17 17 C 1.53001 * 111.00635 * 204.92020 * 15 14 5 18 18 C 1.53002 * 109.47102 * 287.19683 * 17 15 14 19 19 N 1.46502 * 109.47156 * 180.02562 * 18 17 15 20 20 C 1.34769 * 119.99912 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00261 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00040 * 179.97438 * 20 19 18 23 23 O 1.42891 * 109.47236 * 180.02562 * 22 20 19 24 24 C 1.36232 * 117.00022 * 180.02562 * 23 22 20 25 25 C 1.40109 * 126.05064 * 0.02562 * 24 23 22 26 26 N 1.30874 * 108.35898 * 179.97438 * 25 24 23 27 27 N 1.40086 * 108.31856 * 0.02562 * 26 25 24 28 28 C 1.46493 * 126.07416 * 179.97438 * 27 26 25 29 29 C 1.35590 * 126.05188 * 180.02562 * 24 23 22 30 30 H 1.09008 * 109.47071 * 296.85857 * 1 2 3 31 31 H 1.09003 * 109.47739 * 56.85510 * 1 2 3 32 32 H 1.08995 * 109.47272 * 176.86296 * 1 2 3 33 33 H 1.08997 * 109.88264 * 338.78390 * 4 2 1 34 34 H 1.09001 * 109.88567 * 99.95649 * 4 2 1 35 35 H 0.97003 * 120.00022 * 179.97438 * 9 8 6 36 36 H 1.09008 * 110.36620 * 265.28740 * 14 5 4 37 37 H 1.08994 * 110.37311 * 142.96877 * 14 5 4 38 38 H 1.09003 * 109.47286 * 167.19471 * 17 15 14 39 39 H 1.08995 * 109.47371 * 47.19731 * 17 15 14 40 40 H 1.08998 * 109.46937 * 60.00096 * 18 17 15 41 41 H 1.09003 * 109.46894 * 299.99963 * 18 17 15 42 42 H 0.97000 * 119.99924 * 359.97438 * 19 18 17 43 43 H 1.09002 * 109.46381 * 59.99853 * 22 20 19 44 44 H 1.08994 * 109.47128 * 300.00647 * 22 20 19 45 45 H 1.07996 * 125.82291 * 0.02562 * 25 24 23 46 46 H 1.09005 * 109.46963 * 90.02436 * 28 27 26 47 47 H 1.08998 * 109.46969 * 210.01959 * 28 27 26 48 48 H 1.08998 * 109.47482 * 330.02512 * 28 27 26 49 49 H 1.08004 * 126.21163 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0797 -0.7905 -1.2060 5 7 3.2493 -1.5469 -0.7355 6 6 4.0125 -2.3916 -1.4966 7 1 4.8556 -2.9027 -1.0556 8 6 3.7026 -2.5909 -2.8349 9 7 2.6749 -1.9683 -3.3721 10 14 4.7440 -3.7426 -3.8733 11 1 4.7053 -5.1073 -3.2891 12 1 4.2080 -3.7820 -5.2577 13 1 6.1463 -3.2545 -3.8987 14 6 3.4652 -1.2447 0.6912 15 6 2.0790 -0.7934 1.2151 16 1 1.4466 -1.6525 1.4387 17 6 2.2237 0.1112 2.4406 18 6 2.6469 -0.7288 3.6473 19 7 2.7849 0.1372 4.8209 20 6 3.1524 -0.3880 6.0064 21 8 3.3694 -1.5774 6.1016 22 6 3.2949 0.5029 7.2135 23 8 3.6912 -0.2814 8.3403 24 6 3.8650 0.3758 9.5209 25 6 3.6906 1.7496 9.7333 26 7 3.9472 2.0083 10.9904 27 7 4.2950 0.8086 11.6246 28 6 4.6568 0.6521 13.0355 29 6 4.2372 -0.1840 10.6985 30 1 -0.3634 0.4643 0.9169 31 1 -0.3635 0.5619 -0.8604 32 1 -0.3633 -1.0261 -0.0562 33 1 1.3190 -1.4773 -1.5770 34 1 2.3774 -0.1015 -1.9964 35 1 2.4585 -2.1073 -4.3074 36 1 4.1930 -0.4408 0.8028 37 1 3.7993 -2.1363 1.2216 38 1 1.2693 0.5939 2.6506 39 1 2.9797 0.8713 2.2439 40 1 3.6014 -1.2115 3.4373 41 1 1.8908 -1.4889 3.8440 42 1 2.6125 1.0887 4.7445 43 1 2.3403 0.9853 7.4237 44 1 4.0506 1.2634 7.0167 45 1 3.3942 2.4720 8.9872 46 1 3.7594 0.4511 13.6206 47 1 5.3536 -0.1793 13.1418 48 1 5.1266 1.5680 13.3939 49 1 4.4494 -1.2291 10.8693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103371741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:50 Heat of formation + Delta-G solvation = 3.664497 kcal Electronic energy + Delta-G solvation = -27870.371376 eV Core-core repulsion = 23834.483730 eV Total energy + Delta-G solvation = -4035.887646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24065 -40.85070 -39.73610 -38.71990 -36.42985 -34.99419 -33.85469 -32.67334 -32.49205 -31.13546 -29.41800 -28.06181 -27.35597 -27.13148 -25.46955 -23.48962 -22.46528 -22.08848 -21.58298 -21.19295 -20.62107 -19.11919 -18.82994 -18.07310 -17.42113 -17.06927 -16.91950 -16.46397 -16.34340 -16.07033 -15.69318 -15.63210 -15.36454 -15.25031 -14.82205 -14.51850 -14.26866 -14.12893 -13.82180 -13.44462 -13.40800 -13.40619 -13.32961 -13.19195 -12.91365 -12.75172 -12.67357 -12.38869 -12.19994 -12.07539 -11.92267 -11.78536 -11.71509 -11.39238 -11.24550 -11.13104 -10.84557 -10.68244 -10.43636 -10.10781 -8.89848 -8.86612 -7.83948 -5.18977 0.80293 1.38836 1.44057 1.47513 1.53768 1.55669 1.75749 1.84354 2.49759 2.77191 3.33245 3.63775 3.70047 3.79472 3.84310 3.90150 3.98849 4.06963 4.17429 4.24186 4.27903 4.31161 4.39987 4.48056 4.55370 4.59573 4.65493 4.73458 4.75954 4.77146 4.79228 4.86601 5.03894 5.06963 5.16085 5.22067 5.25268 5.31240 5.42482 5.44212 5.48243 5.58164 5.77941 5.86131 5.98317 6.22651 6.37092 6.56669 6.62767 7.12658 7.24265 7.81096 8.45242 9.25687 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.001619 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.227565 B =17288.826320 C =18147.519095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.190 3.810 5 N -0.632 5.632 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.132 3.868 15 C -0.081 4.081 16 H 0.070 0.930 17 C -0.098 4.098 18 C 0.125 3.875 19 N -0.706 5.706 20 C 0.509 3.491 21 O -0.579 6.579 22 C 0.051 3.949 23 O -0.309 6.309 24 C -0.054 4.054 25 C -0.004 4.004 26 N -0.305 5.305 27 N -0.371 5.371 28 C 0.097 3.903 29 C 0.021 3.979 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.009 0.991 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.026 0.974 37 H 0.030 0.970 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.422 0.578 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.214 0.786 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 12.167 31.029 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.065 3.935 5 N -0.358 5.358 6 C -0.375 4.375 7 H 0.095 0.905 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.007 3.993 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.136 4.136 18 C 0.001 3.999 19 N -0.361 5.361 20 C 0.295 3.705 21 O -0.458 6.458 22 C -0.027 4.027 23 O -0.222 6.222 24 C -0.108 4.108 25 C -0.189 4.189 26 N -0.130 5.130 27 N -0.159 5.159 28 C -0.042 4.042 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.260 0.740 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.231 0.769 46 H 0.106 0.894 47 H 0.131 0.869 48 H 0.113 0.887 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.250 11.897 31.873 34.044 hybrid contribution 0.486 -1.097 -2.015 2.345 sum -0.764 10.800 29.858 31.760 Atomic orbital electron populations 1.21635 0.93214 1.01180 1.02407 1.22362 0.96736 0.98697 0.94230 0.89989 1.21007 0.87806 0.91929 0.92799 1.44819 1.32524 1.51453 1.06958 1.19431 1.07794 1.18205 0.92089 0.90463 1.25634 0.99881 1.02271 0.98139 1.70195 1.30251 1.47112 1.12308 0.85176 0.78097 0.78721 0.77493 1.20495 1.21794 1.20333 1.21855 0.96190 0.97122 0.84138 1.22209 0.95653 0.98098 0.94085 0.91194 1.21598 1.03807 0.97428 0.90812 1.21286 1.00918 0.93412 0.84306 1.45663 1.69408 1.13166 1.07829 1.20707 0.76321 0.88390 0.85088 1.90750 1.50900 1.18534 1.85574 1.22508 1.04468 0.92840 0.82923 1.86048 1.86131 1.34828 1.15157 1.18904 1.12668 0.91662 0.87553 1.24488 1.03756 0.95335 0.95370 1.77219 1.21326 1.06573 1.07837 1.48640 1.53224 1.03780 1.10297 1.22219 1.02803 1.05456 0.73727 1.22017 1.05958 0.96596 0.87802 0.89699 0.92997 0.94250 0.97285 0.98312 0.94476 0.95667 0.95146 0.88112 0.89861 0.93281 0.92338 0.73955 0.86024 0.86321 0.76912 0.89396 0.86901 0.88656 0.78236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.17 71.98 0.66 -2.90 16 2 C -0.10 -3.44 3.01 -9.61 -0.03 -3.47 16 3 H 0.08 2.53 8.04 -2.38 -0.02 2.51 16 4 C 0.19 9.44 4.97 86.73 0.43 9.87 16 5 N -0.63 -33.42 3.39 -692.00 -2.35 -35.77 16 6 C -0.25 -14.36 10.28 84.03 0.86 -13.50 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 9 N -0.95 -58.54 10.31 21.65 0.22 -58.32 16 10 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 C 0.13 5.39 6.18 86.85 0.54 5.93 16 15 C -0.08 -2.50 2.45 -9.40 -0.02 -2.52 16 16 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 17 C -0.10 -1.96 4.84 30.60 0.15 -1.81 16 18 C 0.12 2.76 5.58 86.38 0.48 3.25 16 19 N -0.71 -11.41 5.56 -463.05 -2.57 -13.99 16 20 C 0.51 11.06 7.91 87.66 0.69 11.75 16 21 O -0.58 -19.69 16.50 16.01 0.26 -19.42 16 22 C 0.05 0.70 5.56 71.24 0.40 1.10 16 23 O -0.31 -6.73 9.76 -77.16 -0.75 -7.48 16 24 C -0.05 -0.98 6.96 22.11 0.15 -0.83 16 25 C 0.00 -0.06 11.07 85.29 0.94 0.88 16 26 N -0.31 -5.51 12.57 -56.85 -0.71 -6.23 16 27 N -0.37 -5.35 4.04 -368.57 -1.49 -6.84 16 28 C 0.10 0.49 11.48 127.77 1.47 1.96 16 29 C 0.02 0.33 11.56 83.45 0.96 1.30 16 30 H 0.08 1.72 8.09 -2.38 -0.02 1.70 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.01 0.50 7.02 -2.39 -0.02 0.49 16 34 H 0.00 -0.08 7.51 -2.39 -0.02 -0.10 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.03 1.00 7.91 -2.38 -0.02 0.98 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.08 1.52 7.96 -2.39 -0.02 1.50 16 40 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 3.11 8.47 -92.71 -0.79 2.33 16 43 H 0.12 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.12 0.91 8.10 -2.39 -0.02 0.89 16 45 H 0.21 1.57 7.69 -2.91 -0.02 1.55 16 46 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 47 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -88.02 403.39 2.94 -85.08 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.15 Total: 6.20 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 8.15 Total: 7.56 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.90 Total: -121.14 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.49 Total: -26.91 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -88.02 2.94 -85.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103371741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.740 kcal (2) G-P(sol) polarization free energy of solvation -88.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds