Wall clock time and date at job start Tue Mar 31 2020 19:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88846 * 2 1 4 4 C 1.54914 * 111.00145 * 236.12048 * 2 1 3 5 5 N 1.47427 * 104.83009 * 204.87596 * 4 2 1 6 6 C 1.36937 * 125.64606 * 204.09355 * 5 4 2 7 7 H 1.07996 * 119.99824 * 161.25175 * 6 5 4 8 8 C 1.38807 * 120.00250 * 341.52653 * 6 5 4 9 9 N 1.31620 * 120.00450 * 157.60272 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 337.60961 * 8 6 5 11 11 H 1.48500 * 109.47209 * 84.53337 * 10 8 6 12 12 H 1.48506 * 109.47109 * 204.53340 * 10 8 6 13 13 H 1.48497 * 109.47176 * 324.53007 * 10 8 6 14 14 C 1.47015 * 108.70568 * 24.35900 * 5 4 2 15 15 C 1.54337 * 107.26507 * 358.58089 * 14 5 4 16 16 H 1.09005 * 110.51605 * 96.45416 * 15 14 5 17 17 C 1.53001 * 111.00569 * 219.59972 * 15 14 5 18 18 C 1.52996 * 109.47006 * 288.78250 * 17 15 14 19 19 N 1.46497 * 109.46857 * 179.97438 * 18 17 15 20 20 C 1.34780 * 120.00316 * 179.97438 * 19 18 17 21 21 O 1.21705 * 119.99564 * 0.02562 * 20 19 18 22 22 C 1.46654 * 120.00449 * 179.97438 * 20 19 18 23 23 C 1.35150 * 126.37655 * 0.02866 * 22 20 19 24 24 N 1.37009 * 107.87606 * 179.97438 * 23 22 20 25 25 C 1.46505 * 125.65269 * 180.02562 * 24 23 22 26 26 C 1.34616 * 108.69891 * 0.02562 * 24 23 22 27 27 O 1.21735 * 125.72977 * 179.97438 * 26 24 23 28 28 N 1.34755 * 108.54660 * 359.72448 * 26 24 23 29 29 C 1.46505 * 126.18853 * 180.28555 * 28 26 24 30 30 H 1.08995 * 109.47287 * 182.42421 * 1 2 3 31 31 H 1.08999 * 109.47052 * 302.42509 * 1 2 3 32 32 H 1.08997 * 109.46887 * 62.42304 * 1 2 3 33 33 H 1.08999 * 110.36273 * 86.04306 * 4 2 1 34 34 H 1.08995 * 110.36841 * 323.71790 * 4 2 1 35 35 H 0.97000 * 120.00315 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.88666 * 118.12600 * 14 5 4 37 37 H 1.08996 * 109.88479 * 239.29494 * 14 5 4 38 38 H 1.08994 * 109.46666 * 48.78433 * 17 15 14 39 39 H 1.09002 * 109.46878 * 168.78311 * 17 15 14 40 40 H 1.08994 * 109.47558 * 299.99637 * 18 17 15 41 41 H 1.09002 * 109.47253 * 60.00290 * 18 17 15 42 42 H 0.97004 * 120.00289 * 0.02562 * 19 18 17 43 43 H 1.07998 * 126.06166 * 359.97438 * 23 22 20 44 44 H 1.09000 * 109.46827 * 359.97438 * 25 24 23 45 45 H 1.09001 * 109.47018 * 119.97717 * 25 24 23 46 46 H 1.08996 * 109.46815 * 239.97759 * 25 24 23 47 47 H 1.09000 * 109.46775 * 270.17848 * 29 28 26 48 48 H 1.09000 * 109.46801 * 30.17184 * 29 28 26 49 49 H 1.08994 * 109.47779 * 150.17362 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4642 -1.5649 -1.6086 7 1 5.4763 -1.5784 -1.2320 8 6 4.2149 -1.8694 -2.9397 9 7 5.1736 -1.7483 -3.8333 10 14 2.5185 -2.4508 -3.4630 11 1 1.6452 -1.2746 -3.7061 12 1 2.6318 -3.2494 -4.7099 13 1 1.9301 -3.2907 -2.3890 14 6 3.4667 -1.2786 0.6949 15 6 2.0871 -0.8078 1.2018 16 1 1.4482 -1.6634 1.4207 17 6 2.2317 0.0865 2.4348 18 6 2.6628 -0.7621 3.6326 19 7 2.8019 0.0943 4.8130 20 6 3.1750 -0.4396 5.9929 21 8 3.3969 -1.6333 6.0776 22 6 3.3148 0.4178 7.1744 23 6 3.1027 1.7515 7.2266 24 7 3.3413 2.1654 8.5107 25 6 3.2263 3.5417 8.9995 26 6 3.6988 1.0980 9.2488 27 8 3.9809 1.1147 10.4329 28 7 3.6868 0.0067 8.4582 29 6 4.0082 -1.3624 8.8687 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3633 0.5510 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1713 -2.0839 34 1 1.4522 -1.6702 -1.4027 35 1 4.9995 -1.9614 -4.7635 36 1 3.6616 -2.2954 1.0354 37 1 4.2431 -0.6073 1.0619 38 1 2.9836 0.8518 2.2422 39 1 1.2757 0.5629 2.6523 40 1 1.9110 -1.5274 3.8252 41 1 3.6188 -1.2385 3.4152 42 1 2.6247 1.0457 4.7456 43 1 2.7991 2.3797 6.4022 44 1 2.9202 4.1935 8.1812 45 1 2.4826 3.5837 9.7953 46 1 4.1907 3.8718 9.3857 47 1 5.0755 -1.5402 8.7366 48 1 3.7443 -1.4987 9.9175 49 1 3.4441 -2.0669 8.2576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103763074.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:26 Heat of formation + Delta-G solvation = 6.426774 kcal Electronic energy + Delta-G solvation = -28915.095801 eV Core-core repulsion = 24879.327937 eV Total energy + Delta-G solvation = -4035.767865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.82842 -39.78417 -38.53663 -37.14026 -35.97554 -35.30160 -33.41081 -31.93746 -31.11690 -30.70989 -28.69941 -27.19183 -26.46708 -25.91893 -24.53964 -23.37023 -22.00299 -21.13004 -20.75416 -20.39006 -19.53613 -18.35447 -17.18742 -16.97328 -16.88080 -16.22474 -15.80445 -15.62608 -15.36593 -15.12970 -14.97859 -14.63629 -14.46563 -14.10705 -13.92696 -13.48742 -13.24478 -13.20193 -13.09534 -12.98468 -12.86324 -12.55096 -12.44648 -11.99462 -11.90722 -11.60325 -11.47950 -11.36681 -10.98945 -10.93748 -10.88493 -10.54566 -10.35196 -10.23230 -10.16180 -9.93573 -9.78650 -9.43025 -9.35109 -8.67025 -8.20035 -7.02410 -5.93962 -3.23989 0.92982 1.74933 2.46195 2.49389 2.93007 3.22663 3.34136 3.48201 3.50580 4.14718 4.45735 4.49826 4.55254 4.64499 4.69351 4.78329 4.85269 4.89312 4.90746 5.05151 5.06421 5.16331 5.23030 5.37247 5.42447 5.43500 5.48800 5.58640 5.69691 5.75509 5.81612 5.90281 5.92946 6.01394 6.06861 6.07651 6.17103 6.23917 6.26198 6.38811 6.55232 6.66086 6.77969 6.80569 6.81603 7.15979 7.73710 7.79521 7.90141 8.32465 8.85139 9.70117 10.19672 11.22330 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.002051 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.464702 B =13647.286926 C =14037.580221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.079 0.921 4 C 0.116 3.884 5 N -0.610 5.610 6 C -0.241 4.241 7 H 0.091 0.909 8 C 0.020 3.980 9 N -0.910 5.910 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.138 3.862 15 C -0.094 4.094 16 H 0.077 0.923 17 C -0.117 4.117 18 C 0.120 3.880 19 N -0.716 5.716 20 C 0.590 3.410 21 O -0.532 6.532 22 C -0.033 4.033 23 C 0.053 3.947 24 N -0.524 5.524 25 C 0.097 3.903 26 C 0.648 3.352 27 O -0.565 6.565 28 N -0.510 5.510 29 C 0.099 3.901 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.400 0.600 43 H 0.191 0.809 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 11.317 22.859 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.368 4.368 7 H 0.109 0.891 8 C -0.178 4.178 9 N -0.554 5.554 10 Si 0.713 3.287 11 H -0.212 1.212 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.013 3.987 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.003 4.003 19 N -0.367 5.367 20 C 0.375 3.625 21 O -0.409 6.409 22 C -0.142 4.142 23 C -0.078 4.078 24 N -0.241 5.241 25 C -0.044 4.044 26 C 0.350 3.650 27 O -0.442 6.442 28 N -0.229 5.229 29 C -0.042 4.042 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.208 0.792 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.042 10.371 23.621 27.336 hybrid contribution -0.969 0.082 -0.604 1.145 sum -10.011 10.453 23.017 27.189 Atomic orbital electron populations 1.21711 0.95251 1.01623 1.01168 1.22354 0.94608 0.99364 0.95618 0.90285 1.22007 0.87321 0.95664 0.95953 1.44780 1.09881 1.78271 1.00734 1.18647 0.86706 1.41188 0.90236 0.89092 1.25003 0.96895 1.00261 0.95639 1.69843 1.33037 1.50824 1.01648 0.86974 0.85615 0.79147 0.76919 1.21235 1.23100 1.20277 1.21442 0.93690 0.98144 0.85435 1.22180 0.98352 0.97684 0.93155 0.90455 1.21781 1.01806 0.98507 0.93405 1.21559 1.02782 0.93175 0.82783 1.45722 1.69735 1.12351 1.08938 1.16698 0.77479 0.86653 0.81645 1.90847 1.50360 1.14992 1.84733 1.19719 1.13736 0.92704 0.88046 1.22076 1.03787 0.93321 0.88568 1.44970 1.60339 1.09541 1.09224 1.21862 1.03806 0.77613 1.01149 1.16129 0.83204 0.80355 0.85311 1.91049 1.58196 1.83592 1.11407 1.45214 1.61162 1.09113 1.07435 1.21909 1.02364 0.78126 1.01771 0.92777 0.92926 0.92750 0.92503 0.95747 0.92750 0.95213 0.94903 0.90781 0.91282 0.91024 0.90423 0.76576 0.79169 0.88902 0.90395 0.90354 0.91215 0.90005 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.30 37.16 0.35 -1.35 16 2 C -0.10 -1.50 3.09 -88.47 -0.27 -1.78 16 3 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 4 C 0.12 2.42 4.16 -2.52 -0.01 2.41 16 5 N -0.61 -14.45 3.21 -170.07 -0.55 -14.99 16 6 C -0.24 -6.80 10.57 -15.06 -0.16 -6.96 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 8 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 9 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16 10 Si 0.88 22.57 24.27 -169.99 -4.13 18.44 16 11 H -0.29 -6.96 6.49 56.52 0.37 -6.59 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.28 -7.00 6.66 56.52 0.38 -6.62 16 14 C 0.14 2.56 6.25 -3.06 -0.02 2.55 16 15 C -0.09 -1.30 2.38 -88.78 -0.21 -1.51 16 16 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 17 C -0.12 -1.11 4.74 -26.73 -0.13 -1.23 16 18 C 0.12 1.17 5.56 -4.05 -0.02 1.15 16 19 N -0.72 -5.60 5.54 -61.63 -0.34 -5.94 16 20 C 0.59 6.11 7.79 -12.86 -0.10 6.01 16 21 O -0.53 -7.46 14.83 5.18 0.08 -7.39 16 22 C -0.03 -0.30 6.88 -81.91 -0.56 -0.86 16 23 C 0.05 0.31 10.86 -16.34 -0.18 0.13 16 24 N -0.52 -4.06 3.12 -128.78 -0.40 -4.46 16 25 C 0.10 0.39 11.03 59.85 0.66 1.05 16 26 C 0.65 7.62 8.49 -87.08 -0.74 6.88 16 27 O -0.57 -8.51 17.66 5.16 0.09 -8.42 16 28 N -0.51 -5.59 3.21 -124.82 -0.40 -5.99 16 29 C 0.10 0.97 10.57 59.85 0.63 1.61 16 30 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.29 6.64 -51.93 -0.34 0.95 16 34 H 0.03 0.54 5.47 -51.93 -0.28 0.26 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.60 7.70 -51.93 -0.40 0.20 16 38 H 0.07 0.70 7.95 -51.93 -0.41 0.29 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 42 H 0.40 1.73 7.32 -40.82 -0.30 1.44 16 43 H 0.19 0.23 7.37 -52.49 -0.39 -0.16 16 44 H 0.09 0.07 8.07 -51.93 -0.42 -0.35 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 49 H 0.10 1.02 6.45 -51.93 -0.34 0.68 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -38.12 391.58 -7.79 -45.91 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -7.96 Total: -4.37 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.86 Total: 8.60 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.91 Total: -58.67 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.17 Total: -15.81 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.13 Total: 18.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.12 -7.79 -45.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103763074.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.333 kcal (2) G-P(sol) polarization free energy of solvation -38.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds