Wall clock time and date at job start Tue Mar 31 2020 19:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88846 * 2 1 4 4 C 1.54914 * 111.00145 * 236.12048 * 2 1 3 5 5 N 1.47427 * 104.83009 * 204.87596 * 4 2 1 6 6 C 1.36937 * 125.64606 * 204.09355 * 5 4 2 7 7 H 1.07996 * 119.99824 * 161.25175 * 6 5 4 8 8 C 1.38807 * 120.00250 * 341.52653 * 6 5 4 9 9 N 1.31620 * 120.00450 * 157.60272 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 337.60961 * 8 6 5 11 11 H 1.48500 * 109.47209 * 84.53337 * 10 8 6 12 12 H 1.48506 * 109.47109 * 204.53340 * 10 8 6 13 13 H 1.48497 * 109.47176 * 324.53007 * 10 8 6 14 14 C 1.47015 * 108.70568 * 24.35900 * 5 4 2 15 15 C 1.54337 * 107.26507 * 358.58089 * 14 5 4 16 16 H 1.09005 * 110.51605 * 96.45416 * 15 14 5 17 17 C 1.53001 * 111.00569 * 219.59972 * 15 14 5 18 18 C 1.52996 * 109.47006 * 288.78250 * 17 15 14 19 19 N 1.46497 * 109.46857 * 179.97438 * 18 17 15 20 20 C 1.34780 * 120.00316 * 179.97438 * 19 18 17 21 21 O 1.21705 * 119.99564 * 0.02562 * 20 19 18 22 22 C 1.46654 * 120.00449 * 179.97438 * 20 19 18 23 23 C 1.35150 * 126.37655 * 0.02866 * 22 20 19 24 24 N 1.37009 * 107.87606 * 179.97438 * 23 22 20 25 25 C 1.46505 * 125.65269 * 180.02562 * 24 23 22 26 26 C 1.34616 * 108.69891 * 0.02562 * 24 23 22 27 27 O 1.21735 * 125.72977 * 179.97438 * 26 24 23 28 28 N 1.34755 * 108.54660 * 359.72448 * 26 24 23 29 29 C 1.46505 * 126.18853 * 180.28555 * 28 26 24 30 30 H 1.08995 * 109.47287 * 182.42421 * 1 2 3 31 31 H 1.08999 * 109.47052 * 302.42509 * 1 2 3 32 32 H 1.08997 * 109.46887 * 62.42304 * 1 2 3 33 33 H 1.08999 * 110.36273 * 86.04306 * 4 2 1 34 34 H 1.08995 * 110.36841 * 323.71790 * 4 2 1 35 35 H 0.97000 * 120.00315 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.88666 * 118.12600 * 14 5 4 37 37 H 1.08996 * 109.88479 * 239.29494 * 14 5 4 38 38 H 1.08994 * 109.46666 * 48.78433 * 17 15 14 39 39 H 1.09002 * 109.46878 * 168.78311 * 17 15 14 40 40 H 1.08994 * 109.47558 * 299.99637 * 18 17 15 41 41 H 1.09002 * 109.47253 * 60.00290 * 18 17 15 42 42 H 0.97004 * 120.00289 * 0.02562 * 19 18 17 43 43 H 1.07998 * 126.06166 * 359.97438 * 23 22 20 44 44 H 1.09000 * 109.46827 * 359.97438 * 25 24 23 45 45 H 1.09001 * 109.47018 * 119.97717 * 25 24 23 46 46 H 1.08996 * 109.46815 * 239.97759 * 25 24 23 47 47 H 1.09000 * 109.46775 * 270.17848 * 29 28 26 48 48 H 1.09000 * 109.46801 * 30.17184 * 29 28 26 49 49 H 1.08994 * 109.47779 * 150.17362 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4642 -1.5649 -1.6086 7 1 5.4763 -1.5784 -1.2320 8 6 4.2149 -1.8694 -2.9397 9 7 5.1736 -1.7483 -3.8333 10 14 2.5185 -2.4508 -3.4630 11 1 1.6452 -1.2746 -3.7061 12 1 2.6318 -3.2494 -4.7099 13 1 1.9301 -3.2907 -2.3890 14 6 3.4667 -1.2786 0.6949 15 6 2.0871 -0.8078 1.2018 16 1 1.4482 -1.6634 1.4207 17 6 2.2317 0.0865 2.4348 18 6 2.6628 -0.7621 3.6326 19 7 2.8019 0.0943 4.8130 20 6 3.1750 -0.4396 5.9929 21 8 3.3969 -1.6333 6.0776 22 6 3.3148 0.4178 7.1744 23 6 3.1027 1.7515 7.2266 24 7 3.3413 2.1654 8.5107 25 6 3.2263 3.5417 8.9995 26 6 3.6988 1.0980 9.2488 27 8 3.9809 1.1147 10.4329 28 7 3.6868 0.0067 8.4582 29 6 4.0082 -1.3624 8.8687 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3633 0.5510 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1713 -2.0839 34 1 1.4522 -1.6702 -1.4027 35 1 4.9995 -1.9614 -4.7635 36 1 3.6616 -2.2954 1.0354 37 1 4.2431 -0.6073 1.0619 38 1 2.9836 0.8518 2.2422 39 1 1.2757 0.5629 2.6523 40 1 1.9110 -1.5274 3.8252 41 1 3.6188 -1.2385 3.4152 42 1 2.6247 1.0457 4.7456 43 1 2.7991 2.3797 6.4022 44 1 2.9202 4.1935 8.1812 45 1 2.4826 3.5837 9.7953 46 1 4.1907 3.8718 9.3857 47 1 5.0755 -1.5402 8.7366 48 1 3.7443 -1.4987 9.9175 49 1 3.4441 -2.0669 8.2576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103763074.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:25 Heat of formation + Delta-G solvation = -22.075639 kcal Electronic energy + Delta-G solvation = -28916.331759 eV Core-core repulsion = 24879.327937 eV Total energy + Delta-G solvation = -4037.003822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.52517 -40.61212 -39.85862 -38.02228 -36.75882 -36.15635 -35.04686 -33.19071 -32.69319 -31.43802 -29.53251 -28.39052 -27.43604 -27.06811 -25.70395 -24.23446 -23.25096 -21.97883 -21.73502 -21.52319 -20.71004 -19.04967 -18.89964 -17.90384 -17.67733 -17.13430 -16.97755 -16.78089 -16.33312 -16.26347 -15.94325 -15.45079 -15.25482 -15.15366 -14.98723 -14.67943 -14.60600 -14.42944 -14.27419 -13.96724 -13.67616 -13.44835 -13.34251 -13.20491 -12.93178 -12.87258 -12.70737 -12.59440 -12.43129 -12.24870 -12.05920 -11.83471 -11.70209 -11.39581 -11.29779 -11.20987 -11.01449 -10.94627 -10.76897 -10.11312 -9.01996 -8.90263 -8.18371 -5.43761 0.33045 1.10224 1.28398 1.37659 1.46487 1.64313 1.84616 2.20996 2.40633 2.60087 3.05017 3.38693 3.58519 3.67250 3.89272 3.93688 3.97801 3.99896 4.19933 4.28539 4.31871 4.37730 4.38960 4.44656 4.50111 4.63698 4.65831 4.68099 4.76309 4.81783 4.82349 4.86827 4.96260 4.98785 5.09283 5.13286 5.18733 5.23916 5.29312 5.39144 5.42480 5.49504 5.61969 5.63859 5.71464 6.10672 6.11880 6.56221 6.79535 7.03361 7.20889 7.56125 8.13438 9.01860 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.002051 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.464702 B =13647.286926 C =14037.580221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.090 0.910 4 C 0.104 3.896 5 N -0.631 5.631 6 C -0.234 4.234 7 H 0.056 0.944 8 C -0.040 4.040 9 N -0.958 5.958 10 Si 0.948 3.052 11 H -0.266 1.266 12 H -0.309 1.309 13 H -0.273 1.273 14 C 0.130 3.870 15 C -0.081 4.081 16 H 0.084 0.916 17 C -0.101 4.101 18 C 0.125 3.875 19 N -0.696 5.696 20 C 0.591 3.409 21 O -0.580 6.580 22 C -0.075 4.075 23 C 0.100 3.900 24 N -0.517 5.517 25 C 0.087 3.913 26 C 0.628 3.372 27 O -0.611 6.611 28 N -0.519 5.519 29 C 0.101 3.899 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.016 0.984 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.421 0.579 43 H 0.250 0.750 44 H 0.139 0.861 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 14.414 23.673 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.021 4.021 5 N -0.358 5.358 6 C -0.363 4.363 7 H 0.074 0.926 8 C -0.235 4.235 9 N -0.605 5.605 10 Si 0.777 3.223 11 H -0.192 1.192 12 H -0.238 1.238 13 H -0.199 1.199 14 C 0.006 3.994 15 C -0.100 4.100 16 H 0.102 0.898 17 C -0.139 4.139 18 C 0.001 3.999 19 N -0.348 5.348 20 C 0.378 3.622 21 O -0.461 6.461 22 C -0.183 4.183 23 C -0.030 4.030 24 N -0.232 5.232 25 C -0.052 4.052 26 C 0.330 3.670 27 O -0.493 6.493 28 N -0.239 5.239 29 C -0.041 4.041 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.260 0.740 43 H 0.266 0.734 44 H 0.157 0.843 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.516 13.546 24.435 30.614 hybrid contribution 0.189 -0.811 -0.799 1.154 sum -12.326 12.735 23.636 29.543 Atomic orbital electron populations 1.21713 0.92300 1.02227 1.03071 1.22317 0.96819 0.98814 0.92588 0.89132 1.22181 0.85949 0.95837 0.98098 1.44956 1.09963 1.78250 1.02591 1.18610 0.86995 1.39716 0.90957 0.92599 1.25654 1.00710 1.01265 0.95827 1.69971 1.35434 1.53144 1.01954 0.85924 0.81434 0.78969 0.76020 1.19176 1.23785 1.19862 1.21688 0.97363 0.97770 0.82628 1.22121 0.94733 0.98636 0.94519 0.89760 1.21661 1.04221 0.97416 0.90594 1.21358 1.01282 0.93561 0.83693 1.45420 1.68720 1.13221 1.07455 1.16868 0.76762 0.86142 0.82412 1.90828 1.52693 1.17124 1.85487 1.19710 1.17449 0.94020 0.87081 1.22981 0.99034 0.92385 0.88648 1.45235 1.58531 1.09919 1.09481 1.22241 1.03848 0.76036 1.03102 1.16437 0.83899 0.81461 0.85182 1.90995 1.60385 1.84494 1.13420 1.45307 1.61074 1.09084 1.08429 1.21841 1.02167 0.78324 1.01718 0.93060 0.89031 0.92719 0.94808 0.96480 0.92926 0.96550 0.94699 0.89987 0.87261 0.91437 0.93227 0.74046 0.73370 0.84298 0.90499 0.90751 0.91371 0.89896 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.30 71.98 0.67 -1.91 16 2 C -0.09 -2.25 3.09 -9.40 -0.03 -2.28 16 3 H 0.09 2.20 8.05 -2.38 -0.02 2.18 16 4 C 0.10 4.19 4.16 86.86 0.36 4.55 16 5 N -0.63 -29.95 3.21 -691.99 -2.22 -32.17 16 6 C -0.23 -13.67 10.57 84.03 0.89 -12.78 16 7 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 8 C -0.04 -2.42 5.43 84.86 0.46 -1.96 16 9 N -0.96 -61.31 13.97 21.65 0.30 -61.00 16 10 Si 0.95 47.55 24.27 68.60 1.66 49.21 16 11 H -0.27 -12.37 6.49 99.48 0.65 -11.72 16 12 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 13 H -0.27 -13.33 6.66 99.48 0.66 -12.67 16 14 C 0.13 4.73 6.25 86.73 0.54 5.27 16 15 C -0.08 -1.94 2.38 -9.60 -0.02 -1.97 16 16 H 0.08 1.97 8.02 -2.38 -0.02 1.95 16 17 C -0.10 -1.41 4.74 30.59 0.14 -1.26 16 18 C 0.12 2.07 5.56 86.38 0.48 2.55 16 19 N -0.70 -8.26 5.54 -467.11 -2.59 -10.84 16 20 C 0.59 11.18 7.79 86.44 0.67 11.85 16 21 O -0.58 -16.37 14.83 -4.37 -0.06 -16.43 16 22 C -0.08 -1.21 6.88 39.35 0.27 -0.94 16 23 C 0.10 0.72 10.86 83.17 0.90 1.62 16 24 N -0.52 -6.42 3.12 -679.65 -2.12 -8.54 16 25 C 0.09 0.39 11.03 127.77 1.41 1.80 16 26 C 0.63 14.41 8.49 179.11 1.52 15.93 16 27 O -0.61 -18.88 17.66 -4.46 -0.08 -18.96 16 28 N -0.52 -11.26 3.21 -667.05 -2.14 -13.41 16 29 C 0.10 2.10 10.57 127.77 1.35 3.45 16 30 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 1.50 6.64 -2.39 -0.02 1.48 16 34 H 0.02 0.73 5.47 -2.39 -0.01 0.72 16 35 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.03 1.25 7.70 -2.39 -0.02 1.23 16 38 H 0.08 1.10 7.95 -2.39 -0.02 1.08 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.13 7.69 -2.39 -0.02 1.11 16 42 H 0.42 1.14 7.32 -92.71 -0.68 0.46 16 43 H 0.25 -1.38 7.37 -2.91 -0.02 -1.40 16 44 H 0.14 -0.65 8.07 -2.39 -0.02 -0.66 16 45 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 49 H 0.09 2.06 6.45 -2.39 -0.02 2.05 16 Total: -1.00 -91.76 391.58 2.55 -89.22 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 0.17 Total: -1.02 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 9.62 Total: 23.94 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -8.77 Total: -125.96 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.14 Total: -35.39 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.66 Total: 49.21 kcal Total: -91.76 2.55 -89.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103763074.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.140 kcal (2) G-P(sol) polarization free energy of solvation -91.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds