Wall clock time and date at job start Tue Mar 31 2020 19:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.91559 * 2 1 4 4 C 1.55123 * 111.16376 * 236.07399 * 2 1 3 5 5 N 1.47425 * 104.94503 * 205.13253 * 4 2 1 6 6 C 1.34778 * 125.64957 * 203.97161 * 5 4 2 7 7 O 1.21276 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.50704 * 119.99718 * 0.03037 * 6 5 4 9 9 O 1.42900 * 109.46787 * 180.02562 * 8 6 5 10 10 C 1.36234 * 116.99790 * 180.02562 * 9 8 6 11 11 C 1.40114 * 126.05228 * 0.02763 * 10 9 8 12 12 N 1.30868 * 108.35570 * 179.97438 * 11 10 9 13 13 N 1.40076 * 108.32450 * 0.02562 * 12 11 10 14 14 C 1.46502 * 126.07949 * 180.02562 * 13 12 11 15 15 C 1.35585 * 126.05156 * 179.71590 * 10 9 8 16 16 C 1.47021 * 108.70495 * 23.99996 * 5 4 2 17 17 C 1.54327 * 107.27071 * 358.94080 * 16 5 4 18 18 H 1.09006 * 110.71816 * 96.34362 * 17 16 5 19 19 C 1.52992 * 110.72288 * 219.44088 * 17 16 5 20 20 C 1.52997 * 109.47482 * 291.16032 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47299 * 119.99957 * 26 24 22 29 29 H 1.48495 * 109.47075 * 240.00117 * 26 24 22 30 30 H 1.09004 * 109.47324 * 296.09884 * 1 2 3 31 31 H 1.08994 * 109.47206 * 56.09654 * 1 2 3 32 32 H 1.09001 * 109.47465 * 176.09669 * 1 2 3 33 33 H 1.08999 * 110.42250 * 86.20254 * 4 2 1 34 34 H 1.08998 * 110.29634 * 323.99741 * 4 2 1 35 35 H 1.08999 * 109.47464 * 300.00685 * 8 6 5 36 36 H 1.09004 * 109.46579 * 60.00907 * 8 6 5 37 37 H 1.08000 * 125.82263 * 0.02562 * 11 10 9 38 38 H 1.09006 * 109.46452 * 89.97257 * 14 13 12 39 39 H 1.08995 * 109.47259 * 209.97127 * 14 13 12 40 40 H 1.08998 * 109.47161 * 329.97707 * 14 13 12 41 41 H 1.08002 * 126.20686 * 0.02562 * 15 10 9 42 42 H 1.09001 * 109.88567 * 239.53074 * 16 5 4 43 43 H 1.08997 * 109.88696 * 118.35765 * 16 5 4 44 44 H 1.09002 * 109.47103 * 171.15785 * 19 17 16 45 45 H 1.08998 * 109.46862 * 51.16597 * 19 17 16 46 46 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 47 47 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 48 48 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 49 49 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7706 6 6 4.4511 -1.5689 -1.5892 7 8 5.5143 -1.9200 -1.1231 8 6 4.2719 -1.4918 -3.0835 9 8 5.4865 -1.8789 -3.7294 10 6 5.4945 -1.8639 -5.0916 11 6 4.4224 -1.5035 -5.9186 12 7 4.8081 -1.6126 -7.1644 13 7 6.1398 -2.0469 -7.1767 14 6 6.9550 -2.2963 -8.3682 15 6 6.5432 -2.1893 -5.8870 16 6 3.4672 -1.2781 0.6988 17 6 2.0862 -0.8079 1.2022 18 1 1.4450 -1.6614 1.4229 19 6 2.2350 0.0875 2.4338 20 6 2.7238 -0.7500 3.6173 21 7 2.8668 0.1077 4.7964 22 6 3.2941 -0.4256 5.9831 23 1 3.5260 -1.4784 6.0497 24 6 3.4291 0.3868 7.1004 25 7 3.1461 1.6696 7.0195 26 14 4.0127 -0.3405 8.7191 27 1 4.2631 -1.7941 8.5469 28 1 5.2685 0.3312 9.1395 29 1 2.9708 -0.1368 9.7574 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1642 -0.1732 -2.0838 34 1 1.4552 -1.6694 -1.4053 35 1 3.4688 -2.1628 -3.3883 36 1 4.0190 -0.4701 -3.3669 37 1 3.4447 -1.1886 -5.5849 38 1 7.4755 -1.3810 -8.6502 39 1 7.6841 -3.0773 -8.1526 40 1 6.3118 -2.6159 -9.1881 41 1 7.5208 -2.5069 -5.5556 42 1 4.2434 -0.6056 1.0641 43 1 3.6613 -2.2937 1.0436 44 1 1.2706 0.5331 2.6777 45 1 2.9571 0.8766 2.2241 46 1 3.6882 -1.1956 3.3734 47 1 2.0015 -1.5390 3.8268 48 1 2.6582 1.0530 4.7366 49 1 3.2400 2.2374 7.8003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104588396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:17 Heat of formation + Delta-G solvation = 22.782630 kcal Electronic energy + Delta-G solvation = -28126.770961 eV Core-core repulsion = 24091.712339 eV Total energy + Delta-G solvation = -4035.058622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66037 -40.38711 -38.69660 -37.54728 -35.15425 -33.39395 -33.37357 -32.07776 -30.80128 -30.16388 -28.70423 -26.95675 -26.64519 -26.43710 -24.09567 -22.50912 -21.74275 -21.40954 -20.75174 -20.11654 -19.44974 -18.52574 -17.16485 -17.04137 -16.79465 -16.41410 -15.90006 -15.72817 -15.25162 -14.77956 -14.69744 -14.59163 -14.42447 -13.99706 -13.82406 -13.38095 -13.29012 -13.14722 -13.10982 -12.89812 -12.78357 -12.74837 -12.57962 -12.19974 -11.80735 -11.51013 -11.44796 -11.17398 -11.09872 -11.03579 -10.84186 -10.62283 -10.45261 -10.27711 -9.95394 -9.92877 -9.87986 -9.64614 -8.84515 -8.80143 -8.28216 -6.88797 -5.73755 -3.02181 1.38269 1.88647 2.35178 2.40606 2.42593 3.31602 3.45918 3.51679 3.53901 4.08201 4.26815 4.27834 4.34703 4.50665 4.63283 4.64905 4.66313 4.67903 4.70790 4.76604 4.92830 5.07007 5.09098 5.15317 5.20601 5.30374 5.31072 5.46494 5.52245 5.60182 5.70243 5.76457 5.78454 5.86360 5.98521 5.99278 6.03670 6.13764 6.28510 6.38263 6.39537 6.47151 6.85915 6.90030 7.01631 7.17401 7.30163 7.73899 7.97292 8.45428 9.56546 10.14846 10.49197 11.49328 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.001759 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.052200 B =15918.355582 C =16949.276594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.098 3.902 5 N -0.616 5.616 6 C 0.529 3.471 7 O -0.515 6.515 8 C 0.055 3.945 9 O -0.278 6.278 10 C -0.028 4.028 11 C -0.006 4.006 12 N -0.273 5.273 13 N -0.370 5.370 14 C 0.108 3.892 15 C 0.026 3.974 16 C 0.113 3.887 17 C -0.089 4.089 18 H 0.087 0.913 19 C -0.115 4.115 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.184 0.816 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -6.199 -32.591 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.352 5.352 6 C 0.315 3.685 7 O -0.389 6.389 8 C -0.024 4.024 9 O -0.189 6.189 10 C -0.083 4.083 11 C -0.192 4.192 12 N -0.097 5.097 13 N -0.159 5.159 14 C -0.033 4.033 15 C -0.118 4.118 16 C -0.008 4.008 17 C -0.109 4.109 18 H 0.106 0.894 19 C -0.153 4.153 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.201 0.799 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.521 -6.517 -33.441 34.074 hybrid contribution 0.238 -0.002 1.733 1.749 sum -0.283 -6.519 -31.708 32.372 Atomic orbital electron populations 1.21696 0.93449 1.02153 1.02515 1.22462 0.96379 0.99597 0.93578 0.89327 1.22563 0.83292 0.98461 0.98158 1.48383 1.12168 1.67126 1.07564 1.19613 0.83323 0.78195 0.87335 1.90777 1.25601 1.45626 1.76941 1.22304 0.87477 1.01723 0.90931 1.86107 1.33979 1.85096 1.13748 1.18660 0.94960 1.10870 0.83792 1.24050 1.00284 1.04491 0.90383 1.77264 0.92588 1.19501 1.20305 1.48263 1.09470 1.52900 1.05223 1.21871 0.94110 1.02528 0.84820 1.21570 0.99921 1.07057 0.83241 1.22160 0.98502 1.02364 0.77791 1.22298 0.94926 0.98869 0.94765 0.89443 1.21734 1.02052 0.98069 0.93461 1.20690 0.97160 0.93234 0.86602 1.42366 1.80859 1.08388 1.06193 1.19295 1.36329 0.93727 0.87551 0.91128 1.24737 1.02559 0.95646 0.98160 1.69668 1.55407 1.03859 1.29392 0.86117 0.77979 0.78100 0.84027 1.20543 1.21875 1.21889 0.91466 0.92468 0.92339 0.90711 0.90882 0.89454 0.89436 0.79713 0.90573 0.89175 0.89126 0.79897 0.90501 0.91020 0.91247 0.91641 0.96284 0.96426 0.78344 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.31 37.15 0.35 -0.68 16 2 C -0.10 -0.88 3.10 -88.36 -0.27 -1.15 16 3 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 4 C 0.10 0.74 6.17 -2.41 -0.01 0.73 16 5 N -0.62 -6.98 3.33 -170.38 -0.57 -7.55 16 6 C 0.53 6.90 7.93 -10.98 -0.09 6.82 16 7 O -0.52 -9.27 16.83 -14.35 -0.24 -9.51 16 8 C 0.05 0.51 4.57 36.01 0.16 0.67 16 9 O -0.28 -3.35 9.76 -40.40 -0.39 -3.75 16 10 C -0.03 -0.29 6.96 -39.83 -0.28 -0.57 16 11 C -0.01 -0.05 11.07 -17.26 -0.19 -0.24 16 12 N -0.27 -2.70 12.57 30.68 0.39 -2.31 16 13 N -0.37 -2.98 4.04 -67.84 -0.27 -3.26 16 14 C 0.11 0.37 11.48 59.85 0.69 1.06 16 15 C 0.03 0.23 11.56 -16.71 -0.19 0.03 16 16 C 0.11 1.48 5.73 -3.06 -0.02 1.46 16 17 C -0.09 -1.02 2.42 -88.79 -0.21 -1.24 16 18 H 0.09 0.96 8.04 -51.93 -0.42 0.55 16 19 C -0.12 -1.72 4.72 -26.74 -0.13 -1.85 16 20 C 0.15 2.99 6.13 -4.04 -0.02 2.97 16 21 N -0.73 -18.85 5.60 -59.91 -0.34 -19.18 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 26 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 7.48 -51.93 -0.39 0.01 16 34 H 0.07 0.46 7.99 -51.93 -0.41 0.04 16 35 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.09 0.60 7.80 -51.93 -0.41 0.19 16 37 H 0.19 1.04 7.69 -52.49 -0.40 0.63 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -37.97 406.23 -8.23 -46.20 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.16 Total: 2.83 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.47 Total: 0.52 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.07 Total: -60.19 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.64 Total: -13.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.97 -8.23 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104588396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds