Wall clock time and date at job start Tue Mar 31 2020 19:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.91559 * 2 1 4 4 C 1.55123 * 111.16376 * 236.07399 * 2 1 3 5 5 N 1.47425 * 104.94503 * 205.13253 * 4 2 1 6 6 C 1.34778 * 125.64957 * 203.97161 * 5 4 2 7 7 O 1.21276 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.50704 * 119.99718 * 0.03037 * 6 5 4 9 9 O 1.42900 * 109.46787 * 180.02562 * 8 6 5 10 10 C 1.36234 * 116.99790 * 180.02562 * 9 8 6 11 11 C 1.40114 * 126.05228 * 0.02763 * 10 9 8 12 12 N 1.30868 * 108.35570 * 179.97438 * 11 10 9 13 13 N 1.40076 * 108.32450 * 0.02562 * 12 11 10 14 14 C 1.46502 * 126.07949 * 180.02562 * 13 12 11 15 15 C 1.35585 * 126.05156 * 179.71590 * 10 9 8 16 16 C 1.47021 * 108.70495 * 23.99996 * 5 4 2 17 17 C 1.54327 * 107.27071 * 358.94080 * 16 5 4 18 18 H 1.09006 * 110.71816 * 96.34362 * 17 16 5 19 19 C 1.52992 * 110.72288 * 219.44088 * 17 16 5 20 20 C 1.52997 * 109.47482 * 291.16032 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47299 * 119.99957 * 26 24 22 29 29 H 1.48495 * 109.47075 * 240.00117 * 26 24 22 30 30 H 1.09004 * 109.47324 * 296.09884 * 1 2 3 31 31 H 1.08994 * 109.47206 * 56.09654 * 1 2 3 32 32 H 1.09001 * 109.47465 * 176.09669 * 1 2 3 33 33 H 1.08999 * 110.42250 * 86.20254 * 4 2 1 34 34 H 1.08998 * 110.29634 * 323.99741 * 4 2 1 35 35 H 1.08999 * 109.47464 * 300.00685 * 8 6 5 36 36 H 1.09004 * 109.46579 * 60.00907 * 8 6 5 37 37 H 1.08000 * 125.82263 * 0.02562 * 11 10 9 38 38 H 1.09006 * 109.46452 * 89.97257 * 14 13 12 39 39 H 1.08995 * 109.47259 * 209.97127 * 14 13 12 40 40 H 1.08998 * 109.47161 * 329.97707 * 14 13 12 41 41 H 1.08002 * 126.20686 * 0.02562 * 15 10 9 42 42 H 1.09001 * 109.88567 * 239.53074 * 16 5 4 43 43 H 1.08997 * 109.88696 * 118.35765 * 16 5 4 44 44 H 1.09002 * 109.47103 * 171.15785 * 19 17 16 45 45 H 1.08998 * 109.46862 * 51.16597 * 19 17 16 46 46 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 47 47 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 48 48 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 49 49 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7706 6 6 4.4511 -1.5689 -1.5892 7 8 5.5143 -1.9200 -1.1231 8 6 4.2719 -1.4918 -3.0835 9 8 5.4865 -1.8789 -3.7294 10 6 5.4945 -1.8639 -5.0916 11 6 4.4224 -1.5035 -5.9186 12 7 4.8081 -1.6126 -7.1644 13 7 6.1398 -2.0469 -7.1767 14 6 6.9550 -2.2963 -8.3682 15 6 6.5432 -2.1893 -5.8870 16 6 3.4672 -1.2781 0.6988 17 6 2.0862 -0.8079 1.2022 18 1 1.4450 -1.6614 1.4229 19 6 2.2350 0.0875 2.4338 20 6 2.7238 -0.7500 3.6173 21 7 2.8668 0.1077 4.7964 22 6 3.2941 -0.4256 5.9831 23 1 3.5260 -1.4784 6.0497 24 6 3.4291 0.3868 7.1004 25 7 3.1461 1.6696 7.0195 26 14 4.0127 -0.3405 8.7191 27 1 4.2631 -1.7941 8.5469 28 1 5.2685 0.3312 9.1395 29 1 2.9708 -0.1368 9.7574 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1642 -0.1732 -2.0838 34 1 1.4552 -1.6694 -1.4053 35 1 3.4688 -2.1628 -3.3883 36 1 4.0190 -0.4701 -3.3669 37 1 3.4447 -1.1886 -5.5849 38 1 7.4755 -1.3810 -8.6502 39 1 7.6841 -3.0773 -8.1526 40 1 6.3118 -2.6159 -9.1881 41 1 7.5208 -2.5069 -5.5556 42 1 4.2434 -0.6056 1.0641 43 1 3.6613 -2.2937 1.0436 44 1 1.2706 0.5331 2.6777 45 1 2.9571 0.8766 2.2241 46 1 3.6882 -1.1956 3.3734 47 1 2.0015 -1.5390 3.8268 48 1 2.6582 1.0530 4.7366 49 1 3.2400 2.2374 7.8003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104588396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:16 Heat of formation + Delta-G solvation = -3.278521 kcal Electronic energy + Delta-G solvation = -28127.901057 eV Core-core repulsion = 24091.712339 eV Total energy + Delta-G solvation = -4036.188718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26997 -41.30842 -39.55066 -38.47242 -36.87048 -34.71099 -33.86739 -33.45768 -31.94570 -31.21242 -29.69348 -27.93226 -27.31356 -27.18185 -25.74490 -23.98410 -22.44306 -22.12139 -21.85364 -21.03913 -20.32620 -19.21810 -19.12690 -17.91019 -17.67812 -17.24362 -16.69332 -16.53473 -16.39987 -16.09174 -15.59792 -15.41507 -15.38028 -15.27530 -15.08363 -14.73287 -14.39958 -14.27453 -13.79847 -13.61521 -13.46736 -13.41466 -13.38779 -13.13428 -13.02887 -12.88887 -12.61856 -12.49023 -12.27929 -12.14442 -12.07080 -11.91009 -11.73689 -11.64318 -11.52883 -11.18094 -10.97269 -10.94547 -10.44812 -9.75573 -9.01341 -8.92609 -7.97171 -5.26067 0.78620 1.30140 1.45159 1.45869 1.47092 1.57217 1.71378 1.73484 2.54529 2.61055 3.30315 3.36583 3.51875 3.64359 3.70638 3.79869 3.87867 4.06728 4.12565 4.15685 4.25601 4.26143 4.35158 4.44462 4.47459 4.52402 4.57615 4.60509 4.67778 4.72411 4.73787 4.74618 4.80419 4.91014 4.94507 5.05347 5.14411 5.20960 5.26189 5.31210 5.36332 5.44994 5.48898 5.57959 5.96707 6.25980 6.32138 6.46063 6.58192 7.02034 7.31864 8.08286 8.31424 9.26566 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.001759 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.052200 B =15918.355582 C =16949.276594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.521 3.479 7 O -0.580 6.580 8 C 0.060 3.940 9 O -0.310 6.310 10 C -0.055 4.055 11 C -0.003 4.003 12 N -0.303 5.303 13 N -0.371 5.371 14 C 0.097 3.903 15 C 0.023 3.977 16 C 0.113 3.887 17 C -0.079 4.079 18 H 0.099 0.901 19 C -0.100 4.100 20 C 0.148 3.852 21 N -0.748 5.748 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.974 3.026 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.214 0.786 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.201 0.799 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.011 0.989 47 H 0.023 0.977 48 H 0.374 0.626 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -6.796 -34.808 35.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.025 4.025 5 N -0.347 5.347 6 C 0.310 3.690 7 O -0.459 6.459 8 C -0.018 4.018 9 O -0.222 6.222 10 C -0.109 4.109 11 C -0.189 4.189 12 N -0.127 5.127 13 N -0.159 5.159 14 C -0.042 4.042 15 C -0.123 4.123 16 C -0.010 4.010 17 C -0.099 4.099 18 H 0.117 0.883 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.391 5.391 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.803 3.197 27 H -0.192 1.192 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.231 0.769 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.041 0.959 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.037 -7.132 -35.720 36.482 hybrid contribution 0.735 0.154 2.367 2.483 sum -1.302 -6.978 -33.353 34.100 Atomic orbital electron populations 1.21679 0.91770 1.03134 1.02821 1.22443 0.97592 0.98983 0.92283 0.89794 1.22888 0.81148 0.99834 0.98595 1.48455 1.13493 1.66162 1.06540 1.20440 0.82520 0.76911 0.89159 1.90741 1.28186 1.48718 1.78286 1.22420 0.87513 1.04253 0.87594 1.86046 1.35541 1.85764 1.14879 1.18914 0.96152 1.12650 0.83224 1.24471 1.01090 1.03596 0.89710 1.77212 0.93774 1.20710 1.21024 1.48645 1.09230 1.51990 1.05990 1.22228 0.94325 1.03956 0.83693 1.22007 1.00513 1.06126 0.83605 1.21997 0.98649 1.00781 0.79595 1.22188 0.94302 0.99039 0.94338 0.88276 1.21567 1.01569 0.97644 0.93062 1.20878 0.96945 0.93434 0.86569 1.42601 1.80707 1.08583 1.07159 1.19686 1.35588 0.93958 0.88803 0.90905 1.25573 1.03418 0.96122 1.01633 1.69815 1.56885 1.05086 1.30146 0.85070 0.77118 0.77886 0.79676 1.19228 1.22032 1.21588 0.92776 0.90342 0.91294 0.87271 0.88370 0.86157 0.86425 0.76920 0.89451 0.86875 0.88535 0.78257 0.93510 0.92518 0.90702 0.92727 0.97132 0.95889 0.79402 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.31 71.98 0.67 -0.83 16 2 C -0.09 -1.38 3.10 -9.33 -0.03 -1.41 16 3 H 0.08 1.35 8.05 -2.38 -0.02 1.33 16 4 C 0.10 1.10 6.17 86.93 0.54 1.64 16 5 N -0.61 -13.12 3.33 -811.37 -2.70 -15.82 16 6 C 0.52 13.36 7.93 87.66 0.69 14.06 16 7 O -0.58 -21.83 16.83 16.02 0.27 -21.56 16 8 C 0.06 0.98 4.57 71.24 0.33 1.31 16 9 O -0.31 -7.25 9.76 -77.18 -0.75 -8.00 16 10 C -0.06 -1.06 6.96 22.11 0.15 -0.91 16 11 C 0.00 -0.05 11.07 85.29 0.94 0.89 16 12 N -0.30 -5.52 12.57 -56.85 -0.71 -6.23 16 13 N -0.37 -5.44 4.04 -368.56 -1.49 -6.93 16 14 C 0.10 0.51 11.48 127.77 1.47 1.98 16 15 C 0.02 0.37 11.56 83.45 0.96 1.33 16 16 C 0.11 3.00 5.73 86.73 0.50 3.49 16 17 C -0.08 -1.74 2.42 -9.61 -0.02 -1.76 16 18 H 0.10 2.00 8.04 -2.38 -0.02 1.98 16 19 C -0.10 -3.02 4.72 30.59 0.14 -2.87 16 20 C 0.15 5.99 6.13 86.38 0.53 6.52 16 21 N -0.75 -39.26 5.60 -343.45 -1.92 -41.19 16 22 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 23 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 26 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.11 0.59 7.48 -2.39 -0.02 0.57 16 34 H 0.10 0.73 7.99 -2.39 -0.02 0.72 16 35 H 0.12 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.12 1.18 7.80 -2.39 -0.02 1.16 16 37 H 0.21 1.66 7.69 -2.91 -0.02 1.63 16 38 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.05 1.51 7.73 -2.39 -0.02 1.49 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.76 8.00 -2.39 -0.02 1.74 16 46 H 0.01 0.45 7.58 -2.39 -0.02 0.43 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 49 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -86.13 406.23 3.41 -82.73 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.23 Total: 21.84 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 8.18 Total: 5.91 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.55 Total: -130.22 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.48 Total: -29.56 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -86.13 3.41 -82.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104588396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.448 kcal (2) G-P(sol) polarization free energy of solvation -86.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds