Wall clock time and date at job start Tue Mar 31 2020 19:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.65741 * 2 1 4 4 C 1.54590 * 110.98640 * 236.84131 * 2 1 3 5 5 N 1.48126 * 103.41940 * 204.37455 * 4 2 1 6 6 C 1.34781 * 127.02994 * 219.28649 * 5 4 2 7 7 O 1.21281 * 119.99802 * 179.68420 * 6 5 4 8 8 C 1.50699 * 120.00190 * 359.68405 * 6 5 4 9 9 O 1.42897 * 109.47100 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00019 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47197 * 180.02562 * 10 9 8 12 12 N 1.30502 * 125.64996 * 270.17896 * 11 10 9 13 13 C 1.34128 * 109.25609 * 180.29462 * 12 11 10 14 14 C 1.34670 * 108.02237 * 359.72151 * 13 12 11 15 15 N 1.35046 * 125.65115 * 90.00516 * 11 10 9 16 16 C 1.46499 * 126.39639 * 359.97025 * 15 11 10 17 17 C 1.47479 * 105.93516 * 39.02551 * 5 4 2 18 18 C 1.54011 * 107.08224 * 334.77613 * 17 5 4 19 19 H 1.09007 * 110.32391 * 120.19675 * 18 17 5 20 20 C 1.52996 * 110.32868 * 242.31135 * 18 17 5 21 21 N 1.46496 * 109.47169 * 293.54624 * 20 18 17 22 22 C 1.36936 * 120.00091 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99953 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00272 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46981 * 59.99732 * 26 24 22 28 28 H 1.48499 * 109.47190 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47073 * 299.99763 * 26 24 22 30 30 H 1.09008 * 109.46809 * 296.80912 * 1 2 3 31 31 H 1.08997 * 109.46925 * 56.80835 * 1 2 3 32 32 H 1.09003 * 109.47040 * 176.81652 * 1 2 3 33 33 H 1.08996 * 110.61895 * 85.86293 * 4 2 1 34 34 H 1.08995 * 110.55009 * 322.84934 * 4 2 1 35 35 H 1.09003 * 109.47020 * 59.99691 * 8 6 5 36 36 H 1.09006 * 109.46945 * 299.99854 * 8 6 5 37 37 H 1.09004 * 109.47114 * 60.00181 * 10 9 8 38 38 H 1.09000 * 109.47352 * 300.00395 * 10 9 8 39 39 H 1.07999 * 125.99228 * 179.72379 * 13 12 11 40 40 H 1.07997 * 126.59514 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47391 * 269.71816 * 16 15 11 42 42 H 1.09001 * 109.46813 * 149.71873 * 16 15 11 43 43 H 1.09004 * 109.47041 * 29.72000 * 16 15 11 44 44 H 1.08995 * 109.91320 * 94.13905 * 17 5 4 45 45 H 1.09000 * 109.91167 * 215.42282 * 17 5 4 46 46 H 1.08999 * 109.47134 * 53.54944 * 20 18 17 47 47 H 1.08999 * 109.47337 * 173.54833 * 20 18 17 48 48 H 0.97001 * 120.00487 * 0.02562 * 21 20 18 49 49 H 0.96998 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4322 -1.2057 -0.7583 6 6 4.5594 -1.2406 -1.4964 7 8 5.6027 -1.6001 -0.9933 8 6 4.5233 -0.8330 -2.9468 9 8 5.8317 -0.9543 -3.5083 10 6 5.9080 -0.5904 -4.8881 11 6 7.3249 -0.7562 -5.3737 12 7 8.2527 0.1610 -5.3399 13 6 9.3848 -0.3358 -5.8600 14 6 9.1515 -1.6110 -6.2245 15 7 7.8459 -1.8794 -5.9129 16 6 7.1432 -3.1465 -6.1295 17 6 3.2903 -1.5681 0.6642 18 6 2.0776 -0.7915 1.2102 19 1 1.3221 -1.4829 1.5835 20 6 2.5154 0.1660 2.3202 21 7 2.9826 -0.6056 3.4746 22 6 3.4277 0.0419 4.5961 23 1 3.4340 1.1213 4.6298 24 6 3.8708 -0.6892 5.6897 25 7 3.8627 -2.0047 5.6489 26 14 4.4773 0.1940 7.2200 27 1 3.3856 1.0369 7.7704 28 1 4.8911 -0.8056 8.2372 29 1 5.6368 1.0528 6.8690 30 1 -0.3633 0.4635 0.9173 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0571 33 1 2.1525 -0.1481 -2.0869 34 1 1.4612 -1.6602 -1.4141 35 1 4.1890 0.2016 -3.0252 36 1 3.8334 -1.4798 -3.4889 37 1 5.6019 0.4489 -5.0073 38 1 5.2473 -1.2327 -5.4704 39 1 10.3198 0.1940 -5.9676 40 1 9.8583 -2.2911 -6.6763 41 1 7.2570 -3.7801 -5.2499 42 1 7.5649 -3.6518 -6.9983 43 1 6.0848 -2.9502 -6.3015 44 1 3.1179 -2.6401 0.7588 45 1 4.1895 -1.2843 1.2110 46 1 3.3238 0.7997 1.9555 47 1 1.6714 0.7886 2.6169 48 1 2.9773 -1.5751 3.4442 49 1 4.1720 -2.5156 6.4132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106294487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:53 Heat of formation + Delta-G solvation = 5.885631 kcal Electronic energy + Delta-G solvation = -28650.118582 eV Core-core repulsion = 24614.327251 eV Total energy + Delta-G solvation = -4035.791330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35980 -40.13690 -38.47216 -37.27399 -34.62485 -34.33726 -32.88070 -31.48257 -31.27784 -29.54441 -28.13401 -27.41317 -26.39352 -26.07095 -24.92104 -23.17580 -21.69682 -21.19605 -20.37437 -19.93108 -19.29964 -17.75767 -17.30739 -17.10683 -16.63669 -16.56156 -16.02866 -15.56574 -15.30796 -14.79462 -14.62942 -14.52409 -14.05929 -13.82269 -13.65155 -13.48667 -13.28839 -13.21953 -13.11222 -12.89143 -12.82247 -12.58250 -12.34797 -12.14335 -11.88912 -11.73670 -11.44402 -11.07102 -10.83918 -10.61139 -10.50295 -10.32289 -10.24764 -10.12921 -9.98231 -9.90331 -9.71043 -9.62331 -8.84029 -8.75564 -8.58266 -6.89094 -5.72232 -3.01175 1.56941 2.38243 2.57198 2.65771 2.96030 3.48278 3.52568 3.53624 3.67610 4.17678 4.28015 4.34029 4.47952 4.51166 4.61344 4.63733 4.74521 4.78109 4.81378 4.88865 4.95399 4.98938 5.00792 5.16152 5.28557 5.32560 5.45268 5.46124 5.50207 5.61657 5.70088 5.76342 5.93089 5.97638 6.07118 6.14802 6.18284 6.25627 6.41872 6.46436 6.48054 6.63925 6.73654 6.81631 6.88603 7.58427 7.73639 7.81472 8.23842 8.46384 9.57564 10.14181 10.48645 11.50570 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002200 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.484374 B =12726.473637 C =14140.594618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.101 3.899 5 N -0.620 5.620 6 C 0.529 3.471 7 O -0.513 6.513 8 C 0.051 3.949 9 O -0.355 6.355 10 C 0.149 3.851 11 C 0.202 3.798 12 N -0.469 5.469 13 C -0.027 4.027 14 C -0.051 4.051 15 N -0.450 5.450 16 C 0.070 3.930 17 C 0.113 3.887 18 C -0.102 4.102 19 H 0.087 0.913 20 C 0.162 3.838 21 N -0.732 5.732 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -1.182 -30.206 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.022 4.022 5 N -0.357 5.357 6 C 0.315 3.685 7 O -0.387 6.387 8 C -0.029 4.029 9 O -0.272 6.272 10 C 0.071 3.929 11 C -0.059 4.059 12 N -0.189 5.189 13 C -0.176 4.176 14 C -0.184 4.184 15 N -0.133 5.133 16 C -0.073 4.073 17 C -0.008 4.008 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.040 0.960 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.958 -0.697 -29.466 29.539 hybrid contribution 0.314 -0.725 0.428 0.898 sum -1.644 -1.422 -29.038 29.119 Atomic orbital electron populations 1.21730 0.93774 1.02007 1.02183 1.22231 0.96062 0.99828 0.93931 0.89682 1.22614 0.83293 0.98600 0.97656 1.48749 1.07772 1.66659 1.12472 1.19683 0.82661 0.78892 0.87228 1.90791 1.29485 1.45936 1.72482 1.22189 0.85964 1.02039 0.92659 1.88120 1.27671 1.88315 1.23137 1.20495 0.88194 1.01380 0.82846 1.22587 0.96948 0.83223 1.03167 1.70223 0.99741 1.30341 1.18633 1.22361 0.97935 0.93196 1.04134 1.22777 0.86052 0.99878 1.09717 1.45274 1.10418 1.11815 1.45838 1.22102 0.98013 0.83628 1.03537 1.22192 1.00412 0.98767 0.79450 1.22394 0.96542 0.97993 0.95239 0.89467 1.20698 0.96185 0.92817 0.86838 1.42350 1.77185 1.05685 1.12435 1.19160 1.34787 0.91206 0.91992 0.91275 1.24738 1.02184 0.95476 0.98514 1.69643 1.53306 1.04139 1.31080 0.86263 0.78671 0.78295 0.82932 1.21301 1.21693 1.21235 0.91696 0.92685 0.92412 0.90577 0.90693 0.89868 0.90286 0.89593 0.91619 0.80979 0.80562 0.89884 0.89425 0.89534 0.91689 0.89027 0.96252 0.96012 0.78257 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.17 37.16 0.34 -0.90 16 2 C -0.10 -1.11 3.19 -88.93 -0.28 -1.40 16 3 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 4 C 0.10 0.96 6.38 -2.31 -0.01 0.95 16 5 N -0.62 -8.68 3.29 -169.98 -0.56 -9.23 16 6 C 0.53 8.24 7.97 -10.98 -0.09 8.15 16 7 O -0.51 -10.92 16.84 -14.35 -0.24 -11.16 16 8 C 0.05 0.54 5.35 36.00 0.19 0.73 16 9 O -0.36 -4.70 9.86 -55.14 -0.54 -5.24 16 10 C 0.15 1.40 6.24 36.00 0.22 1.63 16 11 C 0.20 2.40 7.53 -155.41 -1.17 1.23 16 12 N -0.47 -6.52 11.25 -10.82 -0.12 -6.65 16 13 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 14 C -0.05 -0.45 11.58 -16.56 -0.19 -0.64 16 15 N -0.45 -4.23 3.15 -121.28 -0.38 -4.61 16 16 C 0.07 0.36 10.98 59.85 0.66 1.02 16 17 C 0.11 1.90 6.31 -2.98 -0.02 1.88 16 18 C -0.10 -1.56 2.64 -89.24 -0.24 -1.80 16 19 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 20 C 0.16 3.23 5.35 -4.05 -0.02 3.21 16 21 N -0.73 -18.70 5.33 -59.91 -0.32 -19.02 16 22 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 26 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.08 0.51 7.23 -51.93 -0.38 0.13 16 34 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 35 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.38 7.06 -51.93 -0.37 0.01 16 39 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.31 7.04 -51.93 -0.37 -0.06 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.93 7.48 -51.93 -0.39 1.55 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.38 10.25 7.51 -40.82 -0.31 9.95 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -39.87 405.30 -9.49 -49.36 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.06 Total: 4.48 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.07 Total: 6.05 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.66 Total: -67.59 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.79 Total: -16.40 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.87 -9.49 -49.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106294487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -39.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds