Wall clock time and date at job start Tue Mar 31 2020 19:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.65741 * 2 1 4 4 C 1.54590 * 110.98640 * 236.84131 * 2 1 3 5 5 N 1.48126 * 103.41940 * 204.37455 * 4 2 1 6 6 C 1.34781 * 127.02994 * 219.28649 * 5 4 2 7 7 O 1.21281 * 119.99802 * 179.68420 * 6 5 4 8 8 C 1.50699 * 120.00190 * 359.68405 * 6 5 4 9 9 O 1.42897 * 109.47100 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00019 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47197 * 180.02562 * 10 9 8 12 12 N 1.30502 * 125.64996 * 270.17896 * 11 10 9 13 13 C 1.34128 * 109.25609 * 180.29462 * 12 11 10 14 14 C 1.34670 * 108.02237 * 359.72151 * 13 12 11 15 15 N 1.35046 * 125.65115 * 90.00516 * 11 10 9 16 16 C 1.46499 * 126.39639 * 359.97025 * 15 11 10 17 17 C 1.47479 * 105.93516 * 39.02551 * 5 4 2 18 18 C 1.54011 * 107.08224 * 334.77613 * 17 5 4 19 19 H 1.09007 * 110.32391 * 120.19675 * 18 17 5 20 20 C 1.52996 * 110.32868 * 242.31135 * 18 17 5 21 21 N 1.46496 * 109.47169 * 293.54624 * 20 18 17 22 22 C 1.36936 * 120.00091 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99953 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00272 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46981 * 59.99732 * 26 24 22 28 28 H 1.48499 * 109.47190 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47073 * 299.99763 * 26 24 22 30 30 H 1.09008 * 109.46809 * 296.80912 * 1 2 3 31 31 H 1.08997 * 109.46925 * 56.80835 * 1 2 3 32 32 H 1.09003 * 109.47040 * 176.81652 * 1 2 3 33 33 H 1.08996 * 110.61895 * 85.86293 * 4 2 1 34 34 H 1.08995 * 110.55009 * 322.84934 * 4 2 1 35 35 H 1.09003 * 109.47020 * 59.99691 * 8 6 5 36 36 H 1.09006 * 109.46945 * 299.99854 * 8 6 5 37 37 H 1.09004 * 109.47114 * 60.00181 * 10 9 8 38 38 H 1.09000 * 109.47352 * 300.00395 * 10 9 8 39 39 H 1.07999 * 125.99228 * 179.72379 * 13 12 11 40 40 H 1.07997 * 126.59514 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47391 * 269.71816 * 16 15 11 42 42 H 1.09001 * 109.46813 * 149.71873 * 16 15 11 43 43 H 1.09004 * 109.47041 * 29.72000 * 16 15 11 44 44 H 1.08995 * 109.91320 * 94.13905 * 17 5 4 45 45 H 1.09000 * 109.91167 * 215.42282 * 17 5 4 46 46 H 1.08999 * 109.47134 * 53.54944 * 20 18 17 47 47 H 1.08999 * 109.47337 * 173.54833 * 20 18 17 48 48 H 0.97001 * 120.00487 * 0.02562 * 21 20 18 49 49 H 0.96998 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4322 -1.2057 -0.7583 6 6 4.5594 -1.2406 -1.4964 7 8 5.6027 -1.6001 -0.9933 8 6 4.5233 -0.8330 -2.9468 9 8 5.8317 -0.9543 -3.5083 10 6 5.9080 -0.5904 -4.8881 11 6 7.3249 -0.7562 -5.3737 12 7 8.2527 0.1610 -5.3399 13 6 9.3848 -0.3358 -5.8600 14 6 9.1515 -1.6110 -6.2245 15 7 7.8459 -1.8794 -5.9129 16 6 7.1432 -3.1465 -6.1295 17 6 3.2903 -1.5681 0.6642 18 6 2.0776 -0.7915 1.2102 19 1 1.3221 -1.4829 1.5835 20 6 2.5154 0.1660 2.3202 21 7 2.9826 -0.6056 3.4746 22 6 3.4277 0.0419 4.5961 23 1 3.4340 1.1213 4.6298 24 6 3.8708 -0.6892 5.6897 25 7 3.8627 -2.0047 5.6489 26 14 4.4773 0.1940 7.2200 27 1 3.3856 1.0369 7.7704 28 1 4.8911 -0.8056 8.2372 29 1 5.6368 1.0528 6.8690 30 1 -0.3633 0.4635 0.9173 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0571 33 1 2.1525 -0.1481 -2.0869 34 1 1.4612 -1.6602 -1.4141 35 1 4.1890 0.2016 -3.0252 36 1 3.8334 -1.4798 -3.4889 37 1 5.6019 0.4489 -5.0073 38 1 5.2473 -1.2327 -5.4704 39 1 10.3198 0.1940 -5.9676 40 1 9.8583 -2.2911 -6.6763 41 1 7.2570 -3.7801 -5.2499 42 1 7.5649 -3.6518 -6.9983 43 1 6.0848 -2.9502 -6.3015 44 1 3.1179 -2.6401 0.7588 45 1 4.1895 -1.2843 1.2110 46 1 3.3238 0.7997 1.9555 47 1 1.6714 0.7886 2.6169 48 1 2.9773 -1.5751 3.4442 49 1 4.1720 -2.5156 6.4132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106294487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:52 Heat of formation + Delta-G solvation = -22.726919 kcal Electronic energy + Delta-G solvation = -28651.359315 eV Core-core repulsion = 24614.327251 eV Total energy + Delta-G solvation = -4037.032064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.05940 -41.27046 -39.49366 -38.35233 -36.46854 -34.97838 -34.23328 -33.08062 -32.09311 -30.92951 -29.24475 -28.01622 -27.18688 -27.06902 -26.28784 -24.92919 -22.54489 -22.39915 -21.14054 -21.02418 -20.42292 -19.21562 -18.50707 -18.06848 -17.57402 -17.48000 -17.00091 -16.69972 -16.42247 -16.17800 -15.68045 -15.43975 -15.29232 -15.23617 -15.00650 -14.66708 -14.31403 -14.05973 -13.94933 -13.81532 -13.64848 -13.52112 -13.25780 -13.12953 -13.10512 -12.93986 -12.74441 -12.70777 -12.50757 -12.21481 -11.96268 -11.85062 -11.47637 -11.37069 -11.03961 -10.98387 -10.91519 -10.84598 -10.60995 -9.77144 -9.48077 -9.03499 -7.98250 -5.27263 0.85177 1.43225 1.47456 1.51208 1.53210 1.61135 1.88570 2.08692 2.53115 2.93536 3.33679 3.36873 3.54119 3.61558 3.74792 3.78747 3.85277 3.92498 4.12193 4.17042 4.18992 4.24263 4.27397 4.36468 4.40770 4.47059 4.54334 4.56415 4.58846 4.67580 4.68503 4.76980 4.78885 4.90039 4.94448 5.01293 5.11094 5.23672 5.26772 5.28398 5.40942 5.45191 5.59611 5.77371 5.92342 6.17845 6.24054 6.51718 7.07209 7.09693 7.30087 8.05916 8.28608 9.25147 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002200 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.484374 B =12726.473637 C =14140.594618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.103 3.897 5 N -0.617 5.617 6 C 0.516 3.484 7 O -0.589 6.589 8 C 0.061 3.939 9 O -0.399 6.399 10 C 0.149 3.851 11 C 0.176 3.824 12 N -0.520 5.520 13 C -0.063 4.063 14 C -0.040 4.040 15 N -0.451 5.451 16 C 0.062 3.938 17 C 0.116 3.884 18 C -0.092 4.092 19 H 0.092 0.908 20 C 0.162 3.838 21 N -0.745 5.745 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.974 3.026 27 H -0.272 1.272 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.184 0.816 40 H 0.214 0.786 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.004 0.996 47 H 0.032 0.968 48 H 0.374 0.626 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 -0.910 -33.226 33.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.306 3.694 7 O -0.469 6.469 8 C -0.018 4.018 9 O -0.317 6.317 10 C 0.072 3.928 11 C -0.086 4.086 12 N -0.241 5.241 13 C -0.211 4.211 14 C -0.174 4.174 15 N -0.134 5.134 16 C -0.079 4.079 17 C -0.007 4.007 18 C -0.112 4.112 19 H 0.110 0.890 20 C 0.036 3.964 21 N -0.388 5.388 22 C -0.381 4.381 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.803 3.197 27 H -0.198 1.198 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.202 0.798 40 H 0.230 0.770 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.022 0.978 47 H 0.049 0.951 48 H 0.206 0.794 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.442 -0.385 -32.539 32.843 hybrid contribution 1.084 -0.804 1.321 1.889 sum -3.358 -1.189 -31.218 31.420 Atomic orbital electron populations 1.21704 0.91442 1.03090 1.02866 1.22245 0.97810 0.99070 0.92137 0.90050 1.22988 0.80516 1.00211 0.98098 1.48857 1.09589 1.65692 1.11013 1.20865 0.81680 0.77438 0.89420 1.90752 1.32324 1.49468 1.74364 1.22313 0.86029 1.04660 0.88798 1.88062 1.29464 1.88877 1.25334 1.20757 0.87704 1.02907 0.81476 1.23096 0.97869 0.83838 1.03801 1.70139 1.01264 1.32468 1.20268 1.22784 0.98150 0.94735 1.05462 1.23361 0.86450 0.99561 1.08056 1.45576 1.10619 1.12440 1.44728 1.22417 0.99211 0.81923 1.04344 1.21914 0.98529 0.98823 0.81455 1.22279 0.95880 0.97505 0.95501 0.89015 1.20843 0.95532 0.93421 0.86628 1.42577 1.77266 1.05560 1.13387 1.19589 1.33865 0.91636 0.92965 0.90856 1.25602 1.03201 0.96282 1.01795 1.69807 1.54822 1.05588 1.31749 0.85202 0.78330 0.77139 0.79043 1.19786 1.21939 1.20899 0.93112 0.89664 0.91435 0.86152 0.87958 0.86784 0.85348 0.88772 0.87373 0.79845 0.76960 0.90676 0.86649 0.87497 0.91984 0.94683 0.97828 0.95056 0.79435 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.17 71.98 0.66 -1.19 16 2 C -0.09 -1.79 3.19 -9.70 -0.03 -1.82 16 3 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 4 C 0.10 1.50 6.38 86.61 0.55 2.06 16 5 N -0.62 -16.61 3.29 -810.09 -2.67 -19.28 16 6 C 0.52 15.93 7.97 87.66 0.70 16.63 16 7 O -0.59 -26.60 16.84 16.01 0.27 -26.34 16 8 C 0.06 1.08 5.35 71.24 0.38 1.47 16 9 O -0.40 -10.04 9.86 -129.94 -1.28 -11.33 16 10 C 0.15 2.47 6.24 71.23 0.44 2.92 16 11 C 0.18 4.05 7.53 138.13 1.04 5.09 16 12 N -0.52 -14.81 11.25 -188.13 -2.12 -16.93 16 13 C -0.06 -1.42 11.87 83.52 0.99 -0.42 16 14 C -0.04 -0.66 11.58 83.09 0.96 0.30 16 15 N -0.45 -7.79 3.15 -537.61 -1.69 -9.49 16 16 C 0.06 0.48 10.98 127.77 1.40 1.88 16 17 C 0.12 4.05 6.31 86.53 0.55 4.60 16 18 C -0.09 -2.80 2.64 -9.90 -0.03 -2.82 16 19 H 0.09 2.72 7.85 -2.38 -0.02 2.70 16 20 C 0.16 6.63 5.35 86.38 0.46 7.09 16 21 N -0.75 -39.59 5.33 -343.47 -1.83 -41.43 16 22 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 23 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 25 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 26 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 29 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 33 H 0.12 0.81 7.23 -2.39 -0.02 0.80 16 34 H 0.10 1.06 8.02 -2.39 -0.02 1.04 16 35 H 0.11 1.33 7.90 -2.39 -0.02 1.32 16 36 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 0.78 7.06 -2.39 -0.02 0.76 16 39 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.11 0.37 7.04 -2.38 -0.02 0.35 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.03 1.61 7.48 -2.39 -0.02 1.59 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.37 21.02 7.51 -92.71 -0.70 20.32 16 49 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -96.27 405.30 2.62 -93.65 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.25 Total: 24.48 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 9.39 Total: 17.88 kcal Atomic # 7 Polarization: -140.59 SS G_CDS: -8.03 Total: -148.61 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.01 Total: -37.66 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -96.27 2.62 -93.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106294487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.922 kcal (2) G-P(sol) polarization free energy of solvation -96.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds